Homology
BLAST of Sed0013587 vs. NCBI nr
Match:
XP_038894060.1 (polyadenylation and cleavage factor homolog 4 isoform X3 [Benincasa hispida])
HSP 1 Score: 1562.7 bits (4045), Expect = 0.0e+00
Identity = 803/1009 (79.58%), Postives = 862/1009 (85.43%), Query Frame = 0
Query: 1 MESEKLLISRGNPRTAPYSS------ATARAMPNELPQKPPPSIAQRFRALIKHRDDEFR 60
MESEKLLISRGNPR + Y S + R MPNELPQKPPPSIA RFRA +K RDDEFR
Sbjct: 5 MESEKLLISRGNPRNSAYPSDRQLPTTSGRTMPNELPQKPPPSIAHRFRAQLKQRDDEFR 64
Query: 61 VSGHD------AEDIVPLYELMLSELTFNSKPIITDLTVLADEQREHGKGIADLICSRIL 120
VSGHD AEDIV LY+LMLSELTFNSKPIITDLTVLADEQREHGKGIADLIC+RIL
Sbjct: 65 VSGHDVVPPPTAEDIVQLYDLMLSELTFNSKPIITDLTVLADEQREHGKGIADLICARIL 124
Query: 121 EVPVDQKLPSLYLLDSIVKNVGHEYISYFSPRLPEVFCEAYRRVHPNQHNAMRHLFGTWS 180
EVPV+QKLPSLYLLDSIVKNVG EYISYFS RLPEVFCEAYR+VHPN HNAMRHLFGTW+
Sbjct: 125 EVPVEQKLPSLYLLDSIVKNVGQEYISYFSSRLPEVFCEAYRQVHPNLHNAMRHLFGTWA 184
Query: 181 TVFPPSTLRKIETQLSQLTTQEPSVLTSSRASESPRPAHGIHVNPKYLRQLENSVGDKQH 240
TVFPPS +RKIE QLSQLT QE S LTSSRASESPRP HGIHVNPKYLRQLE+SV DKQ
Sbjct: 185 TVFPPSIIRKIEAQLSQLTAQESSSLTSSRASESPRPTHGIHVNPKYLRQLEHSVVDKQ- 244
Query: 241 IQDARGTPALKLHDKKLASGYEEYDYDHADVLEHGRGQPFNSMGSMGHDSFAIGTKKSNI 300
I DARG ALK+HDKKLASGYEEYDYDHA+VLEHG Q F+ + SM HDSFA+GT K+NI
Sbjct: 245 IHDARGVSALKVHDKKLASGYEEYDYDHAEVLEHGGAQAFH-LRSMAHDSFALGTNKANI 304
Query: 301 KIGKMSSSSRIGHNRPLQSVGD--EAVRASPSQNVYDYEGSRMMDRNEDTIIWRKNQYPN 360
K+ K S SSRIGHNRPLQS GD EAVRASPSQNVYDYEGSRM+DR EDT WR+ QYP+
Sbjct: 305 KLAKSSPSSRIGHNRPLQSAGDELEAVRASPSQNVYDYEGSRMIDRIEDTNKWRRKQYPD 364
Query: 361 DNLNGLESTSSYNIRNGHTLEGPRALIEAYGSDKGKGYLNDNSPQIEHFSINGLDNKATP 420
DNLNGLEST SYNIRNGH LEGPRALIEAYGSDKGKGYLNDN PQ EHFSING+DNK TP
Sbjct: 365 DNLNGLEST-SYNIRNGHALEGPRALIEAYGSDKGKGYLNDNPPQAEHFSINGIDNKVTP 424
Query: 421 VTWQNTEEEEFDWEDMSPTLADRGRSNDVLKPPVPPSRFRT----------------RSN 480
VTWQNTEEEEFDWEDMSPTLADRGR+ND+LKP VPPSRF T RSN
Sbjct: 425 VTWQNTEEEEFDWEDMSPTLADRGRNNDMLKPSVPPSRFVTRTGFERSNAMSIEPGMRSN 484
Query: 481 WSSQVQLPTTDSSIVIEDELPSTSDVWNMRNHLTQTSQNHMNSKGTGRNFQMPSMRRGTA 540
WSSQVQLPT DSS+VIED + ST D+WNM NH++QTSQN MN+KG GRNFQ P + RG A
Sbjct: 485 WSSQVQLPTIDSSMVIEDVVQSTPDIWNMHNHISQTSQNLMNNKGAGRNFQTPLLGRGIA 544
Query: 541 SSGGEKMSPFVDKLLTNDASHRPPTIVSRLGPSGLDSRMESQSVIHSMGPMHPVNVPNSC 600
SGGEKMSPF DKLLTNDA HRP TI SRLG SGLDS ME QS++ SMGP HP+N+PNSC
Sbjct: 545 LSGGEKMSPFADKLLTNDALHRPTTIASRLGSSGLDSSMELQSIVQSMGPRHPLNLPNSC 604
Query: 601 PPSRPPNFLLPRHYKSQFESLNGSNSFINPAKKSYLLEQQMNNLRNKDLSLPNKLPQVVS 660
PPSRPP F +PRH KS FESLNG NSFIN A +S+L EQQMNN+RNK+LSL KLPQV +
Sbjct: 605 PPSRPPIFPVPRHNKSPFESLNGGNSFINRANRSFLPEQQMNNMRNKELSLTTKLPQVGN 664
Query: 661 QHIGRIPLTQGNQTQAIPLKHQFLPSQEMQDNSCASAIPPMLPHLMAPSLSQGYTSQ--R 720
QH G IPLT+GNQ QAIPLK QFLPSQ+MQDN AS +PP LPHLMAPSLSQGY SQ R
Sbjct: 665 QHTGHIPLTRGNQLQAIPLKPQFLPSQDMQDNLSASVVPPALPHLMAPSLSQGYISQGHR 724
Query: 721 PAISECLSNSAPIGQWNLPVPNSSSNPLHLQGVPMLPLPPRPHPTSVQGTSISQNAGSLV 780
PAISECLS+SAPIGQWNLPV NS SNPLHLQG P+ PLPP PHPTS+ I Q AGSLV
Sbjct: 725 PAISECLSSSAPIGQWNLPVHNSPSNPLHLQGGPLPPLPPGPHPTSIPTIPIPQKAGSLV 784
Query: 781 PGQQPGVGLSGLISSLMAQGLISLNNQASAQDSIGLEFNPDVLKVRHESAITALYANLPR 840
PGQ+PG SGLISSLMAQGLISLNNQ S QDS+GLEFNPDVLKVRHESAITALYA+LPR
Sbjct: 785 PGQRPGTEFSGLISSLMAQGLISLNNQPSVQDSVGLEFNPDVLKVRHESAITALYADLPR 844
Query: 841 QCMTCGLRFKSQEEHSNHMDWHVTRNRMSKSRKQKPSRKWFVSTSMWLSGAEALGTEAVP 900
QCMTCGLRFK+QEEHSNHMDWHVT+NRMSKSRKQKPSRKWFVS SMWLSGAEALGTEAVP
Sbjct: 845 QCMTCGLRFKTQEEHSNHMDWHVTKNRMSKSRKQKPSRKWFVSISMWLSGAEALGTEAVP 904
Query: 901 GFLPAEVIVEEKNDEELAVLADEDQKTCALCGEPFDDFYSDEAEEWMYRGAVYLNASDGQ 960
GFLP EVIVE+K+DEELAV AD+DQKTCALCGEPF+DFYSDE EEWMYRGAVY+NA DGQ
Sbjct: 905 GFLPPEVIVEKKDDEELAVPADDDQKTCALCGEPFEDFYSDETEEWMYRGAVYMNAPDGQ 964
Query: 961 TTGMDVSQLGPIVHAKCRTESNVAPSESFDQDEQAGDSEESNRRKRLRS 978
T GMD SQLGPIVHAKCRTE+NV SESF+Q+EQ G SEE NRRKRLRS
Sbjct: 965 TAGMDRSQLGPIVHAKCRTETNVVTSESFEQEEQGGVSEEGNRRKRLRS 1010
BLAST of Sed0013587 vs. NCBI nr
Match:
XP_008462960.1 (PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X1 [Cucumis melo] >XP_008462968.1 PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X1 [Cucumis melo])
HSP 1 Score: 1557.7 bits (4032), Expect = 0.0e+00
Identity = 796/1013 (78.58%), Postives = 868/1013 (85.69%), Query Frame = 0
Query: 1 MESEKLLISRGNPRTAPYSS------ATARAMPNELPQKPPPSIAQRFRALIKHRDDEFR 60
MESEKLLISRGNPR + Y S + R MPNELPQKPPPSIA RFRA +K RDDEFR
Sbjct: 5 MESEKLLISRGNPRNSAYPSDRPIPTTSGRTMPNELPQKPPPSIAHRFRAQLKQRDDEFR 64
Query: 61 VSGHD------AEDIVPLYELMLSELTFNSKPIITDLTVLADEQREHGKGIADLICSRIL 120
VSGHD AEDIV LY+LMLSELTFNSKPIITDLTVLADEQREHGKGIADLIC+RIL
Sbjct: 65 VSGHDVVPPPTAEDIVQLYDLMLSELTFNSKPIITDLTVLADEQREHGKGIADLICARIL 124
Query: 121 EVPVDQKLPSLYLLDSIVKNVGHEYISYFSPRLPEVFCEAYRRVHPNQHNAMRHLFGTWS 180
EVPVDQKLPSLYLLDSIVKNVGHEYISYFS RLPEVFCEAYR+VHPN HNAMRHLFGTW+
Sbjct: 125 EVPVDQKLPSLYLLDSIVKNVGHEYISYFSSRLPEVFCEAYRQVHPNLHNAMRHLFGTWA 184
Query: 181 TVFPPSTLRKIETQLSQLTTQEPSVLTSSRASESPRPAHGIHVNPKYLRQLENSVGDK-- 240
TVFPPS +RKIE QLSQLT QE S LTSSRASESPRP HGIHVNPKYLRQLE+SV DK
Sbjct: 185 TVFPPSIIRKIEAQLSQLTAQESSGLTSSRASESPRPTHGIHVNPKYLRQLEHSVVDKLL 244
Query: 241 --QHIQDARGTPALKLHDKKLASGYEEYDYDHADVLEHGRGQPFNSMGSMGHDSFAIGTK 300
QH QD+RGT A+K+HDKKLASGYEEYDYDHAD LEHG Q F+SMGSMGHDSF++GT
Sbjct: 245 ALQHTQDSRGTSAIKVHDKKLASGYEEYDYDHADALEHGGAQEFHSMGSMGHDSFSLGTN 304
Query: 301 KSNIKIGKMSSSSRIGHNRPLQSVGD--EAVRASPSQNVYDYEGSRMMDRNEDTIIWRKN 360
K+N+K+ K S SSRIGH+RPLQS+GD E+VRASPSQNVYDYEGS+++DRNEDT WR+
Sbjct: 305 KANVKLAKSSLSSRIGHHRPLQSLGDELESVRASPSQNVYDYEGSKILDRNEDTNKWRRK 364
Query: 361 QYPNDNLNGLESTSSYNIRNGHTLEGPRALIEAYGSDKGKGYLNDNSPQIEHFSINGLDN 420
QYP+DN+NGLE+TSSYNIRNGH LEGPRALIEAYGSDKGKGYLNDN PQ EHFSI+G+DN
Sbjct: 365 QYPDDNMNGLENTSSYNIRNGHALEGPRALIEAYGSDKGKGYLNDNPPQAEHFSISGIDN 424
Query: 421 KATPVTWQNTEEEEFDWEDMSPTLADRGRSNDVLKPPVPPSRFRT--------------- 480
KATPVTWQNTEEEEFDWEDMSPTLADRGR+ND+LKP VPPSRFRT
Sbjct: 425 KATPVTWQNTEEEEFDWEDMSPTLADRGRNNDMLKPTVPPSRFRTRSGFERSNAMPIEPG 484
Query: 481 -RSNWSSQVQLPTTDSSIVIEDELPSTSDVWNMRNHLTQTSQNHMNSKGTGRNFQMPSMR 540
RSNWSSQVQLP DSSIVIED + ST D+W M NH++QTSQN MN+KG GRNFQMP +
Sbjct: 485 MRSNWSSQVQLPGIDSSIVIEDVVHSTPDIWKMHNHISQTSQNLMNNKGPGRNFQMPMLG 544
Query: 541 RGTASSGGEKMSPFVDKLLTNDASHRPPTIVSRLGPSGLDSRMESQSVIHSMGPMHPVNV 600
RG SSGGEKMSP+ DKLLTNDA HRP I SRLG SGLDS MESQS++ SMGP HP+N+
Sbjct: 545 RGITSSGGEKMSPYGDKLLTNDALHRPTNIASRLGSSGLDSNMESQSIVQSMGPRHPLNL 604
Query: 601 PNSCPPSRPPNFLLPRHYKSQFESLNGSNSFINPAKKSYLLEQQMNNLRNKDLSLPNKLP 660
NSCPPSRPP F +PRH SQFESLNGSNSF+N A +++L EQQMNNLRNK+LSL K P
Sbjct: 605 SNSCPPSRPPVFPVPRHNTSQFESLNGSNSFMNSANRTFLPEQQMNNLRNKELSLTTKSP 664
Query: 661 QVVSQHIGRIPLTQGNQTQAIPLKHQFLPSQEMQDNSCASAIPPMLPHLMAPSLSQGYTS 720
QV +QH G IPLT+GNQ Q++PLK QFLPSQ+MQDN SA+PP+LPHL+APSLSQGY S
Sbjct: 665 QVGNQHTGHIPLTRGNQLQSMPLKPQFLPSQDMQDNFSGSAVPPVLPHLIAPSLSQGYIS 724
Query: 721 Q--RPAISECLSNSAPIGQWNLPVPNSSSNPLHLQGVPMLPLPPRPHPTSVQGTSISQNA 780
Q RPA SE LS+SAPIGQWNL V NSSSNPLHLQG P+ PLPP PHPTS ISQ
Sbjct: 725 QGHRPANSEGLSSSAPIGQWNLSVHNSSSNPLHLQGGPLPPLPPGPHPTSGPTIPISQK- 784
Query: 781 GSLVPGQQPGVGLSGLISSLMAQGLISLNNQASAQDSIGLEFNPDVLKVRHESAITALYA 840
VPGQQPG +SGLISSLMA+GLISLNNQAS QDS+GLEFNPDVLKVRHESAITALYA
Sbjct: 785 ---VPGQQPGTAISGLISSLMARGLISLNNQASVQDSVGLEFNPDVLKVRHESAITALYA 844
Query: 841 NLPRQCMTCGLRFKSQEEHSNHMDWHVTRNRMSKSRKQKPSRKWFVSTSMWLSGAEALGT 900
+LPRQCMTCGLRFK+QEEHSNHMDWHVT+NRMSKSRKQKPSRKWFVS SMWLSGAEALGT
Sbjct: 845 DLPRQCMTCGLRFKTQEEHSNHMDWHVTKNRMSKSRKQKPSRKWFVSISMWLSGAEALGT 904
Query: 901 EAVPGFLPAEVIVEEKNDEELAVLADEDQKTCALCGEPFDDFYSDEAEEWMYRGAVYLNA 960
EAVPGFLPAEV+VE+K+DEELAV ADEDQKTCALCGEPF+DFYSDE EEWMYRGAVY+NA
Sbjct: 905 EAVPGFLPAEVVVEKKDDEELAVPADEDQKTCALCGEPFEDFYSDETEEWMYRGAVYMNA 964
Query: 961 SDGQTTGMDVSQLGPIVHAKCRTESNVAPSESFDQDEQAGDSEESNRRKRLRS 978
DGQT GMD SQLGPIVHAKCRTE+NV PSESFDQDE G SE+ NRRKRLRS
