Sed0014181 (gene) Chayote v1

Overview


Name	Sed0014181
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Tubby-like F-box protein
Location	LG04: 31016341 .. 31018820 (+)
RNA-Seq Expression	Sed0014181
Synteny	Sed0014181

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAACCTGCGGCGGCGACCACGGCGGCTCTTTTGTGTTTCCTGTTGCTTTCTGCGGCGGCGGTGACGGTTTCAGCCGACGCCGCTGATTGCATCGACGGCTGCTTCACTGCCTGTGTCCAGAAAGACGGTAACTTTTTTCCCCCTAATTTCCTTCTTATCTAAAGACTGGTTTAATATTTTATTTTTTATTTTTTATTTTTTCGTTTTATGTTTCCTCAATATTTTTATATTTGATTATTTATTGATGAAAATATGTGCATTACTCAATTTTAAAAACTAAAATATGTTTTTAAATTTTCAAATTTTGTTTGGTTTCAAAATAAAAAAACTGATAAAGATAAAATAGTTGTTATAATTATAAATTGGAAAAAACAAAAGGTTAAAAAAAATAAAATGACTATCTTAAATAATAAATAATTTGTTTCAAAACAATTACAATTCAAACAACTTTACCATCGAATATGCTTAAATCATTTGTTTCAGCCACATAGGATAGGCATATATTAGATTCTAAAAATCGTTTGAATTAATTAAAAAAAAAATTCTTCTGTAATTTCTGAAATTATCCTTCGAACTAATTTGCTTGGATTTTTTTTTCTCTCAGAAAGATCATAGAATAGTTTGTAACCCTATGGATTGGTATTTATTGGTAGTTAACCTTACCAGAGTATTTTTTATAAAGTTTTTAAAAATAATTAAAAAGAATAGGATAATTAAGACTCGTTTCCTAACGTTTCCGTTTCCTGTTTCTCATTTCTGTTTCTTATTTTTTAGAAACACACTTTGATAATCGTTCCCGTCTCTTGTTCCCAAAAATAAAAAGAAACGTTTCTAAAATTAAGTAGAAAAATGAGAAACTACCCAGCTTGTTTCTAGTGTTCTGTTTCTTTTTTTCCTGAAAGCTGGAACATTTTGCTTTATATAAATACACGTTGCTCAATTTTAAATAAAACTACCTTATTTTGAATTATAACTTTTTTTTTCCTTTTTCCTTTTTATTGAAGTACTGAAAAAAGACGTATAGTTATTTTTCTAAAAGGAAGTTGGGTTATGGTGCAGTGAGATTAATGCAGCGTTGTGAGGGCAAGTGTAGAATTAAATGCGGTCCAGGTATTGCAATTTACTTTCATGATTAATTTAACATTATTTCTTTTCTTTTGCTTCTTATCATTTTGTCTTATCTTAATTCAATTATTAATGTGATATCAAAGTTTATGGTAGGTCTCTTTTATGATTCCAATATTAATATCAATAGCAGCTGCAATTTCATTTGAGTTTTTATGAGTCCTTGATTCAAAGGATTCTTTCTTTTATTTGTTTAACAATTTTCAGATTTGTCTACATTTTTTTAAATTTAATTGTCCTGATTTTTTAGTTAGACTTTAAAAAAATTAACTATATTTGGGACTGAGATATTAGTTATTAAATCATTTCATATTAATTTTTTAGCTAAACTAATTTTGGATTAGAAAAATTGTAGCTGTTAAGACAATTGTCATTGAATACAATTTAAAATTTCCATTTCTCAATGTTACATCCTCTGAAGAAATTTAAAAAAAAAAAAACAGAAAAAGAAAAAGGGGGTGCTCTATTGAATACTTAATTCATCTCAAACAAAGTTTGAATTCTTCTCTTACCTTTATTGAACTAAAAAACATTTTTTACAACATAGAGACAACACCATATATTATACTAAAATTAGTTCCGTAATAATTTAGAAATACGAAGCTATATATTTTTGGATACGGTAGTCTTTGAAATCATATTAATAGAAATGGATTCAATAAAGTTTCTGAGCAATGAAGGTTTTTATATAAAATTTTGTCATTGGTAATAGTTTGGCAAATTAGATACATGCAATACCCCTTCCCCGAATGTATTAAAAAAAAATAGATACATAGAAATTATAATAATGATGATATGATATGAATTAAATAATTGAATGATAAAAAAAAATTATATCATTTATATATGAATAATTGTTTTGTACTTTTTTTTTTTGAAGTGCAATAATTGTTTTGTACTTGATTCGCATGTAGGTAATAATGTGCATTAATTTTTAGGTTTTATCAAATCATAAAAGATAATATTCTAATTCTTATCTTTAAATCATATACATAAAACCAAATTAAGAACGGTAAAGTTAACTTTCAAAATTCTGTCCAATTATAGCTTATTTTTTAAAAATATATAACTTATCGTATAATTTTATATGATGTAGCTTGATTGAATATAAATTTATAATTATTATAGGATCCTTTAATGGTTAAGAGGATTTTAAAATTTTAAGGAGAGGATTTTAAAATTTTAAGGAGATGAGTCCATCTATAATATATATCTACTTATGAATTAATTTTGAGTTTGGGTAGTCGCCTATCTTATAAATTTACTGTATTGCTTTATTGATTATAGAGGTGATATTTAATTATTTAAATTTGATTGCAGATAATGAAGTTGAAGATTTGATTCATTGA

