Sed0014291 (gene) Chayote v1

Overview


Name	Sed0014291
Type	gene
Organism	Sechium edule (Chayote v1)
Description	calmodulin-like
Location	LG02: 3913298 .. 3913513 (-)
RNA-Seq Expression	Sed0014291
Synteny	Sed0014291

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCAAATTTTCAAACAACATGATAGCAATAACGATGGTTTCTTGAACATATGGGAGATAACAAAAGTGTTTGCTTTTCTTGGCTCAATTATTCCATTCAACAAAGCTCATTATGGTTTGGCTCTTGCAGATGCCAATAAAGATGGTCTAATAAGCGAAGTTGAACTCGATCAACTAATCGATTATGCAAGTAAGGTCATGAAGAAGAAATAA

mRNA sequence

ATGAAGCAAATTTTCAAACAACATGATAGCAATAACGATGGTTTCTTGAACATATGGGAGATAACAAAAGTGTTTGCTTTTCTTGGCTCAATTATTCCATTCAACAAAGCTCATTATGGTTTGGCTCTTGCAGATGCCAATAAAGATGGTCTAATAAGCGAAGTTGAACTCGATCAACTAATCGATTATGCAAGTAAGGTCATGAAGAAGAAATAA

Coding sequence (CDS)

ATGAAGCAAATTTTCAAACAACATGATAGCAATAACGATGGTTTCTTGAACATATGGGAGATAACAAAAGTGTTTGCTTTTCTTGGCTCAATTATTCCATTCAACAAAGCTCATTATGGTTTGGCTCTTGCAGATGCCAATAAAGATGGTCTAATAAGCGAAGTTGAACTCGATCAACTAATCGATTATGCAAGTAAGGTCATGAAGAAGAAATAA

Protein sequence

MKQIFKQHDSNNDGFLNIWEITKVFAFLGSIIPFNKAHYGLALADANKDGLISEVELDQLIDYASKVMKKK

Homology

[Close]

BLAST of Sed0014291 vs. NCBI nr
Match: XP_023530739.1 (calmodulin-2/4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 112.8 bits (281), Expect = 1.2e-21
Identity = 53/71 (74.65%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 1   MKQIFKQHDSNNDGFLNIWEITKVFAFLGSIIPFNKAHYGLALADANKDGLISEVELDQL 60
           MK+IF+ HDS+ DGFLNI E+TK FAFLGSIIPF KA YG+  ADANKDGLISE ELD+L
Sbjct: 82  MKEIFRYHDSDKDGFLNIRELTKAFAFLGSIIPFEKASYGMTYADANKDGLISEAELDKL 141

Query: 61  IDYASKVMKKK 72
           +DYA K MKKK
Sbjct: 142 VDYAQKFMKKK 152

[Close]

BLAST of Sed0014291 vs. NCBI nr
Match: XP_022930007.1 (uncharacterized protein LOC111436449 [Cucurbita moschata])

HSP 1 Score: 112.5 bits (280), Expect = 1.5e-21
Identity = 53/71 (74.65%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 1   MKQIFKQHDSNNDGFLNIWEITKVFAFLGSIIPFNKAHYGLALADANKDGLISEVELDQL 60
           MK+IFK HDS+ DGFLN+ E+TK FAFLGSIIPF KA YG++ ADANKDGLISE ELD+L
Sbjct: 82  MKEIFKYHDSDKDGFLNLRELTKAFAFLGSIIPFEKASYGMSYADANKDGLISEAELDKL 141

Query: 61  IDYASKVMKKK 72
           IDYA K +KKK
Sbjct: 142 IDYAQKFVKKK 152

[Close]

BLAST of Sed0014291 vs. NCBI nr
Match: XP_022951134.1 (uncharacterized protein LOC111454074 isoform X1 [Cucurbita moschata])

