Sed0014101 (gene) Chayote v1

Overview
NameSed0014101
Typegene
OrganismSechium edule (Chayote v1)
DescriptionWD repeat-containing protein 53
LocationLG08: 35883479 .. 35883955 (+)
RNA-Seq ExpressionSed0014101
SyntenySed0014101
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAACTGAAAGCCAGCAGATTTTGGAAAATTTCGAGTCTCTTTGGTTCTTCGCCACCGTATTTTCCGACCAACCGCCGCCGCCGGCCGGTATAAATCTCCAAAATCCCACTCAAAGCGACGCCGTTGAGCCAATCGGAGAAGAAATCGCGACACCCATTTTTCAAAATCAGCAAAATGTGGATGAAAGAAGAATCGAAGATTGTGATGGGTCTGAAATGAAAACAGAGGAGAAGAGAAAAAGCAGAATTAGAAGAAGATCTTGTTGTTGGAGCCAGAGGAGAAAAATTGTGGGAGAAATGGATCTGAGTAATTCTGTGAAGGAGATTTGTGAATGTTGGGTGTTGGAAGAGAGAATTAGAAATGGGAATTATTATCAGATGAAGAAGAAAAAGATGGCTTCAATTGAAGATGATATGGCGATGAAAGAGCACATTAGATCGTGGGCTTATGCAGTGGCTTGTGCTGTTAGATGA

mRNA sequence

ATGGAAACTGAAAGCCAGCAGATTTTGGAAAATTTCGAGTCTCTTTGGTTCTTCGCCACCGTATTTTCCGACCAACCGCCGCCGCCGGCCGGTATAAATCTCCAAAATCCCACTCAAAGCGACGCCGTTGAGCCAATCGGAGAAGAAATCGCGACACCCATTTTTCAAAATCAGCAAAATGTGGATGAAAGAAGAATCGAAGATTGTGATGGGTCTGAAATGAAAACAGAGGAGAAGAGAAAAAGCAGAATTAGAAGAAGATCTTGTTGTTGGAGCCAGAGGAGAAAAATTGTGGGAGAAATGGATCTGAGTAATTCTGTGAAGGAGATTTGTGAATGTTGGGTGTTGGAAGAGAGAATTAGAAATGGGAATTATTATCAGATGAAGAAGAAAAAGATGGCTTCAATTGAAGATGATATGGCGATGAAAGAGCACATTAGATCGTGGGCTTATGCAGTGGCTTGTGCTGTTAGATGA

Coding sequence (CDS)

ATGGAAACTGAAAGCCAGCAGATTTTGGAAAATTTCGAGTCTCTTTGGTTCTTCGCCACCGTATTTTCCGACCAACCGCCGCCGCCGGCCGGTATAAATCTCCAAAATCCCACTCAAAGCGACGCCGTTGAGCCAATCGGAGAAGAAATCGCGACACCCATTTTTCAAAATCAGCAAAATGTGGATGAAAGAAGAATCGAAGATTGTGATGGGTCTGAAATGAAAACAGAGGAGAAGAGAAAAAGCAGAATTAGAAGAAGATCTTGTTGTTGGAGCCAGAGGAGAAAAATTGTGGGAGAAATGGATCTGAGTAATTCTGTGAAGGAGATTTGTGAATGTTGGGTGTTGGAAGAGAGAATTAGAAATGGGAATTATTATCAGATGAAGAAGAAAAAGATGGCTTCAATTGAAGATGATATGGCGATGAAAGAGCACATTAGATCGTGGGCTTATGCAGTGGCTTGTGCTGTTAGATGA

Protein sequence

METESQQILENFESLWFFATVFSDQPPPPAGINLQNPTQSDAVEPIGEEIATPIFQNQQNVDERRIEDCDGSEMKTEEKRKSRIRRRSCCWSQRRKIVGEMDLSNSVKEICECWVLEERIRNGNYYQMKKKKMASIEDDMAMKEHIRSWAYAVACAVR
Homology
BLAST of Sed0014101 vs. NCBI nr
Match: XP_022927166.1 (uncharacterized protein LOC111434099 [Cucurbita moschata])