mRNA sequence

ATGGGGAAACCTGCGGCGGCGACCACGGCGGCTCTTTTGTGTTTCCTGTTGCTTTCTGCGGCGGCGGTGACGGTTTCAGCCGACGCCGCTGATTGCATCGACGGCTGCTTCACTGCCTGTGTCCAGAAAGACGTGAGATTAATGCAGCGTTGTGAGGGCAAGTGTAGAATTAAATGCGGTCCAGATAATGAAGTTGAAGATTTGATTCATTGA

Coding sequence (CDS)

ATGGGGAAACCTGCGGCGGCGACCACGGCGGCTCTTTTGTGTTTCCTGTTGCTTTCTGCGGCGGCGGTGACGGTTTCAGCCGACGCCGCTGATTGCATCGACGGCTGCTTCACTGCCTGTGTCCAGAAAGACGTGAGATTAATGCAGCGTTGTGAGGGCAAGTGTAGAATTAAATGCGGTCCAGATAATGAAGTTGAAGATTTGATTCATTGA

Protein sequence

MGKPAAATTAALLCFLLLSAAAVTVSADAADCIDGCFTACVQKDVRLMQRCEGKCRIKCGPDNEVEDLIH

Homology

[Close]

BLAST of Sed0014181 vs. NCBI nr
Match: KAG6600340.1 (hypothetical protein SDJN03_05573, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030996.1 hypothetical protein SDJN02_05035, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 113.2 bits (282), Expect = 8.9e-22
Identity = 58/71 (81.69%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 1  MGKPAAATTAALLCFLLLSAAAVTVSADAADCIDGCFTACVQKDVRLMQRCEGKCRIKCG 60
          M K  AATT A+LCF+LLSAAA TVSADAADCIDGCFTACVQKD RLMQRCEGKCRIKCG
Sbjct: 1  MKKSTAATTVAILCFILLSAAATTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCG 60

Query: 61 PDN--EVEDLI 70
          PD   E ED+I
Sbjct: 61 PDTKFEGEDII 71

[Close]

BLAST of Sed0014181 vs. NCBI nr
Match: XP_008456107.1 (PREDICTED: uncharacterized protein LOC103496144 isoform X2 [Cucumis melo])

HSP 1 Score: 102.4 bits (254), Expect = 1.6e-18
Identity = 52/66 (78.79%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 5  AAATTAALLCFLLLSA-AAVTVSADAADCIDGCFTACVQKDVRLMQRCEGKCRIKCGPDN 64
          +AA  AA+LC LLLSA A VTVSADAADCID CFTACVQKD R+MQRCEGKCRIKCGPDN
Sbjct: 4  SAAAAAAILCLLLLSAEAVVTVSADAADCIDACFTACVQKDTRVMQRCEGKCRIKCGPDN 63

Query: 65 EVEDLI 70
          +V++ I
Sbjct: 64 KVDENI 69

[Close]

BLAST of Sed0014181 vs. NCBI nr
Match: XP_016901882.1 (PREDICTED: uncharacterized protein LOC103496144 isoform X1 [Cucumis melo])

HSP 1 Score: 94.7 bits (234), Expect = 3.3e-16
Identity = 52/75 (69.33%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 5  AAATTAALLCFLLLSA-AAVTVSADAADCIDGCFTACVQKD---------VRLMQRCEGK 64
          +AA  AA+LC LLLSA A VTVSADAADCID CFTACVQKD          R+MQRCEGK
Sbjct: 4  SAAAAAAILCLLLLSAEAVVTVSADAADCIDACFTACVQKDNGWVGCCGAARVMQRCEGK 63

