Sed0014053 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATGAGCTAGATGGAGAGACTTATGCCAAAGTACTCAAACTTTTGCATGGAGATGTTACTTGGAGAAAGATATTTTTGCGCATACCCGATGCAAGGAAGAGAGATTTGATTTATAGTCTTTAGATCTTGCTGTGAGCTTTTGTAGCCATCTCATTCATAGAAGAAAATTGTTTGAGAATGATATCTTTTGTATTTTTTATATAACTTACTTTCTCGCGTACTAAACTTATACATTTTGTTATGTGGTTTGATTATATAATTTCATGTTTTCCATGTTTTATTCAGGGATATCTTTATGGATTTAATTGAAGAGAATGACTTGGATTATGATTCTGACGGCGACGATGATGTTGTATACATCTTTTTTGGTTTAATAAATGGTTTTGACAAGCTGCACTCTTCTAGACAACCATGTAGAACGTCTTTACTCAAAGGTCATGATTATGTGATTGAGTTATTGAATGGAAACGACACAAGATGTTTTGATTGCTTTAGGATGAAAAAAGATACATTCGTAGCTTTTTGTGAAGATTTAAAAGCGAAGACAAATTTGAAAGCATCTAGATATCTTTCTGTTCAAGAGAAAGTTGCCATTTTTTTATTAGTCATATCACATAATGAAAGAAATCGTATAGTAGCTGAAAGGTTTCAACATTCAGGTCAAACTATTTCTCGAGTTTTTAACATTGTTTTGAAAAAAGTTTGCAAGCTTGGTGTTGAAATTATTTGTCCACCCGACGGAGATAATATACCACAAGAGATTAGATCGAAGTCTAAATACTTCCCATTTTTCAAGGTAAGAGCTTAA ATGGATGAGCTAGATGGAGAGACTTATGCCAAAGTACTCAAACTTTTGCATGGAGATGTTACTTGGAGAAAGATATTTTTGCGCATACCCGATGCAAGGAAGAGAGATTTGATTTATAGTCATGATTATGTGATTGAGTTATTGAATGGAAACGACACAAGATGTTTTGATTGCTTTAGGATGAAAAAAGATACATTCGTAGCTTTTTGTGAAGATTTAAAAGCGAAGACAAATTTGAAAGCATCTAGATATCTTTCTGTTCAAGAGAAAGTTGCCATTTTTTTATTAGTCATATCACATAATGAAAGAAATCGTATAGTAGCTGAAAGGTTTCAACATTCAGGTCAAACTATTTCTCGAGTTTTTAACATTGTTTTGAAAAAAGTTTGCAAGCTTGGTGTTGAAATTATTTGTCCACCCGACGGAGATAATATACCACAAGAGATTAGATCGAAGTCTAAATACTTCCCATTTTTCAAGGTAAGAGCTTAA ATGGATGAGCTAGATGGAGAGACTTATGCCAAAGTACTCAAACTTTTGCATGGAGATGTTACTTGGAGAAAGATATTTTTGCGCATACCCGATGCAAGGAAGAGAGATTTGATTTATAGTCATGATTATGTGATTGAGTTATTGAATGGAAACGACACAAGATGTTTTGATTGCTTTAGGATGAAAAAAGATACATTCGTAGCTTTTTGTGAAGATTTAAAAGCGAAGACAAATTTGAAAGCATCTAGATATCTTTCTGTTCAAGAGAAAGTTGCCATTTTTTTATTAGTCATATCACATAATGAAAGAAATCGTATAGTAGCTGAAAGGTTTCAACATTCAGGTCAAACTATTTCTCGAGTTTTTAACATTGTTTTGAAAAAAGTTTGCAAGCTTGGTGTTGAAATTATTTGTCCACCCGACGGAGATAATATACCACAAGAGATTAGATCGAAGTCTAAATACTTCCCATTTTTCAAGGTAAGAGCTTAA MDELDGETYAKVLKLLHGDVTWRKIFLRIPDARKRDLIYSHDYVIELLNGNDTRCFDCFRMKKDTFVAFCEDLKAKTNLKASRYLSVQEKVAIFLLVISHNERNRIVAERFQHSGQTISRVFNIVLKKVCKLGVEIICPPDGDNIPQEIRSKSKYFPFFKVRA Homology
BLAST of Sed0014053 vs. NCBI nr
Match: KAF3433792.1 (hypothetical protein FNV43_RR24895 [Rhamnella rubrinervis]) HSP 1 Score: 199.1 bits (505), Expect = 2.9e-47 Identity = 102/189 (53.97%), Postives = 128/189 (67.72%), Query Frame = 0
BLAST of Sed0014053 vs. NCBI nr
Match: KAF7123090.1 (hypothetical protein RHSIM_Rhsim12G0067000 [Rhododendron simsii]) HSP 1 Score: 186.8 bits (473), Expect = 1.5e-43 Identity = 97/209 (46.41%), Postives = 122/209 (58.37%), Query Frame = 0
BLAST of Sed0014053 vs. NCBI nr