HSP 1 Score: 190.3 bits (482), Expect = 1.3e-44
Identity = 109/168 (64.88%), Postives = 123/168 (73.21%), Query Frame = 0

Query: 4   ESQQILENFESLWFFATVFSDQPPPPAGINLQNPTQSDAVEPIGEEIATPIFQNQQNV-D 63
           E QQ+L+N +SLWFFATVFS++ PPP    +Q PTQ D VEP G EIATPIFQNQQNV +
Sbjct: 2   EDQQVLQNLDSLWFFATVFSNRTPPPV---VQKPTQHDFVEPPGGEIATPIFQNQQNVGE 61

Query: 64  ERRIEDCDGSE-------MKTEEKRKSRIRRRSCCWSQRRKIVGEMDLSNSVKEICECWV 123
           ER I D   +E       + TEE+RKSR RR  C   QRRKIVGEMDLS++VKEICECW+
Sbjct: 62  ERNIVDEKTNETGGGLGLIITEERRKSRGRRWGCL-GQRRKIVGEMDLSDAVKEICECWL 121

Query: 124 LEERIRNGNYYQ-----MKKKKMASIEDDMAMKEHIRSWAYAVACAVR 159
           LE+RI  GN YQ     MKKKKM   ED MAMKEHIRSWAYAVAC VR
Sbjct: 122 LEQRIGGGNQYQRGGRKMKKKKMPPFEDSMAMKEHIRSWAYAVACTVR 165

BLAST of Sed0014101 vs. NCBI nr
Match: KAG7019562.1 (hypothetical protein SDJN02_18523, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 189.9 bits (481), Expect = 1.7e-44
Identity = 108/168 (64.29%), Postives = 124/168 (73.81%), Query Frame = 0

Query: 4   ESQQILENFESLWFFATVFSDQPPPPAGINLQNPTQSDAVEPIGEEIATPIFQNQQNV-D 63
           E QQ+L+N +SLWFFATVFS++ PPP  + +Q PTQ D VEP G EIATPIFQNQQNV +
Sbjct: 2   EDQQVLQNLDSLWFFATVFSNRTPPPPPV-VQKPTQHDFVEPPGGEIATPIFQNQQNVGE 61

Query: 64  ERRIEDCDGSE-------MKTEEKRKSRIRRRSCCWSQRRKIVGEMDLSNSVKEICECWV 123
           ER I D   +E       + TEE+RKSR RR  C   QRRKIVGEMDLS++VKEICECW+
Sbjct: 62  ERNIVDEKTNETGGGLGLIITEERRKSRGRRWGCL-GQRRKIVGEMDLSDAVKEICECWL 121

Query: 124 LEERIRNGNYY-----QMKKKKMASIEDDMAMKEHIRSWAYAVACAVR 159
           LE+RI  GN Y     +MKKKKM   ED MAMKEHIRSWAYAVAC VR
Sbjct: 122 LEQRIGGGNQYRRGRRKMKKKKMPPFEDSMAMKEHIRSWAYAVACTVR 167

BLAST of Sed0014101 vs. NCBI nr
Match: XP_023520136.1 (uncharacterized protein LOC111783440 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 188.7 bits (478), Expect = 3.8e-44
Identity = 109/172 (63.37%), Postives = 125/172 (72.67%), Query Frame = 0

Query: 4   ESQQILENFESLWFFATVFSDQ----PPPPAGINLQNPTQSDAVEPIGEEIATPIFQNQQ 63
           E QQ+L+N +SLWFFATVFS++    PPPP    +Q PTQ+D VEP G EIATPIFQNQQ
Sbjct: 2   EDQQVLQNLDSLWFFATVFSNRTPPPPPPPPPPVVQKPTQNDFVEPPGGEIATPIFQNQQ 61

Query: 64  NV-DERRIEDCDGSE-------MKTEEKRKSRIRRRSCCWSQRRKIVGEMDLSNSVKEIC 123
           NV +ER I D   +E       + TEE+RKSR RR  C   QRRKIVGEMDLS++VKEIC
Sbjct: 62  NVGEERNIVDEKTNETGGGLGLIITEERRKSRGRRWGCL-GQRRKIVGEMDLSDAVKEIC 121