Query: 65 CRIKCGPDNEVEDLI 70
          CRIKCGPDN+V++ I
Sbjct: 64 CRIKCGPDNKVDENI 78

[Close]

BLAST of Sed0014181 vs. NCBI nr
Match: KAE8650509.1 (hypothetical protein Csa_010751 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 4.4e-13
Identity = 43/54 (79.63%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 8  TTAALLCFLLLSAAAVTVSADAADCIDGCFTACVQKDVRLMQRCEGKCRIKCGP 62
          +  A+LC LLLS A VTVSADAADCIDGCFTACVQKD R MQRCE KC IKCGP
Sbjct: 4  SAVAILCLLLLS-AVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGP 56

[Close]

BLAST of Sed0014181 vs. NCBI nr
Match: KYP63130.1 (Tubby-like F-box protein 8 [Cajanus cajan])

HSP 1 Score: 73.2 bits (178), Expect = 1.0e-09
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 10 AALLCFLLLSAAAVTVSADAADCIDGCFTACVQKDVRLMQRCEGKCRIKCGPDNE 65
          AA++  L++S+   +V  DA DCIDGC TACVQ+D RL  RCEGKC+IKCGP N+
Sbjct: 6  AAIMLLLVISSQMESVEPDATDCIDGCTTACVQRDSRLQARCEGKCKIKCGPGNQ 60

[Close]

BLAST of Sed0014181 vs. ExPASy TrEMBL
Match: A0A1S3C2J8 (uncharacterized protein LOC103496144 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496144 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 7.6e-19
Identity = 52/66 (78.79%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 5  AAATTAALLCFLLLSA-AAVTVSADAADCIDGCFTACVQKDVRLMQRCEGKCRIKCGPDN 64
          +AA  AA+LC LLLSA A VTVSADAADCID CFTACVQKD R+MQRCEGKCRIKCGPDN
Sbjct: 4  SAAAAAAILCLLLLSAEAVVTVSADAADCIDACFTACVQKDTRVMQRCEGKCRIKCGPDN 63

Query: 65 EVEDLI 70
          +V++ I
Sbjct: 64 KVDENI 69

[Close]

BLAST of Sed0014181 vs. ExPASy TrEMBL
Match: A0A1S4E0W4 (uncharacterized protein LOC103496144 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496144 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.6e-16
Identity = 52/75 (69.33%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 5  AAATTAALLCFLLLSA-AAVTVSADAADCIDGCFTACVQKD---------VRLMQRCEGK 64
          +AA  AA+LC LLLSA A VTVSADAADCID CFTACVQKD          R+MQRCEGK
Sbjct: 4  SAAAAAAILCLLLLSAEAVVTVSADAADCIDACFTACVQKDNGWVGCCGAARVMQRCEGK 63

Query: 65 CRIKCGPDNEVEDLI 70
          CRIKCGPDN+V++ I
Sbjct: 64 CRIKCGPDNKVDENI 78

[Close]

BLAST of Sed0014181 vs. ExPASy TrEMBL
Match: A0A0A0LC00 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G209970 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.5e-16
Identity = 47/60 (78.33%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 8  TTAALLCFLLLSAAAVTVSADAADCIDGCFTACVQKDVRLMQRCEGKCRIKCGPDNEVED 67
          +  A+LC LLLS A VTVSADAADCIDGCFTACVQKD R MQRCE KC IKCGPDN+VE+
Sbjct: 4  SAVAILCLLLLS-AVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNKVEE 62

[Close]

BLAST of Sed0014181 vs. ExPASy TrEMBL
Match: A0A151T7U7 (Tubby-like F-box protein OS=Cajanus cajan OX=3821 GN=KK1_017695 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.9e-10
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 10 AALLCFLLLSAAAVTVSADAADCIDGCFTACVQKDVRLMQRCEGKCRIKCGPDNE 65
          AA++  L++S+   +V  DA DCIDGC TACVQ+D RL  RCEGKC+IKCGP N+
Sbjct: 6  AAIMLLLVISSQMESVEPDATDCIDGCTTACVQRDSRLQARCEGKCKIKCGPGNQ 60

[Close]