Match: KAF7148819.1 (hypothetical protein RHSIM_Rhsim03G0151700 [Rhododendron simsii]) HSP 1 Score: 186.4 bits (472), Expect = 1.9e-43 Identity = 96/210 (45.71%), Postives = 122/210 (58.10%), Query Frame = 0
BLAST of Sed0014053 vs. NCBI nr
Match: XP_028094390.1 (uncharacterized protein LOC114294454 [Camellia sinensis]) HSP 1 Score: 159.8 bits (403), Expect = 1.9e-35 Identity = 73/131 (55.73%), Postives = 95/131 (72.52%), Query Frame = 0
BLAST of Sed0014053 vs. NCBI nr
Match: XP_030481634.1 (protein ALP1-like [Cannabis sativa]) HSP 1 Score: 159.8 bits (403), Expect = 1.9e-35 Identity = 77/170 (45.29%), Postives = 110/170 (64.71%), Query Frame = 0
BLAST of Sed0014053 vs. ExPASy TrEMBL
Match: A0A0A0LCZ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G398940 PE=4 SV=1) HSP 1 Score: 170.6 bits (431), Expect = 5.3e-39 Identity = 94/178 (52.81%), Postives = 106/178 (59.55%), Query Frame = 0
BLAST of Sed0014053 vs. ExPASy TrEMBL
Match: A0A6A4KNZ4 (Myb_DNA-bind_3 domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_22962 PE=4 SV=1) HSP 1 Score: 140.2 bits (352), Expect = 7.7e-30 Identity = 71/144 (49.31%), Postives = 93/144 (64.58%), Query Frame = 0
BLAST of Sed0014053 vs. ExPASy TrEMBL
Match: A0A2N9GND4 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28895 PE=3 SV=1) HSP 1 Score: 132.1 bits (331), Expect = 2.1e-27 Identity = 63/129 (48.84%), Postives = 93/129 (72.09%), Query Frame = 0
BLAST of Sed0014053 vs. ExPASy TrEMBL
Match: A0A1S3E695 (protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1-like OS=Cicer arietinum OX=3827 GN=LOC105852030 PE=3 SV=1) HSP 1 Score: 129.4 bits (324), Expect = 1.4e-26 Identity = 60/119 (50.42%), Postives = 86/119 (72.27%), Query Frame = 0
BLAST of Sed0014053 vs. ExPASy TrEMBL
Match: A0A3Q7Y331 (protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1-like OS=Cicer arietinum OX=3827 GN=LOC105852522 PE=3 SV=1) HSP 1 Score: 129.4 bits (324), Expect = 1.4e-26 Identity = 60/119 (50.42%), Postives = 86/119 (72.27%), Query Frame = 0
BLAST of Sed0014053 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 77.8 bits (190), Expect = 9.0e-15 Identity = 38/97 (39.18%), Postives = 59/97 (60.82%), Query Frame = 0
BLAST of Sed0014053 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 73.6 bits (179), Expect = 1.7e-13 Identity = 40/111 (36.04%), Postives = 62/111 (55.86%), Query Frame = 0
BLAST of Sed0014053 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). ) HSP 1 Score: 59.7 bits (143), Expect = 2.5e-09 Identity = 33/108 (30.56%), Postives = 52/108 (48.15%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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