Query: 124 ECWVLEERIRNGNYYQ-----MKKKKMASIEDDMAMKEHIRSWAYAVACAVR 159
           ECW+LE+RI  GN YQ     MKKKKM   ED MAMKEHIRSWA+AVAC VR
Sbjct: 122 ECWLLEQRIGGGNQYQRGRRKMKKKKMPPFEDSMAMKEHIRSWAFAVACIVR 172

BLAST of Sed0014101 vs. NCBI nr
Match: XP_038895160.1 (uncharacterized protein LOC120083464 [Benincasa hispida])

HSP 1 Score: 188.7 bits (478), Expect = 3.8e-44
Identity = 105/163 (64.42%), Postives = 122/163 (74.85%), Query Frame = 0

Query: 4   ESQQILENFESLWFFATVFSDQ-PPPPAGINLQNPTQSDAVEPIGEEIATPIFQNQQN-- 63
           E QQ+LEN++SLWFFATVFS++ PPPP    ++NPTQ+D VEP GEEIATP+  N+QN  
Sbjct: 2   EGQQVLENWDSLWFFATVFSNRTPPPPPPPVVENPTQNDFVEPPGEEIATPLTPNEQNNV 61

Query: 64  VDERRIEDCDGSEMKTEEKRKSRIRRRSCCW--SQRRKIVGEMDLSNSVKEICECWVLEE 123
            DE++IE+  G  +KTEEK + R  R   CW   QRRKIVGEMDLS +VKEICECW+ EE
Sbjct: 62  GDEKKIENGGGFGIKTEEKEQRRKNRGRRCWGLEQRRKIVGEMDLSYAVKEICECWLFEE 121

Query: 124 -RIRNGNYYQMKK--KKMASIEDDMAMKEHIRSWAYAVACAVR 159
            RI  GN YQ KK  KKM   ED MAMKEHIRSWAYAVAC VR
Sbjct: 122 TRIGGGNQYQRKKKTKKMPPFEDSMAMKEHIRSWAYAVACTVR 164

BLAST of Sed0014101 vs. NCBI nr
Match: KAG6583945.1 (hypothetical protein SDJN03_19877, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 187.2 bits (474), Expect = 1.1e-43
Identity = 108/170 (63.53%), Postives = 124/170 (72.94%), Query Frame = 0

Query: 4   ESQQILENFESLWFFATVFSDQ--PPPPAGINLQNPTQSDAVEPIGEEIATPIFQNQQNV 63
           E QQ+L+N +SLWFFATVFS++  PPPP    +Q PTQ+D  EP G EIATPIFQNQQNV
Sbjct: 2   EDQQVLQNLDSLWFFATVFSNRTPPPPPPPPVVQKPTQNDFDEPPGGEIATPIFQNQQNV 61

Query: 64  -DERRIEDCDGSE-------MKTEEKRKSRIRRRSCCWSQRRKIVGEMDLSNSVKEICEC 123
            +ER I D   +E       + TEE+RKSR RR  C   QRRKIVGEMDLS++VKEICEC
Sbjct: 62  GEERNIVDEKTNETGGGLGLIITEERRKSRGRRWGCL-GQRRKIVGEMDLSDAVKEICEC 121

Query: 124 WVLEERIRNGNYY-----QMKKKKMASIEDDMAMKEHIRSWAYAVACAVR 159
           W+LE+RI  GN Y     +MKKKKM   ED MAMKEHIRSWAYAVAC VR
Sbjct: 122 WLLEQRIGGGNQYRRGRRKMKKKKMPPFEDSMAMKEHIRSWAYAVACTVR 170

BLAST of Sed0014101 vs. ExPASy TrEMBL
Match: A0A6J1EGY0 (uncharacterized protein LOC111434099 OS=Cucurbita moschata OX=3662 GN=LOC111434099 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 6.3e-45
Identity = 109/168 (64.88%), Postives = 123/168 (73.21%), Query Frame = 0

Query: 4   ESQQILENFESLWFFATVFSDQPPPPAGINLQNPTQSDAVEPIGEEIATPIFQNQQNV-D 63
           E QQ+L+N +SLWFFATVFS++ PPP    +Q PTQ D VEP G EIATPIFQNQQNV +
Sbjct: 2   EDQQVLQNLDSLWFFATVFSNRTPPPV---VQKPTQHDFVEPPGGEIATPIFQNQQNVGE 61

