Sed0013923 (gene) Chayote v1

Overview


Name	Sed0013923
Type	gene
Organism	Sechium edule (Chayote v1)
Description	DNA topoisomerase I
Location	LG10: 19670402 .. 19670694 (+)
RNA-Seq Expression	Sed0013923
Synteny	Sed0013923

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCGAGATATGCAGACTAAAGAGGATTTGAAAACTGTGGCATTGGGCACATCGAAGATCAACTACCTTGATCCTCGAATCACAGTTGCATGGTGCAAGCGTCATGAAGTCCCGATCGAAAAGGTGAGCAGCATTTTGTTGCCATTCTTGGTGCACTATTTGACATTTTGAATCAAACTGTTTCCTAAATTTTCTCTCTTCCATTTCTTCTACTTCCATAGATATTCAATAAGTCTCTTCTAGCTAAGTTTTCTTGGGCAATGGACGTGGATCCCGACTTCAGATTCTGA

mRNA sequence

ATGGAGCGAGATATGCAGACTAAAGAGGATTTGAAAACTGTGGCATTGGGCACATCGAAGATCAACTACCTTGATCCTCGAATCACAGTTGCATGGTGCAAGCGTCATGAAGTCCCGATCGAAAAGATATTCAATAAGTCTCTTCTAGCTAAGTTTTCTTGGGCAATGGACGTGGATCCCGACTTCAGATTCTGA

Coding sequence (CDS)

ATGGAGCGAGATATGCAGACTAAAGAGGATTTGAAAACTGTGGCATTGGGCACATCGAAGATCAACTACCTTGATCCTCGAATCACAGTTGCATGGTGCAAGCGTCATGAAGTCCCGATCGAAAAGATATTCAATAAGTCTCTTCTAGCTAAGTTTTCTTGGGCAATGGACGTGGATCCCGACTTCAGATTCTGA

Protein sequence

MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF

Homology

[Close]

BLAST of Sed0013923 vs. NCBI nr
Match: MBA0716522.1 (hypothetical protein [Gossypium laxum])

HSP 1 Score: 136.0 bits (341), Expect = 1.2e-28
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1   MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDP 60
           MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF+WAMDVDP
Sbjct: 841 MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDP 900

Query: 61  DFRF 65
           DFRF
Sbjct: 901 DFRF 904

[Close]

BLAST of Sed0013923 vs. NCBI nr
Match: KAB2059363.1 (hypothetical protein ES319_A11G297100v1 [Gossypium barbadense] >KAB2059364.1 hypothetical protein ES319_A11G297100v1 [Gossypium barbadense] >KAB2059365.1 hypothetical protein ES319_A11G297100v1 [Gossypium barbadense] >TYG96148.1 hypothetical protein ES288_A11G324700v1 [Gossypium darwinii])

HSP 1 Score: 136.0 bits (341), Expect = 1.2e-28
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1   MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDP 60
           MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF+WAMDVDP
Sbjct: 839 MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDP 898

Query: 61  DFRF 65
           DFRF
Sbjct: 899 DFRF 902

[Close]

BLAST of Sed0013923 vs. NCBI nr
Match: XP_016684952.1 (DNA topoisomerase 1 alpha [Gossypium hirsutum] >XP_016684953.1 DNA topoisomerase 1 alpha [Gossypium hirsutum] >XP_016684954.1 DNA topoisomerase 1 alpha [Gossypium hirsutum] >XP_016684955.1 DNA topoisomerase 1 alpha [Gossypium hirsutum] >XP_016684956.1 DNA topoisomerase 1 alpha [Gossypium hirsutum] >XP_016684957.1 DNA topoisomerase 1 alpha [Gossypium hirsutum] >XP_016684958.1 DNA topoisomerase 1 alpha [Gossypium hirsutum] >XP_016684959.1 DNA topoisomerase 1 alpha [Gossypium hirsutum] >KAG4150142.1 hypothetical protein ERO13_D05G377000v2 [Gossypium hirsutum] >KAG4150143.1 hypothetical protein ERO13_D05G377000v2 [Gossypium hirsutum] >KAG4150144.1 hypothetical protein ERO13_D05G377000v2 [Gossypium hirsutum] >KAG4150145.1 hypothetical protein ERO13_D05G377000v2 [Gossypium hirsutum] >KAG4150146.1 hypothetical protein ERO13_D05G377000v2 [Gossypium hirsutum])

HSP 1 Score: 136.0 bits (341), Expect = 1.2e-28
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1   MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDP 60
           MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF+WAMDVDP
Sbjct: 838 MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDP 897