HSP 1 Score: 112.1 bits (279), Expect = 2.0e-21
Identity = 52/71 (73.24%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 1   MKQIFKQHDSNNDGFLNIWEITKVFAFLGSIIPFNKAHYGLALADANKDGLISEVELDQL 60
           MK+IFK HDSN DGFL+I E+TK F+FLGSI+PFNKAHY +A AD N DGLISE ELD+L
Sbjct: 106 MKEIFKNHDSNKDGFLDIKEVTKAFSFLGSILPFNKAHYAMAYADTNHDGLISEFELDKL 165

Query: 61  IDYASKVMKKK 72
           IDYASK + KK
Sbjct: 166 IDYASKFINKK 176

[Close]

BLAST of Sed0014291 vs. NCBI nr
Match: XP_022930012.1 (calmodulin-2/4-like [Cucurbita moschata])

HSP 1 Score: 111.3 bits (277), Expect = 3.4e-21
Identity = 52/71 (73.24%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 1   MKQIFKQHDSNNDGFLNIWEITKVFAFLGSIIPFNKAHYGLALADANKDGLISEVELDQL 60
           MK+IF+ HDS+ DGFLNI E+TK FAFLGSIIPF KA YG+  ADANKDGLISE ELD+L
Sbjct: 82  MKEIFRYHDSDKDGFLNIRELTKAFAFLGSIIPFEKASYGMTYADANKDGLISEAELDKL 141

Query: 61  IDYASKVMKKK 72
           +DYA K +KKK
Sbjct: 142 VDYAQKFIKKK 152

[Close]

BLAST of Sed0014291 vs. NCBI nr
Match: XP_022144156.1 (probable calcium-binding protein CML15 [Momordica charantia])

HSP 1 Score: 111.3 bits (277), Expect = 3.4e-21
Identity = 53/70 (75.71%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 1   MKQIFKQHDSNNDGFLNIWEITKVFAFLGSIIPFNKAHYGLALADANKDGLISEVELDQL 60
           MK+IFK HDSN DGFLN+ E+TK F FLGSIIPF KAHYGL  ADAN DGLI+E ELD+L
Sbjct: 159 MKEIFKYHDSNKDGFLNVRELTKAFGFLGSIIPFCKAHYGLVHADANNDGLINETELDKL 218

Query: 61  IDYASKVMKK 71
           IDYA KV+KK
Sbjct: 219 IDYAYKVIKK 228

[Close]

BLAST of Sed0014291 vs. ExPASy TrEMBL
Match: A0A6J1EP67 (uncharacterized protein LOC111436449 OS=Cucurbita moschata OX=3662 GN=LOC111436449 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 7.5e-22
Identity = 53/71 (74.65%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 1   MKQIFKQHDSNNDGFLNIWEITKVFAFLGSIIPFNKAHYGLALADANKDGLISEVELDQL 60
           MK+IFK HDS+ DGFLN+ E+TK FAFLGSIIPF KA YG++ ADANKDGLISE ELD+L
Sbjct: 82  MKEIFKYHDSDKDGFLNLRELTKAFAFLGSIIPFEKASYGMSYADANKDGLISEAELDKL 141

Query: 61  IDYASKVMKKK 72
           IDYA K +KKK
Sbjct: 142 IDYAQKFVKKK 152

[Close]

BLAST of Sed0014291 vs. ExPASy TrEMBL
Match: A0A6J1GHU7 (uncharacterized protein LOC111454074 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111454074 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 9.7e-22
Identity = 52/71 (73.24%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 1   MKQIFKQHDSNNDGFLNIWEITKVFAFLGSIIPFNKAHYGLALADANKDGLISEVELDQL 60
           MK+IFK HDSN DGFL+I E+TK F+FLGSI+PFNKAHY +A AD N DGLISE ELD+L
Sbjct: 106 MKEIFKNHDSNKDGFLDIKEVTKAFSFLGSILPFNKAHYAMAYADTNHDGLISEFELDKL 165

Query: 61  IDYASKVMKKK 72
           IDYASK + KK
Sbjct: 166 IDYASKFINKK 176

[Close]