Query: 64  ERRIEDCDGSE-------MKTEEKRKSRIRRRSCCWSQRRKIVGEMDLSNSVKEICECWV 123
           ER I D   +E       + TEE+RKSR RR  C   QRRKIVGEMDLS++VKEICECW+
Sbjct: 62  ERNIVDEKTNETGGGLGLIITEERRKSRGRRWGCL-GQRRKIVGEMDLSDAVKEICECWL 121

Query: 124 LEERIRNGNYYQ-----MKKKKMASIEDDMAMKEHIRSWAYAVACAVR 159
           LE+RI  GN YQ     MKKKKM   ED MAMKEHIRSWAYAVAC VR
Sbjct: 122 LEQRIGGGNQYQRGGRKMKKKKMPPFEDSMAMKEHIRSWAYAVACTVR 165

BLAST of Sed0014101 vs. ExPASy TrEMBL
Match: A0A6J1KF61 (uncharacterized protein LOC111495257 OS=Cucurbita maxima OX=3661 GN=LOC111495257 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 5.0e-42
Identity = 106/172 (61.63%), Postives = 123/172 (71.51%), Query Frame = 0

Query: 4   ESQQILENFESLWFFATVFSDQ----PPPPAGINLQNPTQSDAVEPIGEEIATPIFQNQQ 63
           E QQ+L+N +SLWFFATVFS++    PP P    +Q PT++D VE  G EIATPIFQNQQ
Sbjct: 2   EDQQVLQNLDSLWFFATVFSNKMPPAPPSPPTPVVQKPTENDFVELPGGEIATPIFQNQQ 61

Query: 64  NV-DERRIEDCDGSE-------MKTEEKRKSRIRRRSCCWSQRRKIVGEMDLSNSVKEIC 123
           NV DER I D   +E       + TEE+RKSR RR  C   QRR+IVGEMDLS++VKEIC
Sbjct: 62  NVGDERNIVDEKTNETGGGFGSIITEERRKSRGRRWGCL-RQRREIVGEMDLSDAVKEIC 121

Query: 124 ECWVLEERIRNGNYYQ-----MKKKKMASIEDDMAMKEHIRSWAYAVACAVR 159
           ECW+LE+RI  GN YQ     MKKKK+   ED MAMKEHIRSWAYAVAC VR
Sbjct: 122 ECWLLEQRIGGGNQYQRGRRKMKKKKIPPFEDSMAMKEHIRSWAYAVACTVR 172

BLAST of Sed0014101 vs. ExPASy TrEMBL
Match: A0A0A0LX63 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G470250 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.4e-33
Identity = 91/160 (56.88%), Postives = 108/160 (67.50%), Query Frame = 0

Query: 4   ESQQILENFESLWFFATVFSDQPPPPAGINLQNPTQSDAVEPIGEEIATPIFQNQQNVDE 63
           E QQ+LENF+SLWFFATVFS++ PP  G     P Q+D V  +GEEIATPI +N++N   
Sbjct: 2   EGQQVLENFDSLWFFATVFSNRTPPVVG----KPIQNDFVGSLGEEIATPITRNEEN--- 61

Query: 64  RRIEDCDGSEMKTEEKRKSRIRR---RSCCWSQRRK-IVGEMDLSNSVKEICECWVLEE- 123
                C+  EM+TEE+ + R +    RS    QR+K IVGE+DLS +VKEICECW  EE 
Sbjct: 62  ---NVCEAKEMETEEREEKRRKNRGGRSWGLEQRKKFIVGEIDLSYAVKEICECWSFEEM 121

Query: 124 RIRNGNYYQMKKKKMASIEDDMAMKEHIRSWAYAVACAVR 159
           RI  G     K KKM S ED MAMKEHIRSWAYAVAC VR
Sbjct: 122 RIGGGE----KTKKMPSFEDSMAMKEHIRSWAYAVACTVR 147

BLAST of Sed0014101 vs. ExPASy TrEMBL
Match: A0A5A7UQZ2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G002450 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 3.2e-33
Identity = 90/157 (57.32%), Postives = 109/157 (69.43%), Query Frame = 0