BLAST of Sed0014181 vs. ExPASy TrEMBL
Match: A0A6A4NXS4 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00041291 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.5e-10
Identity = 31/58 (53.45%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 10 AALLCFLLLSAAAVTVSADAADCIDGCFTACVQKDVRLMQRCEGKCRIKCGPDNEVED 68
          A ++   ++ +   TV++DA+DC+D C TACVQ+D RLMQRC+ KC+IKCGPD++VE+
Sbjct: 11 AIIMLLFVICSQMETVNSDASDCLDACSTACVQRDTRLMQRCDRKCQIKCGPDSKVEE 68

[Close]

BLAST of Sed0014181 vs. TAIR 10
Match: AT1G25275.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 18 Blast hits to 18 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 51.2 bits (121), Expect = 3.9e-07
Identity = 28/64 (43.75%), Postives = 34/64 (53.12%), Query Frame = 0


Query: 1  MGKPAAATTAALLCFLLLSAAAVTVSAD--AADCIDGCFTACVQKDVRLMQRCEGKCRIK 60
          M K      A L+   L S+  +   A     DC DGC TACVQ+D R   RC+ KC I+
Sbjct: 2  MKKQVTIVAALLIMMALCSSLNMVAEAQLGPGDCYDGCSTACVQRDPRKTSRCDRKCSIR 61

Query: 61 CGPD 63
          CGPD
Sbjct: 62 CGPD 65

[Close]

BLAST of Sed0014181 vs. TAIR 10
Match: AT1G25275.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 50.1 bits (118), Expect = 8.6e-07
Identity = 28/68 (41.18%), Postives = 34/68 (50.00%), Query Frame = 0


Query: 1  MGKPAAATTAALLCFLLLSAAAVTVSAD--AADCIDGCFTACVQKDVRLMQRCEGKCRIK 60
          M K      A L+   L S+  +   A     DC DGC TACVQ+D R   RC+ KC I+
Sbjct: 2  MKKQVTIVAALLIMMALCSSLNMVAEAQLGPGDCYDGCSTACVQRDPRKTSRCDRKCSIR 61

Query: 61 CGPDNEVE 67
          CGP    E
Sbjct: 62 CGPGKHYE 69

[Close]

BLAST of Sed0014181 vs. TAIR 10
Match: AT1G25275.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 48.9 bits (115), Expect = 1.9e-06
Identity = 27/64 (42.19%), Postives = 33/64 (51.56%), Query Frame = 0


Query: 1  MGKPAAATTAALLCFLLLSAAAVTVSAD--AADCIDGCFTACVQKDVRLMQRCEGKCRIK 60
          M K      A L+   L S+  +   A     DC DGC TACVQ+D     RC+ KC I+
Sbjct: 2  MKKQVTIVAALLIMMALCSSLNMVAEAQLGPGDCYDGCSTACVQRDREKTSRCDRKCSIR 61

Query: 61 CGPD 63
          CGPD
Sbjct: 62 CGPD 65

The following BLAST results are available for this feature:

BLAST of Sed0014181 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600340.1	8.9e-22	81.69	hypothetical protein SDJN03_05573, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_008456107.1	1.6e-18	78.79	PREDICTED: uncharacterized protein LOC103496144 isoform X2 [Cucumis melo]	[more]
XP_016901882.1	3.3e-16	69.33	PREDICTED: uncharacterized protein LOC103496144 isoform X1 [Cucumis melo]	[more]
KAE8650509.1	4.4e-13	79.63	hypothetical protein Csa_010751 [Cucumis sativus]	[more]
KYP63130.1	1.0e-09	60.00	Tubby-like F-box protein 8 [Cajanus cajan]	[more]

BLAST of Sed0014181 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0014181 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C2J8	7.6e-19	78.79	uncharacterized protein LOC103496144 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4E0W4	1.6e-16	69.33	uncharacterized protein LOC103496144 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0LC00	3.5e-16	78.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G209970 PE=4 SV=1	[more]
A0A151T7U7	4.9e-10	60.00	Tubby-like F-box protein OS=Cajanus cajan OX=3821 GN=KK1_017695 PE=3 SV=1	[more]
A0A6A4NXS4	6.5e-10	53.45	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00041291 PE=4 SV=1	[more]

BLAST of Sed0014181 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G25275.1	3.9e-07	43.75	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response...	[more]
AT1G25275.3	8.6e-07	41.18	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response...	[more]
AT1G25275.2	1.9e-06	42.19	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37183	PLANT THIONIN FAMILY PROTEIN	coord: 9..67
None	No IPR available	PANTHER	PTHR37183:SF1	PLANT THIONIN FAMILY PROTEIN	coord: 9..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0014181.1	Sed0014181.1	mRNA