Query: 61  DFRF 65
           DFRF
Sbjct: 898 DFRF 901

[Close]

BLAST of Sed0013923 vs. NCBI nr
Match: XP_039072279.1 (DNA topoisomerase 1 alpha-like isoform X2 [Hibiscus syriacus])

HSP 1 Score: 136.0 bits (341), Expect = 1.2e-28
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1   MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDP 60
           MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF+WAMDVDP
Sbjct: 712 MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDP 771

Query: 61  DFRF 65
           DFRF
Sbjct: 772 DFRF 775

[Close]

BLAST of Sed0013923 vs. NCBI nr
Match: TYG47376.1 (hypothetical protein ES288_D11G333200v1 [Gossypium darwinii])

HSP 1 Score: 136.0 bits (341), Expect = 1.2e-28
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1   MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDP 60
           MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF+WAMDVDP
Sbjct: 843 MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDP 902

Query: 61  DFRF 65
           DFRF
Sbjct: 903 DFRF 906

[Close]

BLAST of Sed0013923 vs. ExPASy Swiss-Prot
Match: Q9FJ79 (DNA topoisomerase 1 beta OS=Arabidopsis thaliana OX=3702 GN=TOP1B PE=1 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.9e-30
Identity = 59/64 (92.19%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1   MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDP 60
           MERDMQTKED+KTVALGTSKINY+DPRITVAWCKRH+VPIEKIFNKSLLAKF+WAMDVDP
Sbjct: 848 MERDMQTKEDMKTVALGTSKINYMDPRITVAWCKRHDVPIEKIFNKSLLAKFAWAMDVDP 907

Query: 61  DFRF 65
           +FRF
Sbjct: 908 EFRF 911

[Close]

BLAST of Sed0013923 vs. ExPASy Swiss-Prot
Match: P30181 (DNA topoisomerase 1 alpha OS=Arabidopsis thaliana OX=3702 GN=TOP1A PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.1e-28
Identity = 57/64 (89.06%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1   MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDP 60
           MERDM TKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF KSLL KF+WAMDV+P
Sbjct: 850 MERDMHTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFTKSLLEKFAWAMDVEP 909

Query: 61  DFRF 65
           ++RF
Sbjct: 910 EYRF 913

[Close]

BLAST of Sed0013923 vs. ExPASy Swiss-Prot
Match: P93119 (DNA topoisomerase 1 OS=Daucus carota OX=4039 GN=TOP1 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 6.7e-27
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 1   MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDP 60
           MERD +TKEDLKTVALGTSKINYLDPRITVAWCKRH+VPIEKIFNKSLLAKF+WAMDV  
Sbjct: 727 MERDKETKEDLKTVALGTSKINYLDPRITVAWCKRHDVPIEKIFNKSLLAKFAWAMDVVL 786

Query: 61  DFRF 65
            FRF
Sbjct: 787 IFRF 790

[Close]

BLAST of Sed0013923 vs. ExPASy Swiss-Prot
Match: Q54RC3 (DNA topoisomerase 1 OS=Dictyostelium discoideum OX=44689 GN=top1 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 6.3e-17
Identity = 40/57 (70.18%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 8   KEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDPDFRF 65
           K++LKTVALGTSKINYLDPRITVAWCK+++VP++KIF KSL  KF W+ DV  D+ F
Sbjct: 838 KDELKTVALGTSKINYLDPRITVAWCKKNKVPVDKIFTKSLRDKFPWS-DVGTDYIF 893

[Close]

BLAST of Sed0013923 vs. ExPASy Swiss-Prot
Match: P30189 (DNA topoisomerase 1 OS=Drosophila melanogaster OX=7227 GN=Top1 PE=1 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.4e-16
Identity = 38/65 (58.46%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 1   MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDV-D 60
           +E     +++ KT+ALGTSK+NYLDPRI+VAWCK+H+VPIEKIFNK+   KF WA+ + D
Sbjct: 908 LELQETDRDENKTIALGTSKLNYLDPRISVAWCKKHDVPIEKIFNKTQRTKFLWAVHMAD 967

Query: 61  PDFRF 65
            ++RF
Sbjct: 968 ENYRF 972

[Close]

BLAST of Sed0013923 vs. ExPASy TrEMBL
Match: A0A5D2CVC7 (DNA topoisomerase I OS=Gossypium darwinii OX=34276 GN=ES288_D05G448900v1 PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.7e-29
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1   MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDP 60
           MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF+WAMDVDP
Sbjct: 838 MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDP 897

Query: 61  DFRF 65
           DFRF
Sbjct: 898 DFRF 901

[Close]

BLAST of Sed0013923 vs. ExPASy TrEMBL
Match: A0A5D2GSE6 (DNA topoisomerase I OS=Gossypium darwinii OX=34276 GN=ES288_A04G014800v1 PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.7e-29
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1   MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDP 60
           MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF+WAMDVDP
Sbjct: 835 MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDP 894

Query: 61  DFRF 65
           DFRF
Sbjct: 895 DFRF 898

[Close]

BLAST of Sed0013923 vs. ExPASy TrEMBL
Match: A0A1U8M0M5 (DNA topoisomerase I OS=Gossypium hirsutum OX=3635 GN=LOC107932759 PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.7e-29
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1   MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDP 60
           MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF+WAMDVDP
Sbjct: 834 MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDP 893

Query: 61  DFRF 65
           DFRF
Sbjct: 894 DFRF 897

[Close]

BLAST of Sed0013923 vs. ExPASy TrEMBL
Match: A0A1U8J3R4 (DNA topoisomerase I OS=Gossypium hirsutum OX=3635 GN=LOC107903422 PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.7e-29
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1   MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDP 60
           MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF+WAMDVDP
Sbjct: 838 MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDP 897

Query: 61  DFRF 65
           DFRF
Sbjct: 898 DFRF 901

[Close]

BLAST of Sed0013923 vs. ExPASy TrEMBL
Match: A0A5J5RPE8 (DNA topoisomerase I OS=Gossypium barbadense OX=3634 GN=ES319_D05G417500v1 PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.7e-29
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1   MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDP 60
           MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKF+WAMDVDP
Sbjct: 838 MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDP 897

Query: 61  DFRF 65
           DFRF
Sbjct: 898 DFRF 901

[Close]

BLAST of Sed0013923 vs. TAIR 10
Match: AT5G55310.1 (DNA topoisomerase 1 beta )

HSP 1 Score: 131.7 bits (330), Expect = 2.1e-31
Identity = 59/64 (92.19%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1   MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDP 60
           MERDMQTKED+KTVALGTSKINY+DPRITVAWCKRH+VPIEKIFNKSLLAKF+WAMDVDP
Sbjct: 848 MERDMQTKEDMKTVALGTSKINYMDPRITVAWCKRHDVPIEKIFNKSLLAKFAWAMDVDP 907

Query: 61  DFRF 65
           +FRF
Sbjct: 908 EFRF 911

[Close]

BLAST of Sed0013923 vs. TAIR 10
Match: AT5G55300.1 (DNA topoisomerase I alpha )

HSP 1 Score: 125.6 bits (314), Expect = 1.5e-29
Identity = 57/64 (89.06%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1   MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDP 60
           MERDM TKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF KSLL KF+WAMDV+P
Sbjct: 850 MERDMHTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFTKSLLEKFAWAMDVEP 909

Query: 61  DFRF 65
           ++RF
Sbjct: 910 EYRF 913

[Close]

BLAST of Sed0013923 vs. TAIR 10
Match: AT5G55300.3 (DNA topoisomerase I alpha )

HSP 1 Score: 125.6 bits (314), Expect = 1.5e-29
Identity = 57/64 (89.06%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1   MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDP 60
           MERDM TKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF KSLL KF+WAMDV+P
Sbjct: 498 MERDMHTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFTKSLLEKFAWAMDVEP 557

Query: 61  DFRF 65
           ++RF
Sbjct: 558 EYRF 561

[Close]

BLAST of Sed0013923 vs. TAIR 10
Match: AT4G26701.1 (DNA binding;DNA topoisomerase type Is )

HSP 1 Score: 125.2 bits (313), Expect = 1.9e-29
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 1  MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDP 60
          MERDMQTKEDLKTVALGTSKINY+DPRITVAWCKRHE PIEKIFNKSLL KF+WAMDV+P
Sbjct: 6  MERDMQTKEDLKTVALGTSKINYMDPRITVAWCKRHEAPIEKIFNKSLLEKFAWAMDVEP 65

Query: 61 DFRF 65
           F F
Sbjct: 66 HFTF 69

[Close]

BLAST of Sed0013923 vs. TAIR 10
Match: AT5G55300.2 (DNA topoisomerase I alpha )

HSP 1 Score: 120.6 bits (301), Expect = 4.8e-28
Identity = 55/61 (90.16%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 1   MERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFSWAMDVDP 60
           MERDM TKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF KSLL KF+WAMDV+P
Sbjct: 850 MERDMHTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFTKSLLEKFAWAMDVEP 909

Query: 61  D 62
           +
Sbjct: 910 E 910

The following BLAST results are available for this feature:

BLAST of Sed0013923 vs. NCBI nr


Match Name	E-value	Identity	Description
MBA0716522.1	1.2e-28	98.44	hypothetical protein [Gossypium laxum]	[more]
KAB2059363.1	1.2e-28	98.44	hypothetical protein ES319_A11G297100v1 [Gossypium barbadense] >KAB2059364.1 hyp...	[more]
XP_016684952.1	1.2e-28	98.44	DNA topoisomerase 1 alpha [Gossypium hirsutum] >XP_016684953.1 DNA topoisomerase...	[more]
XP_039072279.1	1.2e-28	98.44	DNA topoisomerase 1 alpha-like isoform X2 [Hibiscus syriacus]	[more]
TYG47376.1	1.2e-28	98.44	hypothetical protein ES288_D11G333200v1 [Gossypium darwinii]	[more]

BLAST of Sed0013923 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJ79	2.9e-30	92.19	DNA topoisomerase 1 beta OS=Arabidopsis thaliana OX=3702 GN=TOP1B PE=1 SV=1	[more]
P30181	2.1e-28	89.06	DNA topoisomerase 1 alpha OS=Arabidopsis thaliana OX=3702 GN=TOP1A PE=1 SV=1	[more]
P93119	6.7e-27	89.06	DNA topoisomerase 1 OS=Daucus carota OX=4039 GN=TOP1 PE=2 SV=1	[more]
Q54RC3	6.3e-17	70.18	DNA topoisomerase 1 OS=Dictyostelium discoideum OX=44689 GN=top1 PE=3 SV=1	[more]
P30189	1.4e-16	58.46	DNA topoisomerase 1 OS=Drosophila melanogaster OX=7227 GN=Top1 PE=1 SV=1	[more]

BLAST of Sed0013923 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D2CVC7	5.7e-29	98.44	DNA topoisomerase I OS=Gossypium darwinii OX=34276 GN=ES288_D05G448900v1 PE=3 SV...	[more]
A0A5D2GSE6	5.7e-29	98.44	DNA topoisomerase I OS=Gossypium darwinii OX=34276 GN=ES288_A04G014800v1 PE=3 SV...	[more]
A0A1U8M0M5	5.7e-29	98.44	DNA topoisomerase I OS=Gossypium hirsutum OX=3635 GN=LOC107932759 PE=3 SV=1	[more]
A0A1U8J3R4	5.7e-29	98.44	DNA topoisomerase I OS=Gossypium hirsutum OX=3635 GN=LOC107903422 PE=3 SV=1	[more]
A0A5J5RPE8	5.7e-29	98.44	DNA topoisomerase I OS=Gossypium barbadense OX=3634 GN=ES319_D05G417500v1 PE=3 S...	[more]

BLAST of Sed0013923 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55310.1	2.1e-31	92.19	DNA topoisomerase 1 beta	[more]
AT5G55300.1	1.5e-29	89.06	DNA topoisomerase I alpha	[more]
AT5G55300.3	1.5e-29	89.06	DNA topoisomerase I alpha	[more]
AT4G26701.1	1.9e-29	89.06	DNA binding;DNA topoisomerase type Is	[more]
AT5G55300.2	4.8e-28	90.16	DNA topoisomerase I alpha	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014727	DNA topoisomerase I, catalytic core, alpha/beta subdomain	GENE3D	1.10.132.10		coord: 1..64 e-value: 1.1E-30 score: 108.7
IPR025834	Topoisomerase I C-terminal domain	PFAM	PF14370	Topo_C_assoc	coord: 1..64 e-value: 8.2E-36 score: 121.8
None	No IPR available	PANTHER	PTHR10290:SF16	DNA TOPOISOMERASE 1 ALPHA	coord: 1..64
None	No IPR available	PANTHER	PTHR10290	DNA TOPOISOMERASE I	coord: 1..64
IPR018521	DNA topoisomerase I, active site	PROSITE	PS00176	TOPOISOMERASE_I_EUK	coord: 10..28
IPR011010	DNA breaking-rejoining enzyme, catalytic core	SUPERFAMILY	56349	DNA breaking-rejoining enzymes	coord: 10..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013923.1	Sed0013923.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006338	chromatin remodeling
biological_process	GO:0007059	chromosome segregation
biological_process	GO:0006260	DNA replication
biological_process	GO:0006265	DNA topological change
cellular_component	GO:0005694	chromosome
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003917	DNA topoisomerase type I (single strand cut, ATP-independent) activity