Query: 4   ESQQILENFESLWFFATVFSDQPPPPAGINLQNPTQSDAVEPIGEEIATPIFQNQQNVDE 63
           E QQ+ ENF+SLWFF+TVFS++ PP     ++ P Q+D VEP+GEEIATPI +N++N D 
Sbjct: 2   EGQQVFENFDSLWFFSTVFSNRTPPV----VEKPIQNDFVEPLGEEIATPITRNEEN-DV 61

Query: 64  RRIEDCDGSEMKTEEKRKSRIRRRSCCWSQRRK-IVGEMDLSNSVKEICECWVLE-ERIR 123
              ++ +  EM  EEKR+    RRS    QRRK +VGE+DLS +VKEICECW  E  RI 
Sbjct: 62  GEEKEMETEEM--EEKRRKNRGRRSWGLEQRRKFVVGEIDLSYAVKEICECWSFEVMRIG 121

Query: 124 NGNYYQMKKKKMASIEDDMAMKEHIRSWAYAVACAVR 159
            G     K KKM S ED MAMKEHIRSWAYAVAC VR
Sbjct: 122 GGK----KTKKMPSFEDSMAMKEHIRSWAYAVACTVR 147

BLAST of Sed0014101 vs. ExPASy TrEMBL
Match: A0A1S3B8X4 (uncharacterized protein LOC103487056 OS=Cucumis melo OX=3656 GN=LOC103487056 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 3.2e-33
Identity = 90/157 (57.32%), Postives = 109/157 (69.43%), Query Frame = 0

Query: 4   ESQQILENFESLWFFATVFSDQPPPPAGINLQNPTQSDAVEPIGEEIATPIFQNQQNVDE 63
           E QQ+ ENF+SLWFF+TVFS++ PP     ++ P Q+D VEP+GEEIATPI +N++N D 
Sbjct: 2   EGQQVFENFDSLWFFSTVFSNRTPPV----VEKPIQNDFVEPLGEEIATPITRNEEN-DV 61

Query: 64  RRIEDCDGSEMKTEEKRKSRIRRRSCCWSQRRK-IVGEMDLSNSVKEICECWVLE-ERIR 123
              ++ +  EM  EEKR+    RRS    QRRK +VGE+DLS +VKEICECW  E  RI 
Sbjct: 62  GEEKEMETEEM--EEKRRKNRGRRSWGLEQRRKFVVGEIDLSYAVKEICECWSFEVMRIG 121

Query: 124 NGNYYQMKKKKMASIEDDMAMKEHIRSWAYAVACAVR 159
            G     K KKM S ED MAMKEHIRSWAYAVAC VR
Sbjct: 122 GGK----KTKKMPSFEDSMAMKEHIRSWAYAVACTVR 147

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022927166.11.3e-4464.88uncharacterized protein LOC111434099 [Cucurbita moschata][more]
KAG7019562.11.7e-4464.29hypothetical protein SDJN02_18523, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023520136.13.8e-4463.37uncharacterized protein LOC111783440 [Cucurbita pepo subsp. pepo][more]
XP_038895160.13.8e-4464.42uncharacterized protein LOC120083464 [Benincasa hispida][more]
KAG6583945.11.1e-4363.53hypothetical protein SDJN03_19877, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1EGY06.3e-4564.88uncharacterized protein LOC111434099 OS=Cucurbita moschata OX=3662 GN=LOC1114340... [more]
A0A6J1KF615.0e-4261.63uncharacterized protein LOC111495257 OS=Cucurbita maxima OX=3661 GN=LOC111495257... [more]
A0A0A0LX631.4e-3356.88Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G470250 PE=4 SV=1[more]
A0A5A7UQZ23.2e-3357.32Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3B8X43.2e-3357.32uncharacterized protein LOC103487056 OS=Cucumis melo OX=3656 GN=LOC103487056 PE=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33785FAMILY NOT NAMEDcoord: 46..158
coord: 4..39
NoneNo IPR availablePANTHERPTHR33785:SF8SUBFAMILY NOT NAMEDcoord: 46..158
coord: 4..39

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0014101.1Sed0014101.1mRNA