Sbjct: 965 PDGQTAGMDRSQLGPIVHAKCRTETNVVPSESFDQDE-GGVSEDGNRRKRLRS 1012
BLAST of Sed0013587 vs. NCBI nr
Match:
XP_008462986.1 (PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X2 [Cucumis melo])
HSP 1 Score: 1557.0 bits (4030), Expect = 0.0e+00
Identity = 795/1009 (78.79%), Postives = 867/1009 (85.93%), Query Frame = 0
Query: 1 MESEKLLISRGNPRTAPYSS------ATARAMPNELPQKPPPSIAQRFRALIKHRDDEFR 60
MESEKLLISRGNPR + Y S + R MPNELPQKPPPSIA RFRA +K RDDEFR
Sbjct: 5 MESEKLLISRGNPRNSAYPSDRPIPTTSGRTMPNELPQKPPPSIAHRFRAQLKQRDDEFR 64
Query: 61 VSGHD------AEDIVPLYELMLSELTFNSKPIITDLTVLADEQREHGKGIADLICSRIL 120
VSGHD AEDIV LY+LMLSELTFNSKPIITDLTVLADEQREHGKGIADLIC+RIL
Sbjct: 65 VSGHDVVPPPTAEDIVQLYDLMLSELTFNSKPIITDLTVLADEQREHGKGIADLICARIL 124
Query: 121 EVPVDQKLPSLYLLDSIVKNVGHEYISYFSPRLPEVFCEAYRRVHPNQHNAMRHLFGTWS 180
EVPVDQKLPSLYLLDSIVKNVGHEYISYFS RLPEVFCEAYR+VHPN HNAMRHLFGTW+
Sbjct: 125 EVPVDQKLPSLYLLDSIVKNVGHEYISYFSSRLPEVFCEAYRQVHPNLHNAMRHLFGTWA 184
Query: 181 TVFPPSTLRKIETQLSQLTTQEPSVLTSSRASESPRPAHGIHVNPKYLRQLENSVGDKQH 240
TVFPPS +RKIE QLSQLT QE S LTSSRASESPRP HGIHVNPKYLRQLE+SV DK H
Sbjct: 185 TVFPPSIIRKIEAQLSQLTAQESSGLTSSRASESPRPTHGIHVNPKYLRQLEHSVVDK-H 244
Query: 241 IQDARGTPALKLHDKKLASGYEEYDYDHADVLEHGRGQPFNSMGSMGHDSFAIGTKKSNI 300
QD+RGT A+K+HDKKLASGYEEYDYDHAD LEHG Q F+SMGSMGHDSF++GT K+N+
Sbjct: 245 TQDSRGTSAIKVHDKKLASGYEEYDYDHADALEHGGAQEFHSMGSMGHDSFSLGTNKANV 304
Query: 301 KIGKMSSSSRIGHNRPLQSVGD--EAVRASPSQNVYDYEGSRMMDRNEDTIIWRKNQYPN 360
K+ K S SSRIGH+RPLQS+GD E+VRASPSQNVYDYEGS+++DRNEDT WR+ QYP+
Sbjct: 305 KLAKSSLSSRIGHHRPLQSLGDELESVRASPSQNVYDYEGSKILDRNEDTNKWRRKQYPD 364
Query: 361 DNLNGLESTSSYNIRNGHTLEGPRALIEAYGSDKGKGYLNDNSPQIEHFSINGLDNKATP 420
DN+NGLE+TSSYNIRNGH LEGPRALIEAYGSDKGKGYLNDN PQ EHFSI+G+DNKATP
Sbjct: 365 DNMNGLENTSSYNIRNGHALEGPRALIEAYGSDKGKGYLNDNPPQAEHFSISGIDNKATP 424
Query: 421 VTWQNTEEEEFDWEDMSPTLADRGRSNDVLKPPVPPSRFRT----------------RSN 480
VTWQNTEEEEFDWEDMSPTLADRGR+ND+LKP VPPSRFRT RSN
Sbjct: 425 VTWQNTEEEEFDWEDMSPTLADRGRNNDMLKPTVPPSRFRTRSGFERSNAMPIEPGMRSN 484
Query: 481 WSSQVQLPTTDSSIVIEDELPSTSDVWNMRNHLTQTSQNHMNSKGTGRNFQMPSMRRGTA 540
WSSQVQLP DSSIVIED + ST D+W M NH++QTSQN MN+KG GRNFQMP + RG
Sbjct: 485 WSSQVQLPGIDSSIVIEDVVHSTPDIWKMHNHISQTSQNLMNNKGPGRNFQMPMLGRGIT 544
Query: 541 SSGGEKMSPFVDKLLTNDASHRPPTIVSRLGPSGLDSRMESQSVIHSMGPMHPVNVPNSC 600
SSGGEKMSP+ DKLLTNDA HRP I SRLG SGLDS MESQS++ SMGP HP+N+ NSC
Sbjct: 545 SSGGEKMSPYGDKLLTNDALHRPTNIASRLGSSGLDSNMESQSIVQSMGPRHPLNLSNSC 604
Query: 601 PPSRPPNFLLPRHYKSQFESLNGSNSFINPAKKSYLLEQQMNNLRNKDLSLPNKLPQVVS 660
PPSRPP F +PRH SQFESLNGSNSF+N A +++L EQQMNNLRNK+LSL K PQV +
Sbjct: 605 PPSRPPVFPVPRHNTSQFESLNGSNSFMNSANRTFLPEQQMNNLRNKELSLTTKSPQVGN 664
Query: 661 QHIGRIPLTQGNQTQAIPLKHQFLPSQEMQDNSCASAIPPMLPHLMAPSLSQGYTSQ--R 720
QH G IPLT+GNQ Q++PLK QFLPSQ+MQDN SA+PP+LPHL+APSLSQGY SQ R
Sbjct: 665 QHTGHIPLTRGNQLQSMPLKPQFLPSQDMQDNFSGSAVPPVLPHLIAPSLSQGYISQGHR 724
Query: 721 PAISECLSNSAPIGQWNLPVPNSSSNPLHLQGVPMLPLPPRPHPTSVQGTSISQNAGSLV 780
PA SE LS+SAPIGQWNL V NSSSNPLHLQG P+ PLPP PHPTS ISQ V
Sbjct: 725 PANSEGLSSSAPIGQWNLSVHNSSSNPLHLQGGPLPPLPPGPHPTSGPTIPISQK----V 784
Query: 781 PGQQPGVGLSGLISSLMAQGLISLNNQASAQDSIGLEFNPDVLKVRHESAITALYANLPR 840
PGQQPG +SGLISSLMA+GLISLNNQAS QDS+GLEFNPDVLKVRHESAITALYA+LPR
Sbjct: 785 PGQQPGTAISGLISSLMARGLISLNNQASVQDSVGLEFNPDVLKVRHESAITALYADLPR 844
Query: 841 QCMTCGLRFKSQEEHSNHMDWHVTRNRMSKSRKQKPSRKWFVSTSMWLSGAEALGTEAVP 900
QCMTCGLRFK+QEEHSNHMDWHVT+NRMSKSRKQKPSRKWFVS SMWLSGAEALGTEAVP
Sbjct: 845 QCMTCGLRFKTQEEHSNHMDWHVTKNRMSKSRKQKPSRKWFVSISMWLSGAEALGTEAVP 904
Query: 901 GFLPAEVIVEEKNDEELAVLADEDQKTCALCGEPFDDFYSDEAEEWMYRGAVYLNASDGQ 960
GFLPAEV+VE+K+DEELAV ADEDQKTCALCGEPF+DFYSDE EEWMYRGAVY+NA DGQ
Sbjct: 905 GFLPAEVVVEKKDDEELAVPADEDQKTCALCGEPFEDFYSDETEEWMYRGAVYMNAPDGQ 964
Query: 961 TTGMDVSQLGPIVHAKCRTESNVAPSESFDQDEQAGDSEESNRRKRLRS 978
T GMD SQLGPIVHAKCRTE+NV PSESFDQDE G SE+ NRRKRLRS
Sbjct: 965 TAGMDRSQLGPIVHAKCRTETNVVPSESFDQDE-GGVSEDGNRRKRLRS 1007
BLAST of Sed0013587 vs. NCBI nr
Match:
XP_011653866.1 (polyadenylation and cleavage factor homolog 4 [Cucumis sativus] >XP_031739723.1 polyadenylation and cleavage factor homolog 4 [Cucumis sativus] >KGN64812.1 hypothetical protein Csa_013375 [Cucumis sativus])
HSP 1 Score: 1551.6 bits (4016), Expect = 0.0e+00
Identity = 799/1009 (79.19%), Postives = 863/1009 (85.53%), Query Frame = 0
Query: 1 MESEKLLISRGNPRTAPYSS------ATARAMPNELPQKPPPSIAQRFRALIKHRDDEFR 60
MESEKLLISRGNPR + Y S + R MPNELPQKP PSIA RFRA +K RDDEFR
Sbjct: 5 MESEKLLISRGNPRNSVYPSDRPIPTTSGRTMPNELPQKPAPSIAHRFRAQLKQRDDEFR 64
Query: 61 VSGHD------AEDIVPLYELMLSELTFNSKPIITDLTVLADEQREHGKGIADLICSRIL 120
VSGHD AEDIV LY+LMLSELTFNSKPIITDLTVLADEQREHGKGIADLIC+RIL
Sbjct: 65 VSGHDVVPLPTAEDIVQLYDLMLSELTFNSKPIITDLTVLADEQREHGKGIADLICARIL 124
Query: 121 EVPVDQKLPSLYLLDSIVKNVGHEYISYFSPRLPEVFCEAYRRVHPNQHNAMRHLFGTWS 180
EVPVDQKLPSLYLLDSIVKNVGHEYISYF+ RLPEVFCEAYR+VHPN HNAMRHLFGTW+
Sbjct: 125 EVPVDQKLPSLYLLDSIVKNVGHEYISYFASRLPEVFCEAYRQVHPNLHNAMRHLFGTWA 184
Query: 181 TVFPPSTLRKIETQLSQLTTQEPSVLTSSRASESPRPAHGIHVNPKYLRQLENSVGDKQH 240
TVFPPS +RKIE QLSQLT QE S LTSSRASESPRP HGIHVNPKYLRQLE+SV DK H
Sbjct: 185 TVFPPSIIRKIEAQLSQLTAQESSGLTSSRASESPRPTHGIHVNPKYLRQLEHSVVDK-H 244
Query: 241 IQDARGTPALKLHDKKLASGYEEYDYDHADVLEHGRGQPFNSMGSMGHDSFAIGTKKSNI 300
QD+RGT A+K+HDKKLASGYEEYDYDHAD LEHG Q F+SMGSMGHDSF++GT K+NI
Sbjct: 245 SQDSRGTSAIKVHDKKLASGYEEYDYDHADALEHGGPQGFHSMGSMGHDSFSLGTNKANI 304
Query: 301 KIGKMSSSSRIGHNRPLQSVGD--EAVRASPSQNVYDYEGSRMMDRNEDTIIWRKNQYPN 360
K+ K S SSRIG +RPLQSVGD E VRASPSQNVYDYEGS+M+DRNEDT WR+ QYP+
Sbjct: 305 KLAKSSLSSRIGPHRPLQSVGDEHETVRASPSQNVYDYEGSKMIDRNEDTNKWRRKQYPD 364
Query: 361 DNLNGLESTSSYNIRNGHTLEGPRALIEAYGSDKGKGYLNDNSPQIEHFSINGLDNKATP 420
DNLNGLESTSSYNIRNGH LEGPRALIEAYGSDKGKGYLNDN PQ EHFSIN +DNKATP
Sbjct: 365 DNLNGLESTSSYNIRNGHALEGPRALIEAYGSDKGKGYLNDNPPQAEHFSINVIDNKATP 424
Query: 421 VTWQNTEEEEFDWEDMSPTLADRGRSNDVLKPPVPPSRFRT----------------RSN 480
VTWQNTEEEEFDWEDMSPTLADRGR+ND+LKPPVPPSRFRT RSN
Sbjct: 425 VTWQNTEEEEFDWEDMSPTLADRGRNNDMLKPPVPPSRFRTRSGFERSNAMPIEPGMRSN 484
Query: 481 WSSQVQLPTTDSSIVIEDELPSTSDVWNMRNHLTQTSQNHMNSKGTGRNFQMPSMRRGTA 540
WSS V+LP DSSIVIED + ST D WNM NH++QTSQN MN+KG GRNFQMP + RG
Sbjct: 485 WSSPVRLPGIDSSIVIEDVVHSTPDNWNMHNHISQTSQNLMNNKGQGRNFQMPMLGRGIT 544
Query: 541 SSGGEKMSPFVDKLLTNDASHRPPTIVSRLGPSGLDSRMESQSVIHSMGPMHPVNVPNSC 600
SS GEKMSP+ DKLLTNDA HRP I SRLG SGLDS MESQS++ SMGP HP+N+ NSC
Sbjct: 545 SSVGEKMSPYGDKLLTNDALHRPTNIASRLGSSGLDSSMESQSIVQSMGPRHPLNLSNSC 604
Query: 601 PPSRPPNFLLPRHYKSQFESLNGSNSFINPAKKSYLLEQQMNNLRNKDLSLPNKLPQVVS 660
PPSRPP F +PRH SQFESLNGSNSF+N A +++L EQQMNNLRNK+LSL K PQV +
Sbjct: 605 PPSRPPIFPVPRHNASQFESLNGSNSFMNCANRTFLPEQQMNNLRNKELSLTTKSPQVGN 664
Query: 661 QHIGRIPLTQGNQTQAIPLKHQFLPSQEMQDNSCASAIPPMLPHLMAPSLSQGYTSQ--R 720
QH G IPLT+GNQ Q +PLK QFLPSQ+MQDN SA+PP+LPHLMAPSLSQGY SQ R
Sbjct: 665 QHTGHIPLTRGNQLQGMPLKPQFLPSQDMQDNFSGSAVPPVLPHLMAPSLSQGYISQGHR 724
Query: 721 PAISECLSNSAPIGQWNLPVPNSSSNPLHLQGVPMLPLPPRPHPTSVQGTSISQNAGSLV 780
PAISE LS+SAPIGQWNL V NSSSNPLHLQG P+ PLPP PHPTS ISQ V
Sbjct: 725 PAISEGLSSSAPIGQWNLSVHNSSSNPLHLQGGPLPPLPPGPHPTSGPTIPISQK----V 784
Query: 781 PGQQPGVGLSGLISSLMAQGLISLNNQASAQDSIGLEFNPDVLKVRHESAITALYANLPR 840
PGQQPG +SGLISSLMA+GLISLNNQAS QDS+GLEFNPDVLKVRHESAITALYA+LPR
Sbjct: 785 PGQQPGTAISGLISSLMARGLISLNNQASVQDSVGLEFNPDVLKVRHESAITALYADLPR 844
Query: 841 QCMTCGLRFKSQEEHSNHMDWHVTRNRMSKSRKQKPSRKWFVSTSMWLSGAEALGTEAVP 900
QCMTCGLRFK+QEEHSNHMDWHVT+NRMSKSRKQKPSRKWFVS SMWLSGAEALGTEAVP
Sbjct: 845 QCMTCGLRFKTQEEHSNHMDWHVTKNRMSKSRKQKPSRKWFVSISMWLSGAEALGTEAVP 904
Query: 901 GFLPAEVIVEEKNDEELAVLADEDQKTCALCGEPFDDFYSDEAEEWMYRGAVYLNASDGQ 960
GFLPAEV+VE+K+DEELAV ADEDQKTCALCGEPF+DFYSDE EEWMYRGAVY+NA DGQ
Sbjct: 905 GFLPAEVVVEKKDDEELAVPADEDQKTCALCGEPFEDFYSDETEEWMYRGAVYMNAPDGQ 964
Query: 961 TTGMDVSQLGPIVHAKCRTESNVAPSESFDQDEQAGDSEESNRRKRLRS 978
T GMD+SQLGPIVHAKCRTE+NV PSESFDQDE G SEE NRRKRLRS
Sbjct: 965 TAGMDISQLGPIVHAKCRTETNVVPSESFDQDE-GGVSEEGNRRKRLRS 1007
BLAST of Sed0013587 vs. NCBI nr
Match:
XP_038894058.1 (polyadenylation and cleavage factor homolog 4 isoform X1 [Benincasa hispida])
HSP 1 Score: 1544.6 bits (3998), Expect = 0.0e+00
Identity = 791/994 (79.58%), Postives = 850/994 (85.51%), Query Frame = 0
Query: 1 MESEKLLISRGNPRTAPYSS------ATARAMPNELPQKPPPSIAQRFRALIKHRDDEFR 60
MESEKLLISRGNPR + Y S + R MPNELPQKPPPSIA RFRA +K RDDEFR
Sbjct: 5 MESEKLLISRGNPRNSAYPSDRQLPTTSGRTMPNELPQKPPPSIAHRFRAQLKQRDDEFR 64
Query: 61 VSGHD------AEDIVPLYELMLSELTFNSKPIITDLTVLADEQREHGKGIADLICSRIL 120
VSGHD AEDIV LY+LMLSELTFNSKPIITDLTVLADEQREHGKGIADLIC+RIL
Sbjct: 65 VSGHDVVPPPTAEDIVQLYDLMLSELTFNSKPIITDLTVLADEQREHGKGIADLICARIL 124
Query: 121 EVPVDQKLPSLYLLDSIVKNVGHEYISYFSPRLPEVFCEAYRRVHPNQHNAMRHLFGTWS 180
EVPV+QKLPSLYLLDSIVKNVG EYISYFS RLPEVFCEAYR+VHPN HNAMRHLFGTW+
Sbjct: 125 EVPVEQKLPSLYLLDSIVKNVGQEYISYFSSRLPEVFCEAYRQVHPNLHNAMRHLFGTWA 184
Query: 181 TVFPPSTLRKIETQLSQLTTQEPSVLTSSRASESPRPAHGIHVNPKYLRQLENSVGDKQH 240
TVFPPS +RKIE QLSQLT QE S LTSSRASESPRP HGIHVNPKYLRQLE+SV DKQ
Sbjct: 185 TVFPPSIIRKIEAQLSQLTAQESSSLTSSRASESPRPTHGIHVNPKYLRQLEHSVVDKQ- 244
Query: 241 IQDARGTPALKLHDKKLASGYEEYDYDHADVLEHGRGQPFNSMGSMGHDSFAIGTKKSNI 300
I DARG ALK+HDKKLASGYEEYDYDHA+VLEHG Q F+ + SM HDSFA+GT K+NI
Sbjct: 245 IHDARGVSALKVHDKKLASGYEEYDYDHAEVLEHGGAQAFH-LRSMAHDSFALGTNKANI 304
Query: 301 KIGKMSSSSRIGHNRPLQSVGD--EAVRASPSQNVYDYEGSRMMDRNEDTIIWRKNQYPN 360
K+ K S SSRIGHNRPLQS GD EAVRASPSQNVYDYEGSRM+DR EDT WR+ QYP+
Sbjct: 305 KLAKSSPSSRIGHNRPLQSAGDELEAVRASPSQNVYDYEGSRMIDRIEDTNKWRRKQYPD 364
Query: 361 DNLNGLESTSSYNIRNGHTLEGPRALIEAYGSDKGKGYLNDNSPQIEHFSINGLDNKATP 420
DNLNGLEST SYNIRNGH LEGPRALIEAYGSDKGKGYLNDN PQ EHFSING+DNK TP
Sbjct: 365 DNLNGLEST-SYNIRNGHALEGPRALIEAYGSDKGKGYLNDNPPQAEHFSINGIDNKVTP 424
Query: 421 VTWQNTEEEEFDWEDMSPTLADRGRSNDVLKPPVPPSRFRT----------------RSN 480
VTWQNTEEEEFDWEDMSPTLADRGR+ND+LKP VPPSRF T RSN
Sbjct: 425 VTWQNTEEEEFDWEDMSPTLADRGRNNDMLKPSVPPSRFVTRTGFERSNAMSIEPGMRSN 484
Query: 481 WSSQVQLPTTDSSIVIEDELPSTSDVWNMRNHLTQTSQNHMNSKGTGRNFQMPSMRRGTA 540
WSSQVQLPT DSS+VIED + ST D+WNM NH++QTSQN MN+KG GRNFQ P + RG A
Sbjct: 485 WSSQVQLPTIDSSMVIEDVVQSTPDIWNMHNHISQTSQNLMNNKGAGRNFQTPLLGRGIA 544
Query: 541 SSGGEKMSPFVDKLLTNDASHRPPTIVSRLGPSGLDSRMESQSVIHSMGPMHPVNVPNSC 600
SGGEKMSPF DKLLTNDA HRP TI SRLG SGLDS ME QS++ SMGP HP+N+PNSC
Sbjct: 545 LSGGEKMSPFADKLLTNDALHRPTTIASRLGSSGLDSSMELQSIVQSMGPRHPLNLPNSC 604
Query: 601 PPSRPPNFLLPRHYKSQFESLNGSNSFINPAKKSYLLEQQMNNLRNKDLSLPNKLPQVVS 660
PPSRPP F +PRH KS FESLNG NSFIN A +S+L EQQMNN+RNK+LSL KLPQV +
Sbjct: 605 PPSRPPIFPVPRHNKSPFESLNGGNSFINRANRSFLPEQQMNNMRNKELSLTTKLPQVGN 664
Query: 661 QHIGRIPLTQGNQTQAIPLKHQFLPSQEMQDNSCASAIPPMLPHLMAPSLSQGYTSQ--R 720
QH G IPLT+GNQ QAIPLK QFLPSQ+MQDN AS +PP LPHLMAPSLSQGY SQ R
Sbjct: 665 QHTGHIPLTRGNQLQAIPLKPQFLPSQDMQDNLSASVVPPALPHLMAPSLSQGYISQGHR 724
Query: 721 PAISECLSNSAPIGQWNLPVPNSSSNPLHLQGVPMLPLPPRPHPTSVQGTSISQNAGSLV 780
PAISECLS+SAPIGQWNLPV NS SNPLHLQG P+ PLPP PHPTS+ I Q AGSLV
Sbjct: 725 PAISECLSSSAPIGQWNLPVHNSPSNPLHLQGGPLPPLPPGPHPTSIPTIPIPQKAGSLV 784
Query: 781 PGQQPGVGLSGLISSLMAQGLISLNNQASAQDSIGLEFNPDVLKVRHESAITALYANLPR 840
PGQ+PG SGLISSLMAQGLISLNNQ S QDS+GLEFNPDVLKVRHESAITALYA+LPR
Sbjct: 785 PGQRPGTEFSGLISSLMAQGLISLNNQPSVQDSVGLEFNPDVLKVRHESAITALYADLPR 844
Query: 841 QCMTCGLRFKSQEEHSNHMDWHVTRNRMSKSRKQKPSRKWFVSTSMWLSGAEALGTEAVP 900
QCMTCGLRFK+QEEHSNHMDWHVT+NRMSKSRKQKPSRKWFVS SMWLSGAEALGTEAVP
Sbjct: 845 QCMTCGLRFKTQEEHSNHMDWHVTKNRMSKSRKQKPSRKWFVSISMWLSGAEALGTEAVP 904
Query: 901 GFLPAEVIVEEKNDEELAVLADEDQKTCALCGEPFDDFYSDEAEEWMYRGAVYLNASDGQ 960
GFLP EVIVE+K+DEELAV AD+DQKTCALCGEPF+DFYSDE EEWMYRGAVY+NA DGQ
Sbjct: 905 GFLPPEVIVEKKDDEELAVPADDDQKTCALCGEPFEDFYSDETEEWMYRGAVYMNAPDGQ 964
Query: 961 TTGMDVSQLGPIVHAKCRTESNVAPSESFDQDEQ 963
T GMD SQLGPIVHAKCRTE+NV SESF+Q+EQ
Sbjct: 965 TAGMDRSQLGPIVHAKCRTETNVVTSESFEQEEQ 995
BLAST of Sed0013587 vs. ExPASy Swiss-Prot
Match:
Q0WPF2 (Polyadenylation and cleavage factor homolog 4 OS=Arabidopsis thaliana OX=3702 GN=PCFS4 PE=1 SV=1)
HSP 1 Score: 609.4 bits (1570), Expect = 7.2e-173
Identity = 425/989 (42.97%), Postives = 546/989 (55.21%), Query Frame = 0
Query: 1 MESEKLLISRGNPRTAPYSSATARAMPNELPQK--PPPSIAQRFRALIKHRDDEF----R 60
M+SEK+L NPR +S + + M ELPQK PPPS+ RF+AL+ R+DEF
Sbjct: 1 MDSEKIL----NPRLVSINSTSRKGMSVELPQKPPPPPSLLDRFKALLNQREDEFGGGEE 60
Query: 61 VSGHDAEDIVPLYELMLSELTFNSKPIITDLTVLADEQREHGKGIADLICSRILEVPVDQ 120
V ++IV LYE++L ELTFNSKPIITDLT++A EQREHG+GIA+ IC+RILE PV+Q
Sbjct: 61 VLPPSMDEIVQLYEVVLGELTFNSKPIITDLTIIAGEQREHGEGIANAICTRILEAPVEQ 120
Query: 121 KLPSLYLLDSIVKNVGHEYISYFSPRLPEVFCEAYRRVHPNQHNAMRHLFGTWSTVFPPS 180
KLPSLYLLDSIVKN+G +Y YFS RLPEVFC AYR+ HP+ H +MRHLFGTWS+VFPP
Sbjct: 121 KLPSLYLLDSIVKNIGRDYGRYFSSRLPEVFCLAYRQAHPSLHPSMRHLFGTWSSVFPPP 180
Query: 181 TLRKIETQLSQLTTQEPSVLTSSRASESPRPAHGIHVNPKYLRQLENSVGDKQHIQDARG 240
LRKI+ QL + S S ASE +P GIHVNPKYLR+LE S + + RG
Sbjct: 181 VLRKIDMQLQLSSAANQS---SVGASEPSQPTRGIHVNPKYLRRLEPSAAE----NNLRG 240
Query: 241 -TPALKLHDKKLASGYEEYDYDHADVLEHGRGQPFNSMGSMGHDSFAIGTKKSNIKIGKM 300
+ +++ + GY +++ D LE S S D F T++SN
Sbjct: 241 INSSARVYGQNSLGGYNDFE----DQLES------PSSLSSTPDGF---TRRSN------ 300
Query: 301 SSSSRIGHNRPLQSVGDEAVRASPSQNVYDYEGSRMMDRNEDTIIWRKNQYPNDNLNGLE 360
A+PS ++Y R R+++ + WR+ +
Sbjct: 301 -------------------DGANPSNQAFNYGMGRATSRDDEHMEWRRKE---------- 360
Query: 361 STSSYNIRNGHTLEGPRALIEAYGSDKGKGYLNDNSPQIEHFSINGLDNK-ATPVTWQNT 420
N+ G+ E PRALI+AYG D K ++ N P + +NG+ +K TP WQNT
Sbjct: 361 -----NLGQGNDHERPRALIDAYGVDTSK-HVTINKPIRD---MNGMHSKMVTP--WQNT 420
Query: 421 EEEEFDWEDMSPTLADRGRSNDVLKPPVP---PSRFRTRSNWSSQVQLPTTDSSIVIEDE 480
EEEEFDWEDMSPTL DR R+ + L+ VP R R R +S L +D + +
Sbjct: 421 EEEEFDWEDMSPTL-DRSRAGEFLRSSVPALGSVRARPRVGNTSDFHL-DSDIKNGVSHQ 480
Query: 481 LPSTSDVWNMRNHLTQTSQNHMNSKGTGRNFQMPSMRRGTASSGGEKMSPFVDKLLTNDA 540
L + W++ + TS N ++++ G++ ++ + G SS E +P D + D
Sbjct: 481 L---RENWSLSQNYPHTS-NRVDTR-AGKDLKVLASSVGLVSSNSEFGAPPFDSI--QDV 540
Query: 541 SHRPPTIVSRLGPSGLDSRMESQSVIHSMGPMHPVNVPNSCP-PSRPPNFLLPRHYKSQF 600
+ R R P G + ++ PNS P PS + L
Sbjct: 541 NSR----FGRALPDGTWPHLSARG-------------PNSLPVPSAHLHHL--------- 600
Query: 601 ESLNGSNSFINPAKKSYLLEQQMNNLRNKDLSLPNKLPQVVSQHIGRIPLTQGNQTQAIP 660
NP N L+ K L P QV H+ +TQ NQ
Sbjct: 601 ---------ANPG------NAMSNRLQGKPLYRPEN--QVSQSHLN--DMTQQNQ----- 660
Query: 661 LKHQFLPSQEMQDNSCASAIPPMLPHLMAPSLSQGYTSQRPAISECLSNSAPIGQWNLPV 720
+ +LPS +SA+ P + +S GY I LS
Sbjct: 661 MLVNYLPS--------SSAMAPRPMQSLLTHVSHGYPPHGSTIRPSLS------------ 720
Query: 721 PNSSSNPLHLQGVPMLPLPPRPHPTSVQGTSISQNAGSLVPGQQPGVGLSGLISSLMAQG 780
+QG + HP S +SQ S Q PG SGLI SLMAQG
Sbjct: 721 ---------IQGGEAM------HPLS--SGVLSQIGAS---NQPPGGAFSGLIGSLMAQG 780
Query: 781 LISLNNQASAQDSIGLEFNPDVLKVRHESAITALYANLPRQCMTCGLRFKSQEEHSNHMD 840
LISLNNQ + Q +GLEF+ D+LK+R+ESAI+ALY +LPRQC TCGLRFK QEEHS HMD
Sbjct: 781 LISLNNQPAGQGPLGLEFDADMLKIRNESAISALYGDLPRQCTTCGLRFKCQEEHSKHMD 808
Query: 841 WHVTRNRMSKSRKQKPSRKWFVSTSMWLSGAEALGTEAVPGFLPAEVIVEEKNDEELAVL 900
WHVT+NRMSK+ KQ PSRKWFVS SMWLSGAEALG EAVPGFLP E E+K+DE++AV
Sbjct: 841 WHVTKNRMSKNHKQNPSRKWFVSASMWLSGAEALGAEAVPGFLPTEPTTEKKDDEDMAVP 808
Query: 901 ADEDQKTCALCGEPFDDFYSDEAEEWMYRGAVYLNASDGQTTGMDVSQLGPIVHAKCRTE 960
ADEDQ +CALCGEPF+DFYSDE EEWMY+GAVY+NA + TT MD SQLGPIVHAKCR E
Sbjct: 901 ADEDQTSCALCGEPFEDFYSDETEEWMYKGAVYMNAPEESTTDMDKSQLGPIVHAKCRPE 808
Query: 961 SNVAPSESFDQDEQAGDSEESNRRKRLRS 978
SN GD EE ++RK++RS
Sbjct: 961 SN------------GGDMEEGSQRKKMRS 808
BLAST of Sed0013587 vs. ExPASy Swiss-Prot
Match:
Q9FIX8 (Polyadenylation and cleavage factor homolog 5 OS=Arabidopsis thaliana OX=3702 GN=PCFS5 PE=1 SV=1)
HSP 1 Score: 159.5 bits (402), Expect = 2.0e-37
Identity = 110/266 (41.35%), Postives = 143/266 (53.76%), Query Frame = 0
Query: 703 QWNLPVPNSSSN-PLHLQGVPMLPLPPRPHPTSVQGTSISQNAGSLVPG--QQPGVGLSG 762
QW VPNS+ N P+ +P P T+VQ N S+V QP V
Sbjct: 141 QW---VPNSTPNYPVRSSNF----VPNTPDFTNVQNPMNHSNMVSVVSQSMHQPIVLSKE 200
Query: 763 L--ISSLMAQGLISLNNQASAQDS--IGLEF-NPDVLKVRHESAITALYANLPRQCMTCG 822
L + SL+ ++AS DS +GL F NP L VRHES I +LY+++PRQC +CG
Sbjct: 201 LTDLLSLLNNEKEKKTSEASNNDSLPVGLSFDNPSSLNVRHESVIKSLYSDMPRQCTSCG 260
Query: 823 LRFKSQEEHSNHMDWHVTRNRMSKS-----RKQKPSRKWFVSTSMWLSGAEALGTEAVPG 882
+RFK QEEHS HMDWHV +NR K+ ++ K SR W S S+WL GT V
Sbjct: 261 VRFKCQEEHSKHMDWHVRKNRSVKTTTRLGQQPKKSRGWLASASLWLCAPTGGGTVEVAS 320
Query: 883 FLPAEVIVEEKNDE---ELAVLADEDQKTCALCGEPFDDFYSDEAEEWMYRGAVYLNASD 942
F E+ + + D+ + V ADEDQK CALC EPF++F+S EA++WMY+ AVYL +
Sbjct: 321 FGGGEMQKKNEKDQVQKQHMVPADEDQKNCALCVEPFEEFFSHEADDWMYKDAVYLTKN- 380
Query: 943 GQTTGMDVSQLGPIVHAKCRTESNVA 953
G IVH KC E A
Sbjct: 381 -----------GRIVHVKCMPEPRPA 387
BLAST of Sed0013587 vs. ExPASy Swiss-Prot
Match:
Q9C710 (Polyadenylation and cleavage factor homolog 1 OS=Arabidopsis thaliana OX=3702 GN=PCFS1 PE=1 SV=1)
HSP 1 Score: 155.6 bits (392), Expect = 2.9e-36
Identity = 107/247 (43.32%), Postives = 134/247 (54.25%), Query Frame = 0
Query: 726 LPPRPHPTSVQGTSISQNAGSLVPG--QQPGVGLSGLISSLMAQGLISLNN-------QA 785
+P P T+VQ N S+V QP V +S + L LNN +A
Sbjct: 165 VPNTPVFTNVQNPMNHSNMVSVVSQSMHQPIV-----LSKELTDLLSLLNNEKEKKTLEA 224
Query: 786 SAQDS--IGLEF-NPDVLKVRHESAITALYANLPRQCMTCGLRFKSQEEHSNHMDWHVTR 845
S DS +GL F NP L VRHES I +LY+++PRQC +CGLRFK QEEHS HMDWHV +
Sbjct: 225 SNSDSLPVGLSFDNPSSLNVRHESVIKSLYSDMPRQCSSCGLRFKCQEEHSKHMDWHVRK 284
Query: 846 NRMSKS-----RKQKPSRKWFVSTSMWLSGAEALGTEAVPGFLPAEVIVEEKNDEE---L 905
NR K+ ++ K SR W S S+WL A T V F E+ ++ DEE L
Sbjct: 285 NRSVKTTTRLGQQPKKSRGWLASASLWLCAATGGETVEVASF-GGEMQKKKGKDEEPKQL 344
Query: 906 AVLADEDQKTCALCGEPFDDFYSDEAEEWMYRGAVYLNASDGQTTGMDVSQLGPIVHAKC 953
V ADEDQK CALC EPF++F+S E ++WMY+ AVYL + G IVH KC
Sbjct: 345 MVPADEDQKNCALCVEPFEEFFSHEDDDWMYKDAVYLTKN------------GRIVHVKC 393
BLAST of Sed0013587 vs. ExPASy Swiss-Prot
Match:
O94913 (Pre-mRNA cleavage complex 2 protein Pcf11 OS=Homo sapiens OX=9606 GN=PCF11 PE=1 SV=3)
HSP 1 Score: 102.1 bits (253), Expect = 3.8e-20
Identity = 58/158 (36.71%), Postives = 84/158 (53.16%), Query Frame = 0
Query: 61 EDIVPLYELMLSELTFNSKPIITDLTVLADEQREHGKGIADLICSRILEVPVDQKLPSLY 120
ED Y+ L +LTFNSKP I LT+LA+E K I LI ++ + P +KLP +Y
Sbjct: 16 EDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEAQTAKAPSSEKLPVMY 75
Query: 121 LLDSIVKNVGHEYISYFSPRLPEVFCEAYRRVHPNQHNAMRHLFGTWSTVFPPSTLRKIE 180
L+DSIVKNVG EY++ F+ L F + +V N ++ L TW +FP L ++
Sbjct: 76 LMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRSTWDEIFPLKKLYALD 135
Query: 181 TQLSQLTTQEPSVLTSSRASESPRPAHGIHVNPKYLRQ 219
+++ L P + S IHVNPK+L +
Sbjct: 136 VRVNSLDPAWPIKPLPPNVNTS-----SIHVNPKFLNK 168
BLAST of Sed0013587 vs. ExPASy Swiss-Prot
Match:
P39081 (Protein PCF11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=PCF11 PE=1 SV=2)
HSP 1 Score: 82.8 bits (203), Expect = 2.4e-14
Identity = 53/130 (40.77%), Postives = 66/130 (50.77%), Query Frame = 0
Query: 58 HDAEDIVPLYELMLSELTFNSKPIITDLTVLADEQREHGKGIADLICSRILEVPVDQKLP 117
HD E IV + +L ELTFNS+PIIT LT LA+E + D I SRI + QKL
Sbjct: 3 HDTEVIVKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLY 62
Query: 118 SLYLLDSIVKNVGHEYISYFSPRLPEVFCEAYRRVHPNQHNAMRHLFGTWST-------V 177
+ Y LDSI KNVG Y YFS L ++ Y V + ++F W +
Sbjct: 63 AFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNPNDTGLPL 122
Query: 178 FPPSTLRKIE 181
F S L KIE
Sbjct: 123 FEGSALEKIE 132
BLAST of Sed0013587 vs. ExPASy TrEMBL
Match:
A0A1S3CJP9 (polyadenylation and cleavage factor homolog 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501218 PE=4 SV=1)
HSP 1 Score: 1557.7 bits (4032), Expect = 0.0e+00
Identity = 796/1013 (78.58%), Postives = 868/1013 (85.69%), Query Frame = 0
Query: 1 MESEKLLISRGNPRTAPYSS------ATARAMPNELPQKPPPSIAQRFRALIKHRDDEFR 60
MESEKLLISRGNPR + Y S + R MPNELPQKPPPSIA RFRA +K RDDEFR
Sbjct: 5 MESEKLLISRGNPRNSAYPSDRPIPTTSGRTMPNELPQKPPPSIAHRFRAQLKQRDDEFR 64
Query: 61 VSGHD------AEDIVPLYELMLSELTFNSKPIITDLTVLADEQREHGKGIADLICSRIL 120
VSGHD AEDIV LY+LMLSELTFNSKPIITDLTVLADEQREHGKGIADLIC+RIL
Sbjct: 65 VSGHDVVPPPTAEDIVQLYDLMLSELTFNSKPIITDLTVLADEQREHGKGIADLICARIL 124
Query: 121 EVPVDQKLPSLYLLDSIVKNVGHEYISYFSPRLPEVFCEAYRRVHPNQHNAMRHLFGTWS 180
EVPVDQKLPSLYLLDSIVKNVGHEYISYFS RLPEVFCEAYR+VHPN HNAMRHLFGTW+
Sbjct: 125 EVPVDQKLPSLYLLDSIVKNVGHEYISYFSSRLPEVFCEAYRQVHPNLHNAMRHLFGTWA 184
Query: 181 TVFPPSTLRKIETQLSQLTTQEPSVLTSSRASESPRPAHGIHVNPKYLRQLENSVGDK-- 240
TVFPPS +RKIE QLSQLT QE S LTSSRASESPRP HGIHVNPKYLRQLE+SV DK
Sbjct: 185 TVFPPSIIRKIEAQLSQLTAQESSGLTSSRASESPRPTHGIHVNPKYLRQLEHSVVDKLL 244
Query: 241 --QHIQDARGTPALKLHDKKLASGYEEYDYDHADVLEHGRGQPFNSMGSMGHDSFAIGTK 300
QH QD+RGT A+K+HDKKLASGYEEYDYDHAD LEHG Q F+SMGSMGHDSF++GT
Sbjct: 245 ALQHTQDSRGTSAIKVHDKKLASGYEEYDYDHADALEHGGAQEFHSMGSMGHDSFSLGTN 304
Query: 301 KSNIKIGKMSSSSRIGHNRPLQSVGD--EAVRASPSQNVYDYEGSRMMDRNEDTIIWRKN 360
K+N+K+ K S SSRIGH+RPLQS+GD E+VRASPSQNVYDYEGS+++DRNEDT WR+
Sbjct: 305 KANVKLAKSSLSSRIGHHRPLQSLGDELESVRASPSQNVYDYEGSKILDRNEDTNKWRRK 364
Query: 361 QYPNDNLNGLESTSSYNIRNGHTLEGPRALIEAYGSDKGKGYLNDNSPQIEHFSINGLDN 420
QYP+DN+NGLE+TSSYNIRNGH LEGPRALIEAYGSDKGKGYLNDN PQ EHFSI+G+DN
Sbjct: 365 QYPDDNMNGLENTSSYNIRNGHALEGPRALIEAYGSDKGKGYLNDNPPQAEHFSISGIDN 424
Query: 421 KATPVTWQNTEEEEFDWEDMSPTLADRGRSNDVLKPPVPPSRFRT--------------- 480
KATPVTWQNTEEEEFDWEDMSPTLADRGR+ND+LKP VPPSRFRT
Sbjct: 425 KATPVTWQNTEEEEFDWEDMSPTLADRGRNNDMLKPTVPPSRFRTRSGFERSNAMPIEPG 484
Query: 481 -RSNWSSQVQLPTTDSSIVIEDELPSTSDVWNMRNHLTQTSQNHMNSKGTGRNFQMPSMR 540
RSNWSSQVQLP DSSIVIED + ST D+W M NH++QTSQN MN+KG GRNFQMP +
Sbjct: 485 MRSNWSSQVQLPGIDSSIVIEDVVHSTPDIWKMHNHISQTSQNLMNNKGPGRNFQMPMLG 544
Query: 541 RGTASSGGEKMSPFVDKLLTNDASHRPPTIVSRLGPSGLDSRMESQSVIHSMGPMHPVNV 600
RG SSGGEKMSP+ DKLLTNDA HRP I SRLG SGLDS MESQS++ SMGP HP+N+
Sbjct: 545 RGITSSGGEKMSPYGDKLLTNDALHRPTNIASRLGSSGLDSNMESQSIVQSMGPRHPLNL 604
Query: 601 PNSCPPSRPPNFLLPRHYKSQFESLNGSNSFINPAKKSYLLEQQMNNLRNKDLSLPNKLP 660
NSCPPSRPP F +PRH SQFESLNGSNSF+N A +++L EQQMNNLRNK+LSL K P
Sbjct: 605 SNSCPPSRPPVFPVPRHNTSQFESLNGSNSFMNSANRTFLPEQQMNNLRNKELSLTTKSP 664
Query: 661 QVVSQHIGRIPLTQGNQTQAIPLKHQFLPSQEMQDNSCASAIPPMLPHLMAPSLSQGYTS 720
QV +QH G IPLT+GNQ Q++PLK QFLPSQ+MQDN SA+PP+LPHL+APSLSQGY S
Sbjct: 665 QVGNQHTGHIPLTRGNQLQSMPLKPQFLPSQDMQDNFSGSAVPPVLPHLIAPSLSQGYIS 724
Query: 721 Q--RPAISECLSNSAPIGQWNLPVPNSSSNPLHLQGVPMLPLPPRPHPTSVQGTSISQNA 780
Q RPA SE LS+SAPIGQWNL V NSSSNPLHLQG P+ PLPP PHPTS ISQ
Sbjct: 725 QGHRPANSEGLSSSAPIGQWNLSVHNSSSNPLHLQGGPLPPLPPGPHPTSGPTIPISQK- 784
Query: 781 GSLVPGQQPGVGLSGLISSLMAQGLISLNNQASAQDSIGLEFNPDVLKVRHESAITALYA 840
VPGQQPG +SGLISSLMA+GLISLNNQAS QDS+GLEFNPDVLKVRHESAITALYA
Sbjct: 785 ---VPGQQPGTAISGLISSLMARGLISLNNQASVQDSVGLEFNPDVLKVRHESAITALYA 844
Query: 841 NLPRQCMTCGLRFKSQEEHSNHMDWHVTRNRMSKSRKQKPSRKWFVSTSMWLSGAEALGT 900
+LPRQCMTCGLRFK+QEEHSNHMDWHVT+NRMSKSRKQKPSRKWFVS SMWLSGAEALGT
Sbjct: 845 DLPRQCMTCGLRFKTQEEHSNHMDWHVTKNRMSKSRKQKPSRKWFVSISMWLSGAEALGT 904
Query: 901 EAVPGFLPAEVIVEEKNDEELAVLADEDQKTCALCGEPFDDFYSDEAEEWMYRGAVYLNA 960
EAVPGFLPAEV+VE+K+DEELAV ADEDQKTCALCGEPF+DFYSDE EEWMYRGAVY+NA
Sbjct: 905 EAVPGFLPAEVVVEKKDDEELAVPADEDQKTCALCGEPFEDFYSDETEEWMYRGAVYMNA 964
Query: 961 SDGQTTGMDVSQLGPIVHAKCRTESNVAPSESFDQDEQAGDSEESNRRKRLRS 978
DGQT GMD SQLGPIVHAKCRTE+NV PSESFDQDE G SE+ NRRKRLRS
Sbjct: 965 PDGQTAGMDRSQLGPIVHAKCRTETNVVPSESFDQDE-GGVSEDGNRRKRLRS 1012
BLAST of Sed0013587 vs. ExPASy TrEMBL
Match:
A0A1S3CI66 (polyadenylation and cleavage factor homolog 4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501218 PE=4 SV=1)
HSP 1 Score: 1557.0 bits (4030), Expect = 0.0e+00
Identity = 795/1009 (78.79%), Postives = 867/1009 (85.93%), Query Frame = 0
Query: 1 MESEKLLISRGNPRTAPYSS------ATARAMPNELPQKPPPSIAQRFRALIKHRDDEFR 60
MESEKLLISRGNPR + Y S + R MPNELPQKPPPSIA RFRA +K RDDEFR
Sbjct: 5 MESEKLLISRGNPRNSAYPSDRPIPTTSGRTMPNELPQKPPPSIAHRFRAQLKQRDDEFR 64
Query: 61 VSGHD------AEDIVPLYELMLSELTFNSKPIITDLTVLADEQREHGKGIADLICSRIL 120
VSGHD AEDIV LY+LMLSELTFNSKPIITDLTVLADEQREHGKGIADLIC+RIL
Sbjct: 65 VSGHDVVPPPTAEDIVQLYDLMLSELTFNSKPIITDLTVLADEQREHGKGIADLICARIL 124
Query: 121 EVPVDQKLPSLYLLDSIVKNVGHEYISYFSPRLPEVFCEAYRRVHPNQHNAMRHLFGTWS 180
EVPVDQKLPSLYLLDSIVKNVGHEYISYFS RLPEVFCEAYR+VHPN HNAMRHLFGTW+
Sbjct: 125 EVPVDQKLPSLYLLDSIVKNVGHEYISYFSSRLPEVFCEAYRQVHPNLHNAMRHLFGTWA 184
Query: 181 TVFPPSTLRKIETQLSQLTTQEPSVLTSSRASESPRPAHGIHVNPKYLRQLENSVGDKQH 240
TVFPPS +RKIE QLSQLT QE S LTSSRASESPRP HGIHVNPKYLRQLE+SV DK H
Sbjct: 185 TVFPPSIIRKIEAQLSQLTAQESSGLTSSRASESPRPTHGIHVNPKYLRQLEHSVVDK-H 244
Query: 241 IQDARGTPALKLHDKKLASGYEEYDYDHADVLEHGRGQPFNSMGSMGHDSFAIGTKKSNI 300
QD+RGT A+K+HDKKLASGYEEYDYDHAD LEHG Q F+SMGSMGHDSF++GT K+N+
Sbjct: 245 TQDSRGTSAIKVHDKKLASGYEEYDYDHADALEHGGAQEFHSMGSMGHDSFSLGTNKANV 304
Query: 301 KIGKMSSSSRIGHNRPLQSVGD--EAVRASPSQNVYDYEGSRMMDRNEDTIIWRKNQYPN 360
K+ K S SSRIGH+RPLQS+GD E+VRASPSQNVYDYEGS+++DRNEDT WR+ QYP+
Sbjct: 305 KLAKSSLSSRIGHHRPLQSLGDELESVRASPSQNVYDYEGSKILDRNEDTNKWRRKQYPD 364
Query: 361 DNLNGLESTSSYNIRNGHTLEGPRALIEAYGSDKGKGYLNDNSPQIEHFSINGLDNKATP 420
DN+NGLE+TSSYNIRNGH LEGPRALIEAYGSDKGKGYLNDN PQ EHFSI+G+DNKATP
Sbjct: 365 DNMNGLENTSSYNIRNGHALEGPRALIEAYGSDKGKGYLNDNPPQAEHFSISGIDNKATP 424
Query: 421 VTWQNTEEEEFDWEDMSPTLADRGRSNDVLKPPVPPSRFRT----------------RSN 480
VTWQNTEEEEFDWEDMSPTLADRGR+ND+LKP VPPSRFRT RSN
Sbjct: 425 VTWQNTEEEEFDWEDMSPTLADRGRNNDMLKPTVPPSRFRTRSGFERSNAMPIEPGMRSN 484
Query: 481 WSSQVQLPTTDSSIVIEDELPSTSDVWNMRNHLTQTSQNHMNSKGTGRNFQMPSMRRGTA 540
WSSQVQLP DSSIVIED + ST D+W M NH++QTSQN MN+KG GRNFQMP + RG
Sbjct: 485 WSSQVQLPGIDSSIVIEDVVHSTPDIWKMHNHISQTSQNLMNNKGPGRNFQMPMLGRGIT 544
Query: 541 SSGGEKMSPFVDKLLTNDASHRPPTIVSRLGPSGLDSRMESQSVIHSMGPMHPVNVPNSC 600
SSGGEKMSP+ DKLLTNDA HRP I SRLG SGLDS MESQS++ SMGP HP+N+ NSC
Sbjct: 545 SSGGEKMSPYGDKLLTNDALHRPTNIASRLGSSGLDSNMESQSIVQSMGPRHPLNLSNSC 604
Query: 601 PPSRPPNFLLPRHYKSQFESLNGSNSFINPAKKSYLLEQQMNNLRNKDLSLPNKLPQVVS 660
PPSRPP F +PRH SQFESLNGSNSF+N A +++L EQQMNNLRNK+LSL K PQV +
Sbjct: 605 PPSRPPVFPVPRHNTSQFESLNGSNSFMNSANRTFLPEQQMNNLRNKELSLTTKSPQVGN 664
Query: 661 QHIGRIPLTQGNQTQAIPLKHQFLPSQEMQDNSCASAIPPMLPHLMAPSLSQGYTSQ--R 720
QH G IPLT+GNQ Q++PLK QFLPSQ+MQDN SA+PP+LPHL+APSLSQGY SQ R
Sbjct: 665 QHTGHIPLTRGNQLQSMPLKPQFLPSQDMQDNFSGSAVPPVLPHLIAPSLSQGYISQGHR 724
Query: 721 PAISECLSNSAPIGQWNLPVPNSSSNPLHLQGVPMLPLPPRPHPTSVQGTSISQNAGSLV 780
PA SE LS+SAPIGQWNL V NSSSNPLHLQG P+ PLPP PHPTS ISQ V
Sbjct: 725 PANSEGLSSSAPIGQWNLSVHNSSSNPLHLQGGPLPPLPPGPHPTSGPTIPISQK----V 784
Query: 781 PGQQPGVGLSGLISSLMAQGLISLNNQASAQDSIGLEFNPDVLKVRHESAITALYANLPR 840
PGQQPG +SGLISSLMA+GLISLNNQAS QDS+GLEFNPDVLKVRHESAITALYA+LPR
Sbjct: 785 PGQQPGTAISGLISSLMARGLISLNNQASVQDSVGLEFNPDVLKVRHESAITALYADLPR 844
Query: 841 QCMTCGLRFKSQEEHSNHMDWHVTRNRMSKSRKQKPSRKWFVSTSMWLSGAEALGTEAVP 900
QCMTCGLRFK+QEEHSNHMDWHVT+NRMSKSRKQKPSRKWFVS SMWLSGAEALGTEAVP
Sbjct: 845 QCMTCGLRFKTQEEHSNHMDWHVTKNRMSKSRKQKPSRKWFVSISMWLSGAEALGTEAVP 904
Query: 901 GFLPAEVIVEEKNDEELAVLADEDQKTCALCGEPFDDFYSDEAEEWMYRGAVYLNASDGQ 960
GFLPAEV+VE+K+DEELAV ADEDQKTCALCGEPF+DFYSDE EEWMYRGAVY+NA DGQ
Sbjct: 905 GFLPAEVVVEKKDDEELAVPADEDQKTCALCGEPFEDFYSDETEEWMYRGAVYMNAPDGQ 964
Query: 961 TTGMDVSQLGPIVHAKCRTESNVAPSESFDQDEQAGDSEESNRRKRLRS 978
T GMD SQLGPIVHAKCRTE+NV PSESFDQDE G SE+ NRRKRLRS
Sbjct: 965 TAGMDRSQLGPIVHAKCRTETNVVPSESFDQDE-GGVSEDGNRRKRLRS 1007
BLAST of Sed0013587 vs. ExPASy TrEMBL
Match:
A0A0A0LVG0 (CID domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G109350 PE=4 SV=1)
HSP 1 Score: 1551.6 bits (4016), Expect = 0.0e+00
Identity = 799/1009 (79.19%), Postives = 863/1009 (85.53%), Query Frame = 0
Query: 1 MESEKLLISRGNPRTAPYSS------ATARAMPNELPQKPPPSIAQRFRALIKHRDDEFR 60
MESEKLLISRGNPR + Y S + R MPNELPQKP PSIA RFRA +K RDDEFR
Sbjct: 5 MESEKLLISRGNPRNSVYPSDRPIPTTSGRTMPNELPQKPAPSIAHRFRAQLKQRDDEFR 64
Query: 61 VSGHD------AEDIVPLYELMLSELTFNSKPIITDLTVLADEQREHGKGIADLICSRIL 120
VSGHD AEDIV LY+LMLSELTFNSKPIITDLTVLADEQREHGKGIADLIC+RIL
Sbjct: 65 VSGHDVVPLPTAEDIVQLYDLMLSELTFNSKPIITDLTVLADEQREHGKGIADLICARIL 124
Query: 121 EVPVDQKLPSLYLLDSIVKNVGHEYISYFSPRLPEVFCEAYRRVHPNQHNAMRHLFGTWS 180
EVPVDQKLPSLYLLDSIVKNVGHEYISYF+ RLPEVFCEAYR+VHPN HNAMRHLFGTW+
Sbjct: 125 EVPVDQKLPSLYLLDSIVKNVGHEYISYFASRLPEVFCEAYRQVHPNLHNAMRHLFGTWA 184
Query: 181 TVFPPSTLRKIETQLSQLTTQEPSVLTSSRASESPRPAHGIHVNPKYLRQLENSVGDKQH 240
TVFPPS +RKIE QLSQLT QE S LTSSRASESPRP HGIHVNPKYLRQLE+SV DK H
Sbjct: 185 TVFPPSIIRKIEAQLSQLTAQESSGLTSSRASESPRPTHGIHVNPKYLRQLEHSVVDK-H 244
Query: 241 IQDARGTPALKLHDKKLASGYEEYDYDHADVLEHGRGQPFNSMGSMGHDSFAIGTKKSNI 300
QD+RGT A+K+HDKKLASGYEEYDYDHAD LEHG Q F+SMGSMGHDSF++GT K+NI
Sbjct: 245 SQDSRGTSAIKVHDKKLASGYEEYDYDHADALEHGGPQGFHSMGSMGHDSFSLGTNKANI 304
Query: 301 KIGKMSSSSRIGHNRPLQSVGD--EAVRASPSQNVYDYEGSRMMDRNEDTIIWRKNQYPN 360
K+ K S SSRIG +RPLQSVGD E VRASPSQNVYDYEGS+M+DRNEDT WR+ QYP+
Sbjct: 305 KLAKSSLSSRIGPHRPLQSVGDEHETVRASPSQNVYDYEGSKMIDRNEDTNKWRRKQYPD 364
Query: 361 DNLNGLESTSSYNIRNGHTLEGPRALIEAYGSDKGKGYLNDNSPQIEHFSINGLDNKATP 420
DNLNGLESTSSYNIRNGH LEGPRALIEAYGSDKGKGYLNDN PQ EHFSIN +DNKATP
Sbjct: 365 DNLNGLESTSSYNIRNGHALEGPRALIEAYGSDKGKGYLNDNPPQAEHFSINVIDNKATP 424
Query: 421 VTWQNTEEEEFDWEDMSPTLADRGRSNDVLKPPVPPSRFRT----------------RSN 480
VTWQNTEEEEFDWEDMSPTLADRGR+ND+LKPPVPPSRFRT RSN
Sbjct: 425 VTWQNTEEEEFDWEDMSPTLADRGRNNDMLKPPVPPSRFRTRSGFERSNAMPIEPGMRSN 484
Query: 481 WSSQVQLPTTDSSIVIEDELPSTSDVWNMRNHLTQTSQNHMNSKGTGRNFQMPSMRRGTA 540
WSS V+LP DSSIVIED + ST D WNM NH++QTSQN MN+KG GRNFQMP + RG
Sbjct: 485 WSSPVRLPGIDSSIVIEDVVHSTPDNWNMHNHISQTSQNLMNNKGQGRNFQMPMLGRGIT 544
Query: 541 SSGGEKMSPFVDKLLTNDASHRPPTIVSRLGPSGLDSRMESQSVIHSMGPMHPVNVPNSC 600
SS GEKMSP+ DKLLTNDA HRP I SRLG SGLDS MESQS++ SMGP HP+N+ NSC
Sbjct: 545 SSVGEKMSPYGDKLLTNDALHRPTNIASRLGSSGLDSSMESQSIVQSMGPRHPLNLSNSC 604
Query: 601 PPSRPPNFLLPRHYKSQFESLNGSNSFINPAKKSYLLEQQMNNLRNKDLSLPNKLPQVVS 660
PPSRPP F +PRH SQFESLNGSNSF+N A +++L EQQMNNLRNK+LSL K PQV +
Sbjct: 605 PPSRPPIFPVPRHNASQFESLNGSNSFMNCANRTFLPEQQMNNLRNKELSLTTKSPQVGN 664
Query: 661 QHIGRIPLTQGNQTQAIPLKHQFLPSQEMQDNSCASAIPPMLPHLMAPSLSQGYTSQ--R 720
QH G IPLT+GNQ Q +PLK QFLPSQ+MQDN SA+PP+LPHLMAPSLSQGY SQ R
Sbjct: 665 QHTGHIPLTRGNQLQGMPLKPQFLPSQDMQDNFSGSAVPPVLPHLMAPSLSQGYISQGHR 724
Query: 721 PAISECLSNSAPIGQWNLPVPNSSSNPLHLQGVPMLPLPPRPHPTSVQGTSISQNAGSLV 780
PAISE LS+SAPIGQWNL V NSSSNPLHLQG P+ PLPP PHPTS ISQ V
Sbjct: 725 PAISEGLSSSAPIGQWNLSVHNSSSNPLHLQGGPLPPLPPGPHPTSGPTIPISQK----V 784
Query: 781 PGQQPGVGLSGLISSLMAQGLISLNNQASAQDSIGLEFNPDVLKVRHESAITALYANLPR 840
PGQQPG +SGLISSLMA+GLISLNNQAS QDS+GLEFNPDVLKVRHESAITALYA+LPR
Sbjct: 785 PGQQPGTAISGLISSLMARGLISLNNQASVQDSVGLEFNPDVLKVRHESAITALYADLPR 844
Query: 841 QCMTCGLRFKSQEEHSNHMDWHVTRNRMSKSRKQKPSRKWFVSTSMWLSGAEALGTEAVP 900
QCMTCGLRFK+QEEHSNHMDWHVT+NRMSKSRKQKPSRKWFVS SMWLSGAEALGTEAVP
Sbjct: 845 QCMTCGLRFKTQEEHSNHMDWHVTKNRMSKSRKQKPSRKWFVSISMWLSGAEALGTEAVP 904
Query: 901 GFLPAEVIVEEKNDEELAVLADEDQKTCALCGEPFDDFYSDEAEEWMYRGAVYLNASDGQ 960
GFLPAEV+VE+K+DEELAV ADEDQKTCALCGEPF+DFYSDE EEWMYRGAVY+NA DGQ
Sbjct: 905 GFLPAEVVVEKKDDEELAVPADEDQKTCALCGEPFEDFYSDETEEWMYRGAVYMNAPDGQ 964
Query: 961 TTGMDVSQLGPIVHAKCRTESNVAPSESFDQDEQAGDSEESNRRKRLRS 978
T GMD+SQLGPIVHAKCRTE+NV PSESFDQDE G SEE NRRKRLRS
Sbjct: 965 TAGMDISQLGPIVHAKCRTETNVVPSESFDQDE-GGVSEEGNRRKRLRS 1007
BLAST of Sed0013587 vs. ExPASy TrEMBL
Match:
A0A5A7UC46 (Polyadenylation and cleavage factor-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G001150 PE=4 SV=1)
HSP 1 Score: 1529.2 bits (3958), Expect = 0.0e+00
Identity = 775/984 (78.76%), Postives = 846/984 (85.98%), Query Frame = 0
Query: 10 RGNPRTAPYSS------ATARAMPNELPQKPPPSIAQRFRALIKHRDDEFRVSGHD---- 69
RGNPR + Y S + R MPNELPQKPPPSIA RFRA +K RDDEFRVSGHD
Sbjct: 160 RGNPRNSAYPSDRPIPTTSGRTMPNELPQKPPPSIAHRFRAQLKQRDDEFRVSGHDVVPP 219
Query: 70 --AEDIVPLYELMLSELTFNSKPIITDLTVLADEQREHGKGIADLICSRILEVPVDQKLP 129
AEDIV LY+LMLSELTFNSKPIITDLTVLADEQREHGKGIADLIC+RILEVPVDQKLP
Sbjct: 220 PTAEDIVQLYDLMLSELTFNSKPIITDLTVLADEQREHGKGIADLICARILEVPVDQKLP 279
Query: 130 SLYLLDSIVKNVGHEYISYFSPRLPEVFCEAYRRVHPNQHNAMRHLFGTWSTVFPPSTLR 189
SLYLLDSIVKNVGHEYISYFS RLPEVFCEAYR+VHPN HNAMRHLFGTW+TVFPPS +R
Sbjct: 280 SLYLLDSIVKNVGHEYISYFSSRLPEVFCEAYRQVHPNLHNAMRHLFGTWATVFPPSIIR 339
Query: 190 KIETQLSQLTTQEPSVLTSSRASESPRPAHGIHVNPKYLRQLENSVGDKQHIQDARGTPA 249
KIE QLSQLT QE S LTSSRASESPRP HGIHVNPKYLRQLE+SV DK H QD+RGT A
Sbjct: 340 KIEAQLSQLTAQESSGLTSSRASESPRPTHGIHVNPKYLRQLEHSVVDK-HTQDSRGTSA 399
Query: 250 LKLHDKKLASGYEEYDYDHADVLEHGRGQPFNSMGSMGHDSFAIGTKKSNIKIGKMSSSS 309
+K+HDKKLASGYEEYDYDHAD LEHG Q F+SMGSMGHDSF++GT K+N+K+ K S SS
Sbjct: 400 IKVHDKKLASGYEEYDYDHADALEHGGAQEFHSMGSMGHDSFSLGTNKANVKLAKSSLSS 459
Query: 310 RIGHNRPLQSVGD--EAVRASPSQNVYDYEGSRMMDRNEDTIIWRKNQYPNDNLNGLEST 369
RIGH+RPLQS+GD E+VRASPSQNVYDYEGS+++DRNEDT WR+ QYP+DN+NGLE+T
Sbjct: 460 RIGHHRPLQSLGDELESVRASPSQNVYDYEGSKILDRNEDTNKWRRKQYPDDNMNGLENT 519
Query: 370 SSYNIRNGHTLEGPRALIEAYGSDKGKGYLNDNSPQIEHFSINGLDNKATPVTWQNTEEE 429
SSYNIRNGH LEGPRALIEAYGSDKGKGYLNDN PQ EHFSI+G+DNKATPVTWQNTEEE
Sbjct: 520 SSYNIRNGHALEGPRALIEAYGSDKGKGYLNDNPPQAEHFSISGIDNKATPVTWQNTEEE 579
Query: 430 EFDWEDMSPTLADRGRSNDVLKPPVPPSRFRT----------------RSNWSSQVQLPT 489
EFDWEDMSPTLADRGR+ND+LKP VPPSRFRT RSNWSSQVQLP
Sbjct: 580 EFDWEDMSPTLADRGRNNDMLKPTVPPSRFRTRSGFERSNAMPIEPGMRSNWSSQVQLPG 639
Query: 490 TDSSIVIEDELPSTSDVWNMRNHLTQTSQNHMNSKGTGRNFQMPSMRRGTASSGGEKMSP 549
DSSIVIED + ST D+W M NH++QTSQN MN+KG GRNFQMP + RG SSGGEKMSP
Sbjct: 640 IDSSIVIEDVVHSTPDIWKMHNHISQTSQNLMNNKGPGRNFQMPMLGRGITSSGGEKMSP 699
Query: 550 FVDKLLTNDASHRPPTIVSRLGPSGLDSRMESQSVIHSMGPMHPVNVPNSCPPSRPPNFL 609
+ DKLLTNDA HRP I SRLG SGLDS MESQS++ SMGP HP+N+ NSCPPSRPP F
Sbjct: 700 YGDKLLTNDALHRPTNIASRLGSSGLDSNMESQSIVQSMGPRHPLNLSNSCPPSRPPVFP 759
Query: 610 LPRHYKSQFESLNGSNSFINPAKKSYLLEQQMNNLRNKDLSLPNKLPQVVSQHIGRIPLT 669
+PRH SQFESLNGSNSF+N A +++L EQQMNNLRNK+LSL K PQV +QH G IPLT
Sbjct: 760 VPRHNTSQFESLNGSNSFMNSANRTFLPEQQMNNLRNKELSLTTKSPQVGNQHTGHIPLT 819
Query: 670 QGNQTQAIPLKHQFLPSQEMQDNSCASAIPPMLPHLMAPSLSQGYTSQ--RPAISECLSN 729
+GNQ Q++PLK QFLPSQ+MQDN SA+PP+LPHL+APSLSQGY SQ RPA SE LS+
Sbjct: 820 RGNQLQSMPLKPQFLPSQDMQDNFSGSAVPPVLPHLIAPSLSQGYISQGHRPANSEGLSS 879
Query: 730 SAPIGQWNLPVPNSSSNPLHLQGVPMLPLPPRPHPTSVQGTSISQNAGSLVPGQQPGVGL 789
SAPIGQWNL V NSSSNPLHLQG P+ PLPP PHPTS ISQ VPGQQPG +
Sbjct: 880 SAPIGQWNLSVHNSSSNPLHLQGGPLPPLPPGPHPTSGPTIPISQK----VPGQQPGTAI 939
Query: 790 SGLISSLMAQGLISLNNQASAQDSIGLEFNPDVLKVRHESAITALYANLPRQCMTCGLRF 849
SGLISSLMA+GLISLNNQAS QDS+GLEFNPDVLKVRHESAITALYA+LPRQCMTCGLRF
Sbjct: 940 SGLISSLMARGLISLNNQASVQDSVGLEFNPDVLKVRHESAITALYADLPRQCMTCGLRF 999
Query: 850 KSQEEHSNHMDWHVTRNRMSKSRKQKPSRKWFVSTSMWLSGAEALGTEAVPGFLPAEVIV 909
K+QEEHSNHMDWHVT+NRMSKSRKQKPSRKWFVS SMWLSGAEALGTEAVPGFLPAEV+V
Sbjct: 1000 KTQEEHSNHMDWHVTKNRMSKSRKQKPSRKWFVSISMWLSGAEALGTEAVPGFLPAEVVV 1059
Query: 910 EEKNDEELAVLADEDQKTCALCGEPFDDFYSDEAEEWMYRGAVYLNASDGQTTGMDVSQL 962
E+K+DEELAV ADEDQKTCALCGEPF+DFYSDE EEWMYRGAVY+NA DGQT GMD SQL
Sbjct: 1060 EKKDDEELAVPADEDQKTCALCGEPFEDFYSDETEEWMYRGAVYMNAPDGQTAGMDRSQL 1119
BLAST of Sed0013587 vs. ExPASy TrEMBL
Match:
A0A6J1GUI7 (polyadenylation and cleavage factor homolog 4-like OS=Cucurbita moschata OX=3662 GN=LOC111457064 PE=4 SV=1)
HSP 1 Score: 1522.3 bits (3940), Expect = 0.0e+00
Identity = 795/1010 (78.71%), Postives = 852/1010 (84.36%), Query Frame = 0
Query: 1 MESEKLLISRGNPRTAPYSS------ATARAMPNELPQKPPPSIAQRFRALIKHRDDEFR 60
ME EKLLISRGNPR A YSS + RAMPNEL QKPP SIA RFRA +K RDDEFR
Sbjct: 5 MELEKLLISRGNPRAAAYSSDRQLPTTSGRAMPNELSQKPPSSIAHRFRAQLKQRDDEFR 64
Query: 61 VSGHD------AEDIVPLYELMLSELTFNSKPIITDLTVLADEQREHGKGIADLICSRIL 120
VSGHD +E IV LYELMLSELTFNSKPIITDLTVLADEQREHGKGIADLIC+RIL
Sbjct: 65 VSGHDSVPPPSSEFIVQLYELMLSELTFNSKPIITDLTVLADEQREHGKGIADLICTRIL 124
Query: 121 EVPVDQKLPSLYLLDSIVKNVGHEYISYFSPRLPEVFCEAYRRVHPNQHNAMRHLFGTWS 180
EVPVDQKLPSLYLLDSIVKNVGH Y+SYFS RLPEVF EAYR+VHPNQHNAMRHLFGTWS
Sbjct: 125 EVPVDQKLPSLYLLDSIVKNVGHGYVSYFSSRLPEVFFEAYRQVHPNQHNAMRHLFGTWS 184
Query: 181 TVFPPSTLRKIETQLSQLTTQEPSVLTSSRASESPRPAHGIHVNPKYLRQLENSVGDKQH 240
VFPPS LRKIE QLSQLTTQE S LTSSRAS SPRP H IHVNPKYLRQLE+SV DK H
Sbjct: 185 NVFPPSVLRKIEAQLSQLTTQESSGLTSSRASGSPRPTHSIHVNPKYLRQLEHSVVDK-H 244
Query: 241 IQDARGTPALKLHDKKLASGYEEYDYDHADVLEHGRGQPFNSMGSMGHDSFAIGTKKSNI 300
IQDARGT +LK++ KKLA GYEEYDYDH DVLEH Q FNSMGS+GHDSF +GT K+N+
Sbjct: 245 IQDARGTSSLKVNGKKLAPGYEEYDYDHTDVLEHSGAQTFNSMGSVGHDSFGLGTNKANV 304
Query: 301 KIGKMSSSSRIGHNRPLQSVGD--EAVRASPSQNVYDYEGSRMMDRNEDTIIWRKNQYPN 360
KIGK S SSRIGHNRPLQSVGD EAVRASP QNVY+YEGSRMMDRNE R+ QYP
Sbjct: 305 KIGKSSFSSRIGHNRPLQSVGDELEAVRASPLQNVYEYEGSRMMDRNEVAYKRRRTQYPE 364
Query: 361 DNLNGLESTSSYNIRNGHTLEGPRALIEAYGSDKGKGYLNDNSPQIEHFSINGLDNKATP 420
+NLNGLESTSSY+IRNG LEGPRALIEAYGSDKGKGYLNDN PQ+EHFSI G+DNK TP
Sbjct: 365 ENLNGLESTSSYDIRNGRDLEGPRALIEAYGSDKGKGYLNDNPPQVEHFSIYGMDNKVTP 424
Query: 421 VTWQNTEEEEFDWEDMSPTLADRGRSNDVLKPPVPPSRFRT----------------RSN 480
VTWQNTEEEEFDWEDMSPTLADRGRSND LKP VPPSRFRT R+N
Sbjct: 425 VTWQNTEEEEFDWEDMSPTLADRGRSNDALKPSVPPSRFRTRLGFDRRNAMSMELGMRNN 484
Query: 481 WSSQVQLPTT-DSSIVIEDELPSTSDVWNMRNHLTQTSQNHMNSKGTGRNFQMPSMRRGT 540
WSSQVQLPT+ DSS+VIED +PSTSD+WNM N L+Q+SQN MN+KGTGRNFQMP + RG
Sbjct: 485 WSSQVQLPTSIDSSMVIEDGVPSTSDIWNMHNPLSQSSQNLMNTKGTGRNFQMPVLGRGI 544
Query: 541 ASSGGEKMSPFVDKLLTNDASHRPPTIVSRLGPSGLDSRMESQSVIHSMGPMHPVNVPNS 600
ASSGGEKMS FVDKLLTN A HRPPTIVS LG SGLDS MESQSV+ SMGP HPVNVP+S
Sbjct: 545 ASSGGEKMSHFVDKLLTNGAVHRPPTIVSSLGSSGLDSSMESQSVVQSMGPRHPVNVPDS 604
Query: 601 CPPSRPPNFLLPRHYKSQFESLNGSNSFINPAKKSYLLEQQMNNLRNKDLSLPNKLPQVV 660
CPPSR F +PRH+KSQFESLNGSNS IN A +S+L EQQMNNLRNK+ SL LPQV
Sbjct: 605 CPPSRSSIFPVPRHHKSQFESLNGSNSVINRANRSFLPEQQMNNLRNKEPSLATNLPQVG 664
Query: 661 SQHIGRIPLTQGNQTQAIPLKHQFLPSQEMQDNSCASAIPPMLPHLMAPSLSQGYTSQ-- 720
+QH G IPLTQGNQ QA PLK +FLPS +MQDN ASA+PP LPHLMAPS +QGY+SQ
Sbjct: 665 NQHTGHIPLTQGNQLQATPLKPKFLPSPDMQDNFSASAVPPALPHLMAPSSNQGYSSQGH 724
Query: 721 RPAISECLSNSAPIGQWNLPVPNSSSNPLHLQGVPMLPLPPRPHPTSVQGTSISQNAGSL 780
RP +S+CLS+SAPIGQWNLPV N S LHLQG P+ LP PHP ISQNAGSL
Sbjct: 725 RPVVSDCLSSSAPIGQWNLPVHNRPST-LHLQGGPLPSLPTGPHP-------ISQNAGSL 784
Query: 781 VPGQQPGVGLSGLISSLMAQGLISLNNQASAQDSIGLEFNPDVLKVRHESAITALYANLP 840
VPGQQPG SGLI+SLMAQGLISLNNQAS QDS+GLEFNPD+LKVRHE AIT+LYA+LP
Sbjct: 785 VPGQQPGTAFSGLINSLMAQGLISLNNQASVQDSVGLEFNPDLLKVRHEYAITSLYADLP 844
Query: 841 RQCMTCGLRFKSQEEHSNHMDWHVTRNRMSKSRKQKPSRKWFVSTSMWLSGAEALGTEAV 900
RQCMTCGLRFKSQEEHSNHMDWHVTRNRMSKSRKQKPSRKWFVST+MWLSGAEALGTE V
Sbjct: 845 RQCMTCGLRFKSQEEHSNHMDWHVTRNRMSKSRKQKPSRKWFVSTTMWLSGAEALGTEPV 904
Query: 901 PGFLPAEVIVEEKNDEELAVLADEDQKTCALCGEPFDDFYSDEAEEWMYRGAVYLNASDG 960
PGFLPAEVIVE+K+DEELAV ADEDQKTCALCGE FDDFYSDE EEWMYRGAVY+NA DG
Sbjct: 905 PGFLPAEVIVEKKDDEELAVPADEDQKTCALCGESFDDFYSDETEEWMYRGAVYMNAPDG 964
Query: 961 QTTGMDVSQLGPIVHAKCRTESNVAPSESFDQDEQAGDSEESNRRKRLRS 978
QT GMD SQLGPIVHAKCRTES+ APSE+ DQDEQ G SEE NRRKRLRS
Sbjct: 965 QTAGMDKSQLGPIVHAKCRTESSAAPSENLDQDEQGGVSEEGNRRKRLRS 1005
BLAST of Sed0013587 vs. TAIR 10
Match:
AT4G04885.1 (PCF11P-similar protein 4 )
HSP 1 Score: 609.4 bits (1570), Expect = 5.1e-174
Identity = 425/989 (42.97%), Postives = 546/989 (55.21%), Query Frame = 0
Query: 1 MESEKLLISRGNPRTAPYSSATARAMPNELPQK--PPPSIAQRFRALIKHRDDEF----R 60
M+SEK+L NPR +S + + M ELPQK PPPS+ RF+AL+ R+DEF
Sbjct: 1 MDSEKIL----NPRLVSINSTSRKGMSVELPQKPPPPPSLLDRFKALLNQREDEFGGGEE 60
Query: 61 VSGHDAEDIVPLYELMLSELTFNSKPIITDLTVLADEQREHGKGIADLICSRILEVPVDQ 120
V ++IV LYE++L ELTFNSKPIITDLT++A EQREHG+GIA+ IC+RILE PV+Q
Sbjct: 61 VLPPSMDEIVQLYEVVLGELTFNSKPIITDLTIIAGEQREHGEGIANAICTRILEAPVEQ 120
Query: 121 KLPSLYLLDSIVKNVGHEYISYFSPRLPEVFCEAYRRVHPNQHNAMRHLFGTWSTVFPPS 180
KLPSLYLLDSIVKN+G +Y YFS RLPEVFC AYR+ HP+ H +MRHLFGTWS+VFPP
Sbjct: 121 KLPSLYLLDSIVKNIGRDYGRYFSSRLPEVFCLAYRQAHPSLHPSMRHLFGTWSSVFPPP 180
Query: 181 TLRKIETQLSQLTTQEPSVLTSSRASESPRPAHGIHVNPKYLRQLENSVGDKQHIQDARG 240
LRKI+ QL + S S ASE +P GIHVNPKYLR+LE S + + RG
Sbjct: 181 VLRKIDMQLQLSSAANQS---SVGASEPSQPTRGIHVNPKYLRRLEPSAAE----NNLRG 240
Query: 241 -TPALKLHDKKLASGYEEYDYDHADVLEHGRGQPFNSMGSMGHDSFAIGTKKSNIKIGKM 300
+ +++ + GY +++ D LE S S D F T++SN
Sbjct: 241 INSSARVYGQNSLGGYNDFE----DQLES------PSSLSSTPDGF---TRRSN------ 300
Query: 301 SSSSRIGHNRPLQSVGDEAVRASPSQNVYDYEGSRMMDRNEDTIIWRKNQYPNDNLNGLE 360
A+PS ++Y R R+++ + WR+ +
Sbjct: 301 -------------------DGANPSNQAFNYGMGRATSRDDEHMEWRRKE---------- 360
Query: 361 STSSYNIRNGHTLEGPRALIEAYGSDKGKGYLNDNSPQIEHFSINGLDNK-ATPVTWQNT 420
N+ G+ E PRALI+AYG D K ++ N P + +NG+ +K TP WQNT
Sbjct: 361 -----NLGQGNDHERPRALIDAYGVDTSK-HVTINKPIRD---MNGMHSKMVTP--WQNT 420
Query: 421 EEEEFDWEDMSPTLADRGRSNDVLKPPVP---PSRFRTRSNWSSQVQLPTTDSSIVIEDE 480
EEEEFDWEDMSPTL DR R+ + L+ VP R R R +S L +D + +
Sbjct: 421 EEEEFDWEDMSPTL-DRSRAGEFLRSSVPALGSVRARPRVGNTSDFHL-DSDIKNGVSHQ 480
Query: 481 LPSTSDVWNMRNHLTQTSQNHMNSKGTGRNFQMPSMRRGTASSGGEKMSPFVDKLLTNDA 540
L + W++ + TS N ++++ G++ ++ + G SS E +P D + D
Sbjct: 481 L---RENWSLSQNYPHTS-NRVDTR-AGKDLKVLASSVGLVSSNSEFGAPPFDSI--QDV 540
Query: 541 SHRPPTIVSRLGPSGLDSRMESQSVIHSMGPMHPVNVPNSCP-PSRPPNFLLPRHYKSQF 600
+ R R P G + ++ PNS P PS + L
Sbjct: 541 NSR----FGRALPDGTWPHLSARG-------------PNSLPVPSAHLHHL--------- 600
Query: 601 ESLNGSNSFINPAKKSYLLEQQMNNLRNKDLSLPNKLPQVVSQHIGRIPLTQGNQTQAIP 660
NP N L+ K L P QV H+ +TQ NQ
Sbjct: 601 ---------ANPG------NAMSNRLQGKPLYRPEN--QVSQSHLN--DMTQQNQ----- 660
Query: 661 LKHQFLPSQEMQDNSCASAIPPMLPHLMAPSLSQGYTSQRPAISECLSNSAPIGQWNLPV 720
+ +LPS +SA+ P + +S GY I LS
Sbjct: 661 MLVNYLPS--------SSAMAPRPMQSLLTHVSHGYPPHGSTIRPSLS------------ 720
Query: 721 PNSSSNPLHLQGVPMLPLPPRPHPTSVQGTSISQNAGSLVPGQQPGVGLSGLISSLMAQG 780
+QG + HP S +SQ S Q PG SGLI SLMAQG
Sbjct: 721 ---------IQGGEAM------HPLS--SGVLSQIGAS---NQPPGGAFSGLIGSLMAQG 780
Query: 781 LISLNNQASAQDSIGLEFNPDVLKVRHESAITALYANLPRQCMTCGLRFKSQEEHSNHMD 840
LISLNNQ + Q +GLEF+ D+LK+R+ESAI+ALY +LPRQC TCGLRFK QEEHS HMD
Sbjct: 781 LISLNNQPAGQGPLGLEFDADMLKIRNESAISALYGDLPRQCTTCGLRFKCQEEHSKHMD 808
Query: 841 WHVTRNRMSKSRKQKPSRKWFVSTSMWLSGAEALGTEAVPGFLPAEVIVEEKNDEELAVL 900
WHVT+NRMSK+ KQ PSRKWFVS SMWLSGAEALG EAVPGFLP E E+K+DE++AV
Sbjct: 841 WHVTKNRMSKNHKQNPSRKWFVSASMWLSGAEALGAEAVPGFLPTEPTTEKKDDEDMAVP 808
Query: 901 ADEDQKTCALCGEPFDDFYSDEAEEWMYRGAVYLNASDGQTTGMDVSQLGPIVHAKCRTE 960
ADEDQ +CALCGEPF+DFYSDE EEWMY+GAVY+NA + TT MD SQLGPIVHAKCR E
Sbjct: 901 ADEDQTSCALCGEPFEDFYSDETEEWMYKGAVYMNAPEESTTDMDKSQLGPIVHAKCRPE 808
Query: 961 SNVAPSESFDQDEQAGDSEESNRRKRLRS 978
SN GD EE ++RK++RS
Sbjct: 961 SN------------GGDMEEGSQRKKMRS 808
BLAST of Sed0013587 vs. TAIR 10
Match:
AT2G36480.1 (ENTH/VHS family protein )
HSP 1 Score: 202.2 bits (513), Expect = 1.9e-51
Identity = 245/903 (27.13%), Postives = 388/903 (42.97%), Query Frame = 0
Query: 108 LEVPVDQKLPSLYLLDSIVKNVGHEYISYFSPRLPEVFCEAYRRVHPNQHNAMRHLFGTW 167
++VP DQKLP+LYLLDSIVKN+G +YI YF RLPEVF +AYR+V P H+ MRHLFGTW
Sbjct: 1 MQVPSDQKLPTLYLLDSIVKNIGRDYIKYFGARLPEVFVKAYRQVDPPMHSNMRHLFGTW 60
Query: 168 STVFPPSTLRKIETQLSQLTTQEPS--VLTSSRAS-ESPRPAHGIHVNPKYLRQLENSVG 227
VF P TL+ IE +L + S V++++RA +S RP H IHVNPKYL
Sbjct: 61 KGVFHPQTLQLIEKELGFNAKSDGSAAVVSTARAEPQSQRPPHSIHVNPKYL-------- 120
Query: 228 DKQHIQDARGTPALKLHDKKLASGYEEYDYDHADVLEHGRGQPFNSMGSMGHDSFAIGTK 287
++Q +Q + T + + A + R + +S+ S G S+ K
Sbjct: 121 ERQRLQQSGRTKGMVTDVPETAPNLTR---------DSDRLERVSSIASGG--SWVGPAK 180
Query: 288 KSNIKIGKMSSSSRIGHNRPLQSVGDEAVRASP----SQNVYDYEGSRMMDRN-EDTIIW 347
+NI+ + S + + ++S+ E AS S++V GSR+ D E
Sbjct: 181 VNNIRRPQRDLLSEPLYEKDIESIAGEYDYASDLPHNSRSVIKNVGSRITDDGCEKQWYG 240
Query: 348 RKNQYP---NDNLNGLESTSSYNIRNGHTLEGPRALIEAYGSDKGKGYLNDNSPQIEHFS 407
N+ P +D +GL S S R + +E+ G + G D
Sbjct: 241 ATNRDPDLISDQRDGLHSKS----RTSNYATARVENLESSGPSRNIGVPYD--------- 300
Query: 408 INGLDNKATPVTWQNTEEEEFDWEDMSPTLADRG----RSNDVLKPPVPPSRFRTRSNWS 467
+W+N+EEEEF W DM L++ + L P R + ++
Sbjct: 301 -----------SWKNSEEEEFMW-DMHSRLSETDVATINPKNELHAPDESERLESENHLL 360
Query: 468 SQVQLPTTD---------SSIVIEDELPSTSDVWNMRNHLTQTSQNHMNSKGTGRNFQ-M 527
+ + D +S E + PS+ W S + S T + Q
Sbjct: 361 KRPRFSALDPRFDPANSTNSYSSEQKDPSSIGHWAF-------SSTNATSTATRKGIQPQ 420
Query: 528 PSMRRG----TASSGGEKMSPFVDKL----LTNDASHRPPTIVSRLGPSGLDSRMESQSV 587
P + ++ SG ++ SP D +T R ++ R D R
Sbjct: 421 PRVASSGILPSSGSGSDRQSPLHDSTSKQNVTKQDVRRAHSLPQR------DPRASRFPA 480
Query: 588 IHSMGPMHPVNVPNSCPPSRPPNFL-LPRHY---KSQFESLNG---SNSFINPAKKSYLL 647
++ V +P+S + N LP KS E+ G ++ S LL
Sbjct: 481 KQNVPRDDSVRLPSSSSQFKNTNMRELPVEIFDSKSAAENAPGLTLASEATGQPNMSDLL 540
Query: 648 EQQMNN--LRNKDLSLPNKLPQVVSQHIGRIPLTQGNQTQAIPLK---HQFLPSQEMQDN 707
E M + L N K + G + L ++ + +P+ L +++ +
Sbjct: 541 EAVMKSGILSNNSTCGAIKEESHDEVNPGALTLPAASKPKTLPISLATDNLLARLKVEQS 600
Query: 708 -----SCASAIPPMLPHLMAPSLSQGYTSQRPAISECLSNSAPIGQWNLPVPNSSSNPLH 767
SCA++ L + + S+ + +S LS+ G S++
Sbjct: 601 SAPLVSCAAS----LTGITSVQTSKEKSKASDPLSCLLSSLVSKGL-------ISASKTE 660
Query: 768 LQGVPMLPLPPRPHPTSVQGTSISQNAGSLVPGQ-QPGVGLSGLISSLMAQGLI--SLNN 827
L P + P ++ S+ S+VP QP V + G ++ +GL S +
Sbjct: 661 LPSAPSITQEHSPDHSTNSSMSV-----SVVPADAQPSVLVKGPSTAPKVKGLAAPSETS 720
Query: 828 QASAQDSIGLEFNPDVLKVRHESAITALYANLPRQCMTCGLRFKSQEEHSNHMDWHVTRN 887
++ +D IGL+F D ++ H S I++L+ +LP C +C +R K +EE HM+ H +
Sbjct: 721 KSEPKDLIGLKFRADKIRELHPSVISSLFDDLPHLCTSCSVRLKQKEELDRHMELH-DKK 780
Query: 888 RMSKSRKQKPSRKWFVSTSMWLSGAEALGTEAVPGFLPAEVIVEEKN--DEELAVLADED 947
++ S R WF W++ A E P + EV+ E ++ ++ AV ADE
Sbjct: 781 KLELSGTNSKCRVWFPKVDNWIA---AKAGELEPEY--EEVLSEPESAIEDCQAVAADET 819
Query: 948 QKTCALCGEPFDDFYSDEAEEWMYRGAVYLNASDGQTTGMDVSQLGPIVHAKCRTESNVA 956
Q C LCGE F+D++S E +WM++GA YL + GPIVH C T S++
Sbjct: 841 QCACILCGEVFEDYFSQEMAQWMFKGASYLTNPPANSEAS-----GPIVHTGCLTTSSLQ 819
BLAST of Sed0013587 vs. TAIR 10
Match:
AT2G36480.3 (ENTH/VHS family protein )
HSP 1 Score: 202.2 bits (513), Expect = 1.9e-51
Identity = 245/903 (27.13%), Postives = 388/903 (42.97%), Query Frame = 0
Query: 108 LEVPVDQKLPSLYLLDSIVKNVGHEYISYFSPRLPEVFCEAYRRVHPNQHNAMRHLFGTW 167
++VP DQKLP+LYLLDSIVKN+G +YI YF RLPEVF +AYR+V P H+ MRHLFGTW
Sbjct: 1 MQVPSDQKLPTLYLLDSIVKNIGRDYIKYFGARLPEVFVKAYRQVDPPMHSNMRHLFGTW 60
Query: 168 STVFPPSTLRKIETQLSQLTTQEPS--VLTSSRAS-ESPRPAHGIHVNPKYLRQLENSVG 227
VF P TL+ IE +L + S V++++RA +S RP H IHVNPKYL
Sbjct: 61 KGVFHPQTLQLIEKELGFNAKSDGSAAVVSTARAEPQSQRPPHSIHVNPKYL-------- 120
Query: 228 DKQHIQDARGTPALKLHDKKLASGYEEYDYDHADVLEHGRGQPFNSMGSMGHDSFAIGTK 287
++Q +Q + T + + A + R + +S+ S G S+ K
Sbjct: 121 ERQRLQQSGRTKGMVTDVPETAPNLTR---------DSDRLERVSSIASGG--SWVGPAK 180
Query: 288 KSNIKIGKMSSSSRIGHNRPLQSVGDEAVRASP----SQNVYDYEGSRMMDRN-EDTIIW 347
+NI+ + S + + ++S+ E AS S++V GSR+ D E
Sbjct: 181 VNNIRRPQRDLLSEPLYEKDIESIAGEYDYASDLPHNSRSVIKNVGSRITDDGCEKQWYG 240
Query: 348 RKNQYP---NDNLNGLESTSSYNIRNGHTLEGPRALIEAYGSDKGKGYLNDNSPQIEHFS 407
N+ P +D +GL S S R + +E+ G + G D
Sbjct: 241 ATNRDPDLISDQRDGLHSKS----RTSNYATARVENLESSGPSRNIGVPYD--------- 300
Query: 408 INGLDNKATPVTWQNTEEEEFDWEDMSPTLADRG----RSNDVLKPPVPPSRFRTRSNWS 467
+W+N+EEEEF W DM L++ + L P R + ++
Sbjct: 301 -----------SWKNSEEEEFMW-DMHSRLSETDVATINPKNELHAPDESERLESENHLL 360
Query: 468 SQVQLPTTD---------SSIVIEDELPSTSDVWNMRNHLTQTSQNHMNSKGTGRNFQ-M 527
+ + D +S E + PS+ W S + S T + Q
Sbjct: 361 KRPRFSALDPRFDPANSTNSYSSEQKDPSSIGHWAF-------SSTNATSTATRKGIQPQ 420
Query: 528 PSMRRG----TASSGGEKMSPFVDKL----LTNDASHRPPTIVSRLGPSGLDSRMESQSV 587
P + ++ SG ++ SP D +T R ++ R D R
Sbjct: 421 PRVASSGILPSSGSGSDRQSPLHDSTSKQNVTKQDVRRAHSLPQR------DPRASRFPA 480
Query: 588 IHSMGPMHPVNVPNSCPPSRPPNFL-LPRHY---KSQFESLNG---SNSFINPAKKSYLL 647
++ V +P+S + N LP KS E+ G ++ S LL
Sbjct: 481 KQNVPRDDSVRLPSSSSQFKNTNMRELPVEIFDSKSAAENAPGLTLASEATGQPNMSDLL 540
Query: 648 EQQMNN--LRNKDLSLPNKLPQVVSQHIGRIPLTQGNQTQAIPLK---HQFLPSQEMQDN 707
E M + L N K + G + L ++ + +P+ L +++ +
Sbjct: 541 EAVMKSGILSNNSTCGAIKEESHDEVNPGALTLPAASKPKTLPISLATDNLLARLKVEQS 600
Query: 708 -----SCASAIPPMLPHLMAPSLSQGYTSQRPAISECLSNSAPIGQWNLPVPNSSSNPLH 767
SCA++ L + + S+ + +S LS+ G S++
Sbjct: 601 SAPLVSCAAS----LTGITSVQTSKEKSKASDPLSCLLSSLVSKGL-------ISASKTE 660
Query: 768 LQGVPMLPLPPRPHPTSVQGTSISQNAGSLVPGQ-QPGVGLSGLISSLMAQGLI--SLNN 827
L P + P ++ S+ S+VP QP V + G ++ +GL S +
Sbjct: 661 LPSAPSITQEHSPDHSTNSSMSV-----SVVPADAQPSVLVKGPSTAPKVKGLAAPSETS 720
Query: 828 QASAQDSIGLEFNPDVLKVRHESAITALYANLPRQCMTCGLRFKSQEEHSNHMDWHVTRN 887
++ +D IGL+F D ++ H S I++L+ +LP C +C +R K +EE HM+ H +
Sbjct: 721 KSEPKDLIGLKFRADKIRELHPSVISSLFDDLPHLCTSCSVRLKQKEELDRHMELH-DKK 780
Query: 888 RMSKSRKQKPSRKWFVSTSMWLSGAEALGTEAVPGFLPAEVIVEEKN--DEELAVLADED 947
++ S R WF W++ A E P + EV+ E ++ ++ AV ADE
Sbjct: 781 KLELSGTNSKCRVWFPKVDNWIA---AKAGELEPEY--EEVLSEPESAIEDCQAVAADET 819
Query: 948 QKTCALCGEPFDDFYSDEAEEWMYRGAVYLNASDGQTTGMDVSQLGPIVHAKCRTESNVA 956
Q C LCGE F+D++S E +WM++GA YL + GPIVH C T S++
Sbjct: 841 QCACILCGEVFEDYFSQEMAQWMFKGASYLTNPPANSEAS-----GPIVHTGCLTTSSLQ 819
BLAST of Sed0013587 vs. TAIR 10
Match:
AT2G36480.2 (ENTH/VHS family protein )
HSP 1 Score: 201.1 bits (510), Expect = 4.2e-51
Identity = 247/913 (27.05%), Postives = 392/913 (42.94%), Query Frame = 0
Query: 108 LEVPVDQKLPSLYLLDSIVKNVGHEYISYFSPRLPEVFCEAYRRVHPNQHNAMRHLFGTW 167
++VP DQKLP+LYLLDSIVKN+G +YI YF RLPEVF +AYR+V P H+ MRHLFGTW
Sbjct: 1 MQVPSDQKLPTLYLLDSIVKNIGRDYIKYFGARLPEVFVKAYRQVDPPMHSNMRHLFGTW 60
Query: 168 STVFPPSTLRKIETQLSQLTTQEPS--VLTSSRAS-ESPRPAHGIHVNPKYLRQLENSVG 227
VF P TL+ IE +L + S V++++RA +S RP H IHVNPKYL
Sbjct: 61 KGVFHPQTLQLIEKELGFNAKSDGSAAVVSTARAEPQSQRPPHSIHVNPKYL-------- 120
Query: 228 DKQHIQDARGTPALKLHDKKLASGYEEYDYDHADVLEHGRGQPFNSMGSMGHDSFAIGTK 287
++Q +Q + T + + A + R + +S+ S G S+ K
Sbjct: 121 ERQRLQQSGRTKGMVTDVPETAPNLTR---------DSDRLERVSSIASGG--SWVGPAK 180
Query: 288 KSNIKIGKMSSSSRIGHNRPLQSVGDEAVRASP----SQNVYDYEGSRMMDRN-EDTIIW 347
+NI+ + S + + ++S+ E AS S++V GSR+ D E
Sbjct: 181 VNNIRRPQRDLLSEPLYEKDIESIAGEYDYASDLPHNSRSVIKNVGSRITDDGCEKQWYG 240
Query: 348 RKNQYP---NDNLNGLESTSSYNIRNGHTLEGPRALIEAYGSDKGKGYLNDNSPQIEHFS 407
N+ P +D +GL S S R + +E+ G + G D
Sbjct: 241 ATNRDPDLISDQRDGLHSKS----RTSNYATARVENLESSGPSRNIGVPYD--------- 300
Query: 408 INGLDNKATPVTWQNTEEEEFDWEDMSPTLADRG----RSNDVLKPPVPPSRFRTRSNWS 467
+W+N+EEEEF W DM L++ + L P R + ++
Sbjct: 301 -----------SWKNSEEEEFMW-DMHSRLSETDVATINPKNELHAPDESERLESENHLL 360
Query: 468 SQVQLPTTD---------SSIVIEDELPSTSDVWNMRNHLTQTSQNHMNSKGTGRNFQ-M 527
+ + D +S E + PS+ W S + S T + Q
Sbjct: 361 KRPRFSALDPRFDPANSTNSYSSEQKDPSSIGHWAF-------SSTNATSTATRKGIQPQ 420
Query: 528 PSMRRG----TASSGGEKMSPFVDKL----LTNDASHRPPTIVSRLGPSGLDSRMESQSV 587
P + ++ SG ++ SP D +T R ++ R D R
Sbjct: 421 PRVASSGILPSSGSGSDRQSPLHDSTSKQNVTKQDVRRAHSLPQR------DPRASRFPA 480
Query: 588 IHSMGPMHPVNVPNSCPPSRPPNFL-LPRHY---KSQFESLNG---SNSFINPAKKSYLL 647
++ V +P+S + N LP KS E+ G ++ S LL
Sbjct: 481 KQNVPRDDSVRLPSSSSQFKNTNMRELPVEIFDSKSAAENAPGLTLASEATGQPNMSDLL 540
Query: 648 EQQMNN--LRNKDLSLPNKLPQVVSQHIGRIPLTQGNQTQAIPLK---HQFLPSQEMQDN 707
E M + L N K + G + L ++ + +P+ L +++ +
Sbjct: 541 EAVMKSGILSNNSTCGAIKEESHDEVNPGALTLPAASKPKTLPISLATDNLLARLKVEQS 600
Query: 708 -----SCASAIPPMLPHLMAPSLSQGYTSQRPAISECLSNSAPIGQWNLPVPNSSSNPLH 767
SCA++ L + + S+ + +S LS+ G S++
Sbjct: 601 SAPLVSCAAS----LTGITSVQTSKEKSKASDPLSCLLSSLVSKGL-------ISASKTE 660
Query: 768 LQGVPMLPLPPRPHPTSVQGTSISQNAGSLVPGQ-QPGVGLSGLISSLMAQGLI--SLNN 827
L P + P ++ S+ S+VP QP V + G ++ +GL S +
Sbjct: 661 LPSAPSITQEHSPDHSTNSSMSV-----SVVPADAQPSVLVKGPSTAPKVKGLAAPSETS 720
Query: 828 QASAQDSIGLEFNPDVLKVRHESAITALYANLPRQCMTCGLRFKSQEEHSNHMDWHVTRN 887
++ +D IGL+F D ++ H S I++L+ +LP C +C +R K +EE HM+ H +
Sbjct: 721 KSEPKDLIGLKFRADKIRELHPSVISSLFDDLPHLCTSCSVRLKQKEELDRHMELH-DKK 780
Query: 888 RMSKSRKQKPSRKWFVSTSMWLSGAEALGTEAVPGFLPAEVIVEEKN--DEELAVLADED 947
++ S R WF W++ A E P + EV+ E ++ ++ AV ADE
Sbjct: 781 KLELSGTNSKCRVWFPKVDNWIA---AKAGELEPEY--EEVLSEPESAIEDCQAVAADET 829
Query: 948 QKTCALCGEPFDDFYSDEAEEWMYRGAVYLNASDGQTTGMDVSQLGPIVHAKCRTESNVA 966
Q C LCGE F+D++S E +WM++GA YL + GPIVH C T S++
Sbjct: 841 QCACILCGEVFEDYFSQEMAQWMFKGASYLTNPPANSEAS-----GPIVHTGCLTTSSLQ 829
BLAST of Sed0013587 vs. TAIR 10
Match:
AT5G43620.1 (Pre-mRNA cleavage complex II )
HSP 1 Score: 159.5 bits (402), Expect = 1.4e-38
Identity = 110/266 (41.35%), Postives = 143/266 (53.76%), Query Frame = 0
Query: 703 QWNLPVPNSSSN-PLHLQGVPMLPLPPRPHPTSVQGTSISQNAGSLVPG--QQPGVGLSG 762
QW VPNS+ N P+ +P P T+VQ N S+V QP V
Sbjct: 141 QW---VPNSTPNYPVRSSNF----VPNTPDFTNVQNPMNHSNMVSVVSQSMHQPIVLSKE 200
Query: 763 L--ISSLMAQGLISLNNQASAQDS--IGLEF-NPDVLKVRHESAITALYANLPRQCMTCG 822
L + SL+ ++AS DS +GL F NP L VRHES I +LY+++PRQC +CG
Sbjct: 201 LTDLLSLLNNEKEKKTSEASNNDSLPVGLSFDNPSSLNVRHESVIKSLYSDMPRQCTSCG 260
Query: 823 LRFKSQEEHSNHMDWHVTRNRMSKS-----RKQKPSRKWFVSTSMWLSGAEALGTEAVPG 882
+RFK QEEHS HMDWHV +NR K+ ++ K SR W S S+WL GT V
Sbjct: 261 VRFKCQEEHSKHMDWHVRKNRSVKTTTRLGQQPKKSRGWLASASLWLCAPTGGGTVEVAS 320
Query: 883 FLPAEVIVEEKNDE---ELAVLADEDQKTCALCGEPFDDFYSDEAEEWMYRGAVYLNASD 942
F E+ + + D+ + V ADEDQK CALC EPF++F+S EA++WMY+ AVYL +
Sbjct: 321 FGGGEMQKKNEKDQVQKQHMVPADEDQKNCALCVEPFEEFFSHEADDWMYKDAVYLTKN- 380
Query: 943 GQTTGMDVSQLGPIVHAKCRTESNVA 953
G IVH KC E A
Sbjct: 381 -----------GRIVHVKCMPEPRPA 387
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038894060.1 | 0.0e+00 | 79.58 | polyadenylation and cleavage factor homolog 4 isoform X3 [Benincasa hispida] | [more] |
XP_008462960.1 | 0.0e+00 | 78.58 | PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X1 [Cucumis mel... | [more] |
XP_008462986.1 | 0.0e+00 | 78.79 | PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X2 [Cucumis mel... | [more] |
XP_011653866.1 | 0.0e+00 | 79.19 | polyadenylation and cleavage factor homolog 4 [Cucumis sativus] >XP_031739723.1 ... | [more] |
XP_038894058.1 | 0.0e+00 | 79.58 | polyadenylation and cleavage factor homolog 4 isoform X1 [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |
Q0WPF2 | 7.2e-173 | 42.97 | Polyadenylation and cleavage factor homolog 4 OS=Arabidopsis thaliana OX=3702 GN... | [more] |
Q9FIX8 | 2.0e-37 | 41.35 | Polyadenylation and cleavage factor homolog 5 OS=Arabidopsis thaliana OX=3702 GN... | [more] |
Q9C710 | 2.9e-36 | 43.32 | Polyadenylation and cleavage factor homolog 1 OS=Arabidopsis thaliana OX=3702 GN... | [more] |
O94913 | 3.8e-20 | 36.71 | Pre-mRNA cleavage complex 2 protein Pcf11 OS=Homo sapiens OX=9606 GN=PCF11 PE=1 ... | [more] |
P39081 | 2.4e-14 | 40.77 | Protein PCF11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292... | [more] |
Match Name | E-value | Identity | Description | |
A0A1S3CJP9 | 0.0e+00 | 78.58 | polyadenylation and cleavage factor homolog 4 isoform X1 OS=Cucumis melo OX=3656... | [more] |
A0A1S3CI66 | 0.0e+00 | 78.79 | polyadenylation and cleavage factor homolog 4 isoform X2 OS=Cucumis melo OX=3656... | [more] |
A0A0A0LVG0 | 0.0e+00 | 79.19 | CID domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G109350 PE=4 SV... | [more] |
A0A5A7UC46 | 0.0e+00 | 78.76 | Polyadenylation and cleavage factor-like protein 4 isoform X2 OS=Cucumis melo va... | [more] |
A0A6J1GUI7 | 0.0e+00 | 78.71 | polyadenylation and cleavage factor homolog 4-like OS=Cucurbita moschata OX=3662... | [more] |