BLAST of Sed0014291 vs. ExPASy TrEMBL
Match: A0A6J1CSH1 (probable calcium-binding protein CML15 OS=Momordica charantia OX=3673 GN=LOC111013915 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.7e-21
Identity = 53/70 (75.71%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 1   MKQIFKQHDSNNDGFLNIWEITKVFAFLGSIIPFNKAHYGLALADANKDGLISEVELDQL 60
           MK+IFK HDSN DGFLN+ E+TK F FLGSIIPF KAHYGL  ADAN DGLI+E ELD+L
Sbjct: 159 MKEIFKYHDSNKDGFLNVRELTKAFGFLGSIIPFCKAHYGLVHADANNDGLINETELDKL 218

Query: 61  IDYASKVMKK 71
           IDYA KV+KK
Sbjct: 219 IDYAYKVIKK 228

[Close]

BLAST of Sed0014291 vs. ExPASy TrEMBL
Match: A0A6J1EP72 (calmodulin-2/4-like OS=Cucurbita moschata OX=3662 GN=LOC111436455 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.7e-21
Identity = 52/71 (73.24%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 1   MKQIFKQHDSNNDGFLNIWEITKVFAFLGSIIPFNKAHYGLALADANKDGLISEVELDQL 60
           MK+IF+ HDS+ DGFLNI E+TK FAFLGSIIPF KA YG+  ADANKDGLISE ELD+L
Sbjct: 82  MKEIFRYHDSDKDGFLNIRELTKAFAFLGSIIPFEKASYGMTYADANKDGLISEAELDKL 141

Query: 61  IDYASKVMKKK 72
           +DYA K +KKK
Sbjct: 142 VDYAQKFIKKK 152

[Close]

BLAST of Sed0014291 vs. ExPASy TrEMBL
Match: A0A6J1EQE8 (calmodulin-like OS=Cucurbita moschata OX=3662 GN=LOC111436456 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.7e-21
Identity = 52/71 (73.24%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 1   MKQIFKQHDSNNDGFLNIWEITKVFAFLGSIIPFNKAHYGLALADANKDGLISEVELDQL 60
           MK+IF+ HDS+ DGFLN+ E+TK FAFLGSIIPF KA YG++ ADANKDGLISE ELD+L
Sbjct: 82  MKEIFRYHDSDKDGFLNLRELTKAFAFLGSIIPFEKASYGMSYADANKDGLISETELDKL 141

Query: 61  IDYASKVMKKK 72
           IDYA K +KKK
Sbjct: 142 IDYAQKFVKKK 152

The following BLAST results are available for this feature:

BLAST of Sed0014291 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023530739.1	1.2e-21	74.65	calmodulin-2/4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022930007.1	1.5e-21	74.65	uncharacterized protein LOC111436449 [Cucurbita moschata]	[more]
XP_022951134.1	2.0e-21	73.24	uncharacterized protein LOC111454074 isoform X1 [Cucurbita moschata]	[more]
XP_022930012.1	3.4e-21	73.24	calmodulin-2/4-like [Cucurbita moschata]	[more]
XP_022144156.1	3.4e-21	75.71	probable calcium-binding protein CML15 [Momordica charantia]	[more]

BLAST of Sed0014291 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0014291 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EP67	7.5e-22	74.65	uncharacterized protein LOC111436449 OS=Cucurbita moschata OX=3662 GN=LOC1114364...	[more]
A0A6J1GHU7	9.7e-22	73.24	uncharacterized protein LOC111454074 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1CSH1	1.7e-21	75.71	probable calcium-binding protein CML15 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1EP72	1.7e-21	73.24	calmodulin-2/4-like OS=Cucurbita moschata OX=3662 GN=LOC111436455 PE=4 SV=1	[more]
A0A6J1EQE8	1.7e-21	73.24	calmodulin-like OS=Cucurbita moschata OX=3662 GN=LOC111436456 PE=4 SV=1	[more]

BLAST of Sed0014291 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.238.10		coord: 1..71 e-value: 1.6E-8 score: 35.9
IPR002048	EF-hand domain	PFAM	PF13405	EF-hand_6	coord: 1..26 e-value: 2.2E-5 score: 23.9
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 1..31 score: 9.826979
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 45..57
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 9..21
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 1..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0014291.1	Sed0014291.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding