Sed0013564 (gene) Chayote v1

Overview


Name	Sed0013564
Type	gene
Organism	Sechium edule (Chayote v1)
Description	30S ribosomal protein S17, chloroplastic
Location	LG06: 2485050 .. 2488878 (+)
RNA-Seq Expression	Sed0013564
Synteny	Sed0013564

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCCTTAGAACCCTAGTTTTCCTCTTTCTTTCCGCAACCATCTTCTTTGCTATCTCTACTTCAGCCGTAAATCTTTCACCCAATTTCTTTCCTTCGATGATTTTAGGAACCCACTAATTCGGATTCGTGAATTTGTTCATCCAATCCAATCCATTTCCAGTTTTGCTCAAAACCCTCGGATTTGTAGCAGCTTCTAGGGTTTTTGTTCTTCATTTTTGGGGGATCAGTTTTCATTCAATCCGAGGAACAGGATGAAGCAGGTAGTGGGCATGGTGGTCTCAAACAAGATGCAGAAATCAGTGGTGGTTGCTGTGGATAGATTGTTCTATCATAAGCTCTATAATCGTTACGTTAAGCGTACTTCCAAGTTCATGGCTCACGATGAGAATAATCAGTGCAATATTGGTGACAAGGTTCGAATTCAATCCCATCTTTTATTGTTATTTTTTTCATTTCTATGTATTCGATCATGTTATGGACTTGATTCTTTGTTTCGGTCATAATATAATGAAAATTTGGTTCCCAAAAGGTGGCGCAGTGGTTGAAGACTTGGGCTTTGTGGGTATACTCCCCTCACGGTCCCAGGTTCGAGACTCACCTGTCTCTGTCTCTGGTGTGGAGCCTAGACGGGTGTGATTACCCTTGTTTTAAAAAAAAACATCATGAAAATTTGTCACCAAGCGGTGGCGTGGTAGTCGAAGGCAGGCGTGCCCCTCTTAAGGTCATAGTTGGATACTCACCTGAGACATTAAGTTGTAGACACCTACATTGTCTCCGTTCCTTTGATGTCTCTTGCCGTGTCTCAATTCCTTCAATGCTGGTGCACGAGACGGACATGGTTACTGTGGTTATCGTGAGTGAAGCTTTGATTTCTCGGTTTAAAAAAAAAAAATTGAAAATTTGTTTCACAACATTGCCTTATTGGATGAAATTACAAATGTTCTCTGTATTTTTGAAGAATCAAGCTTTCTTTTTGCTTGAGCTTTGAATGGTTTCGTCATTGAATTTACTAATGCATAGGGTTCGTTTATATGATTATTTTCTCGTTTTTATTTTTCTAGACATGAGCATCTGACTGAGTATGTTTCAGAGCATTGATGGTAGAATTAGTTTTGCATGCTAGGGGCGGTCTGGCTGGCAGAGACTTGGAGTCTTCAAAGGTTTGGACTCCAAGGTTGGTCCCAAATTTGAAACCCACGGGCGAATTTAGTAAAATCTCTTGTTGTCTCCCGAGTCAGGGTACCCTCGGATAAACCAAAATCTCCCACGCGATTAGTTACAAATGCCTTTAACAAGCATTCGCCACAGTACCGGTTATAAAAAAAAGCATAAACAGAGAGTGGTCCTTAATACTTTAACATTTATAGTTTCTAATGAACTGATGAAACAAATTAAATTTTTTAAATCAGGTTAAACTGGATCCTTCTAGGCCGTTGAGCAAGCATAAACATTGGGTGGTTGCTGAAATTTTGAGGAAAGCACGGATTTACGTACCACAATCACAGCATCAAAACCAAACTGTTTCAGACAAAAGCAAAGTTCCATCTCCTTCAACCTCCTAAGGTTCGATTGATACATTTGTTATTTTCTTTATAGGAAGCCGAACTGGTATCTTATTGTTTTTTGGGTTGTTTATTTGGATCAATCATAATCATCTGAATCCCCGATGACTATTTGCGTGATCTTATGGTTTAAACACTGTTTTGCTTCTCTTCATTGGTTTGTAGACAATATTTTGTACAAAGCATTTTGTCATTTTTTTTATGGCATGATGGGTTCTTGAATTGTTCTTAAAAATGGAATGATATGACTGTGTGCATCGTGCTAAGAAGATCGAGTAATAAAACCAAGTTGAAGTATTTTGATATTATTGAAACTAATGTACTTCTGAAAATGGTTTTATGTGCTATAATGACATATAATGTCTTACTCTCAATTGTTTTGTGGGAACTCAAGATGCCCTTCCTATGGTATTTAGATCCCTCTGTTTCGAATTTGATGGTTAATCTATTTTATTTTTGTTGCATTTTAATGACTTCATGCTTTGCTTGTAGTGAACTATGAGGCCCATCTTGTGTTTCTAAAACAAAAGTTAAGAAAAATTTGCTTGAAAAGAAAAGAAAAAGAAAAATTTGCTAGAAAACGATTTCATATCTTGTTAAAAAAAGAACGGAACATAATTGTTAGTATAGCTCGTTAGTGGTTCAAAATTTTGATTTGAAGTGTGAGAGATGATATACTTTATCTTGCAAAAAGTCCTATGTTGTTCATAGCTATCATGGCAGGGTTGGATTAAAGTTCAATAATTCTAATTAATGAGGGTTTGTTGAGTGGTTTTCTTTTTGGCAAACAAAACAGTAAAAATGCTGAATCTTGTGGAGAAAATTAAAGTCGATGGAAAATTAAGTTGCTTTCTTCTAGTTGAAATAGGCTTTTTGAGGCTACCATGATAGGATTCTCGACTAATTGCCCACATACCCCTATTTCTTCTAGTTGAAATAGGGGTATGTGCTCAATTAGTTGAGAGTTTGTTCAGAGAATTGATCATAAATAGAGGGATATGGAATCTTTTGACCTTTTTGTCGAAATAGGTCTCTTGTATTTTCCTATCAATAGAATTTGAATTCTATCGATTGGTATTAGAGTCGTTCAGTTGCTGCACTGATCAACTCTTTTTGAGCAAATAGAGGCAAACTGTCAAAAAGAGTAGAAAAAAAATTAATGAAGATGCCTTGAAATGAAAAAAAGGACCGGTTACTAGAAAAACAAAAAGAAGAGATCGATGTGGTGAATTATAATAAGGTAGGAGAAATTTTGGAAATGCAAAAGGTGGAAAAAAAGAAGAAACAGAGAGTTCTTTTGAAGAATTTGGCGAAGAGAAGAAAAAAGACAAAAACAAAAACATTAAATATATATATATTACAAAAAGTAGTGCACAAGAAGTCCTCAAGAGGGATGGAGTCGTAAACAAACTTATTGTCAAGATGAGGACCGAGGTTGCCAAAAATGGGTTGTTGCAACTGGTGATGGTTGGAGACGAAGAACTTGAAGCGATGTCAACACAAGCGATTACGAACGGGAAAACAAAAATGTTGAAAAAGAGCGTTGAAATAATCAGAAAAGATCGTCATTGCGGGGAGTGGTCACTAAATCAAGGAAACTCCACTGGAAGGACATGGTCGTTGATCGTTCATTGCGAAGAAAAAGATGCACTTTCAACCACTAGCTGCACTTCCTAAGTTCCTACAAGATCTTGAACAATTCCTGATTTCCTGTGATGCAATTTTTTCTTTTTTTGTTGCGATAACCAAACTCGGCATAACTCGATTGACTATGGTACTATAACTTTGACCAAAAGGTTAGAAGTTCGAATCTTGTTGAACTTAAAAAATGAAAAATCTTGAAGTAGTAGGTCGAGGTGATTTGTTTTCATGCATATACATATTATTTTCTTTTCAGGTTATATGGCTCCCTCTGACCATACATATTTCTTTGTACAACCATATAGGGGAAACTACTGCAAAGTAGATCGAAAAGTTTGAGGCCAAAGTAGATCGAAAAGTTTTTGCATCGAAAAAACTTTAGGATGAAAGCTCTGGAAAATGGCTACTGTAAGCAGTATGTTTGTCATGTCAAAGATTTGAAGCTGCGTGACTGTTATATTTTGTACTGTTTAGTTTCAACCTTTTTCCCATCAGTAATTTCTCCACAATCTTTTGGGAAGTTGAAACTCGAAATTTTTATGAATTCAAAAGTTTCCATCCACAAGGTATTTACCACTTGGTTGAACTCAACAGGTTATTTATGATTCTAAGATTTTGTTTCATA

mRNA sequence

ATTCCTTAGAACCCTAGTTTTCCTCTTTCTTTCCGCAACCATCTTCTTTGCTATCTCTACTTCAGCCGTAAATCTTTCACCCAATTTCTTTCCTTCGATGATTTTAGGAACCCACTAATTCGGATTCGTGAATTTGTTCATCCAATCCAATCCATTTCCAGTTTTGCTCAAAACCCTCGGATTTGTAGCAGCTTCTAGGGTTTTTGTTCTTCATTTTTGGGGGATCAGTTTTCATTCAATCCGAGGAACAGGATGAAGCAGGTAGTGGGCATGGTGGTCTCAAACAAGATGCAGAAATCAGTGGTGGTTGCTGTGGATAGATTGTTCTATCATAAGCTCTATAATCGTTACGTTAAGCGTACTTCCAAGTTCATGGCTCACGATGAGAATAATCAGTGCAATATTGGTGACAAGGTTAAACTGGATCCTTCTAGGCCGTTGAGCAAGCATAAACATTGGGTGGTTGCTGAAATTTTGAGGAAAGCACGGATTTACGTACCACAATCACAGCATCAAAACCAAACTGTTTCAGACAAAAGCAAAGTTCCATCTCCTTCAACCTCCTAAGGGGAAACTACTGCAAAGTAGATCGAAAAGTTTGAGGCCAAAGTAGATCGAAAAGTTTTTGCATCGAAAAAACTTTAGGATGAAAGCTCTGGAAAATGGCTACTGTAAGCAGTATGTTTGTCATGTCAAAGATTTGAAGCTGCGTGACTGTTATATTTTGTACTGTTTAGTTTCAACCTTTTTCCCATCAGTAATTTCTCCACAATCTTTTGGGAAGTTGAAACTCGAAATTTTTATGAATTCAAAAGTTTCCATCCACAAGGTATTTACCACTTGGTTGAACTCAACAGGTTATTTATGATTCTAAGATTTTGTTTCATA

Coding sequence (CDS)

ATGAAGCAGGTAGTGGGCATGGTGGTCTCAAACAAGATGCAGAAATCAGTGGTGGTTGCTGTGGATAGATTGTTCTATCATAAGCTCTATAATCGTTACGTTAAGCGTACTTCCAAGTTCATGGCTCACGATGAGAATAATCAGTGCAATATTGGTGACAAGGTTAAACTGGATCCTTCTAGGCCGTTGAGCAAGCATAAACATTGGGTGGTTGCTGAAATTTTGAGGAAAGCACGGATTTACGTACCACAATCACAGCATCAAAACCAAACTGTTTCAGACAAAAGCAAAGTTCCATCTCCTTCAACCTCCTAA

Protein sequence

MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKHWVVAEILRKARIYVPQSQHQNQTVSDKSKVPSPSTS

Homology

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BLAST of Sed0013564 vs. NCBI nr
Match: XP_022155383.1 (uncharacterized protein LOC111022528 [Momordica charantia])

HSP 1 Score: 181.0 bits (458), Expect = 5.2e-42
Identity = 93/104 (89.42%), Postives = 98/104 (94.23%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 61  RPLSKHKHWVVAEILRKARIYVPQSQHQNQTVSDKSKVPSPSTS 105
           RPLSKHKHW+VAEILRKARIYVP SQ  +QT SDKSK  +PST+
Sbjct: 61  RPLSKHKHWMVAEILRKARIYVPPSQ-DSQTSSDKSKAAAPSTT 103

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BLAST of Sed0013564 vs. NCBI nr
Match: XP_016903240.1 (PREDICTED: 30S ribosomal protein S17-like [Cucumis melo])

HSP 1 Score: 180.6 bits (457), Expect = 6.7e-42
Identity = 94/104 (90.38%), Postives = 97/104 (93.27%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 61  RPLSKHKHWVVAEILRKARIYVPQSQHQNQTVSDKSKVPSPSTS 105
           RPLSK KHWVVAEILRKARIY P SQ  NQTVSDKS V +PST+
Sbjct: 61  RPLSKRKHWVVAEILRKARIYEPPSQ-DNQTVSDKSNVSAPSTT 103

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BLAST of Sed0013564 vs. NCBI nr
Match: KAA0041013.1 (30S ribosomal protein S17-like [Cucumis melo var. makuwa])

HSP 1 Score: 180.6 bits (457), Expect = 6.7e-42
Identity = 94/104 (90.38%), Postives = 97/104 (93.27%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPS
Sbjct: 51  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 110

Query: 61  RPLSKHKHWVVAEILRKARIYVPQSQHQNQTVSDKSKVPSPSTS 105
           RPLSK KHWVVAEILRKARIY P SQ  NQTVSDKS V +PST+
Sbjct: 111 RPLSKRKHWVVAEILRKARIYEPPSQ-DNQTVSDKSNVSAPSTT 153

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BLAST of Sed0013564 vs. NCBI nr
Match: TYK20371.1 (30S ribosomal protein S17-like [Cucumis melo var. makuwa])

HSP 1 Score: 180.6 bits (457), Expect = 6.7e-42
Identity = 94/104 (90.38%), Postives = 97/104 (93.27%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPS
Sbjct: 51  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 110

Query: 61  RPLSKHKHWVVAEILRKARIYVPQSQHQNQTVSDKSKVPSPSTS 105
           RPLSK KHWVVAEILRKARIY P SQ  NQTVSDKS V +PST+
Sbjct: 111 RPLSKRKHWVVAEILRKARIYEPPSQ-DNQTVSDKSNVSAPSTT 153

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BLAST of Sed0013564 vs. NCBI nr
Match: XP_038891417.1 (30S ribosomal protein S17-like [Benincasa hispida])

HSP 1 Score: 180.3 bits (456), Expect = 8.8e-42
Identity = 93/104 (89.42%), Postives = 97/104 (93.27%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+V+LDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVRLDPS 60

Query: 61  RPLSKHKHWVVAEILRKARIYVPQSQHQNQTVSDKSKVPSPSTS 105
           RPLSKHKHWVVAEILRKARIY P S+  NQ VSDKSK  +PSTS
Sbjct: 61  RPLSKHKHWVVAEILRKARIYEPPSK-DNQIVSDKSKASAPSTS 103

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BLAST of Sed0013564 vs. ExPASy Swiss-Prot
Match: B1I1J7 (30S ribosomal protein S17 OS=Desulforudis audaxviator (strain MP104C) OX=477974 GN=rpsQ PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.0e-21
Identity = 49/75 (65.33%), Postives = 60/75 (80.00%), Query Frame = 0


Query: 6  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSK 65
          G VVS+KM K+VVVAVD L  H LY R V+RT KFMAHDE+NQC IGDKVK+  +RPLS+
Sbjct: 11 GRVVSDKMDKTVVVAVDTLVKHPLYGRTVRRTRKFMAHDEDNQCRIGDKVKIAETRPLSR 70

Query: 66 HKHWVVAEILRKARI 81
          HK W VAE+L +++I
Sbjct: 71 HKRWRVAEVLERSQI 85

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BLAST of Sed0013564 vs. ExPASy Swiss-Prot
Match: A7HM43 (30S ribosomal protein S17 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) OX=381764 GN=rpsQ PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.4e-19
Identity = 44/79 (55.70%), Postives = 60/79 (75.95%), Query Frame = 0


Query: 2  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSR 61
          K++VG+VVS+KM K+V V V+RL  H  + +YVKRT KF AHDENN C +GD V+++ SR
Sbjct: 4  KRLVGVVVSDKMDKTVTVKVERLVKHAKFGKYVKRTKKFYAHDENNACRVGDVVEIEESR 63

Query: 62 PLSKHKHWVVAEILRKARI 81
          PLSK K WVV  IL ++++
Sbjct: 64 PLSKLKRWVVVNILERSKL 82

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BLAST of Sed0013564 vs. ExPASy Swiss-Prot
Match: Q8R7W3 (30S ribosomal protein S17 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=rpsQ PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-18
Identity = 43/74 (58.11%), Postives = 56/74 (75.68%), Query Frame = 0


Query: 5  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLS 64
          +G VVSNKMQK++VVAV+  F H LY + VKRT K+  HDENN CN+GD VK+  +RPLS
Sbjct: 10 IGTVVSNKMQKTIVVAVEDKFRHPLYGKIVKRTKKYKVHDENNICNVGDVVKIMETRPLS 69

Query: 65 KHKHWVVAEILRKA 79
          K K W + E+++KA
Sbjct: 70 KEKRWRLVEVIKKA 83

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BLAST of Sed0013564 vs. ExPASy Swiss-Prot
Match: A8ZV66 (30S ribosomal protein S17 OS=Desulfococcus oleovorans (strain DSM 6200 / JCM 39069 / Hxd3) OX=96561 GN=rpsQ PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-18
Identity = 44/77 (57.14%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 2  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSR 61
          +Q  G VVS+KM K+V+VAV+RL  H+ Y +YV+RT+KF AHDE NQC +GDKV +  SR
Sbjct: 8  RQFEGTVVSDKMDKTVIVAVERLVKHQEYKKYVRRTAKFAAHDEQNQCAVGDKVIITESR 67

Query: 62 PLSKHKHWVVAEILRKA 79
          PLS+ KHW V  ++ KA
Sbjct: 68 PLSRTKHWRVVNVVEKA 84

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BLAST of Sed0013564 vs. ExPASy Swiss-Prot
Match: Q6LVA7 (30S ribosomal protein S17 OS=Photobacterium profundum (strain SS9) OX=298386 GN=rpsQ PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-18
Identity = 40/76 (52.63%), Postives = 58/76 (76.32%), Query Frame = 0


Query: 5  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLS 64
          +G V+S+KM KS+VVA++R+  H +Y +Y+KRT+K  AHDENN+CN+GD V++   RPLS
Sbjct: 9  LGRVISSKMDKSIVVAIERMVKHPMYGKYIKRTTKLHAHDENNECNLGDTVEVRECRPLS 68

Query: 65 KHKHWVVAEILRKARI 81
          K K W +  I+ KAR+
Sbjct: 69 KTKSWTLVRIVEKARV 84

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BLAST of Sed0013564 vs. ExPASy TrEMBL
Match: A0A6J1DMT5 (30S ribosomal protein S17, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111022528 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.5e-42
Identity = 93/104 (89.42%), Postives = 98/104 (94.23%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 61  RPLSKHKHWVVAEILRKARIYVPQSQHQNQTVSDKSKVPSPSTS 105
           RPLSKHKHW+VAEILRKARIYVP SQ  +QT SDKSK  +PST+
Sbjct: 61  RPLSKHKHWMVAEILRKARIYVPPSQ-DSQTSSDKSKAAAPSTT 103

[Close]

BLAST of Sed0013564 vs. ExPASy TrEMBL
Match: A0A5D3D9X1 (30S ribosomal protein S17, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold228G00680 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.3e-42
Identity = 94/104 (90.38%), Postives = 97/104 (93.27%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPS
Sbjct: 51  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 110

Query: 61  RPLSKHKHWVVAEILRKARIYVPQSQHQNQTVSDKSKVPSPSTS 105
           RPLSK KHWVVAEILRKARIY P SQ  NQTVSDKS V +PST+
Sbjct: 111 RPLSKRKHWVVAEILRKARIYEPPSQ-DNQTVSDKSNVSAPSTT 153

[Close]

BLAST of Sed0013564 vs. ExPASy TrEMBL
Match: A0A5A7TD01 (30S ribosomal protein S17, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold125G002330 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.3e-42
Identity = 94/104 (90.38%), Postives = 97/104 (93.27%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPS
Sbjct: 51  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 110

Query: 61  RPLSKHKHWVVAEILRKARIYVPQSQHQNQTVSDKSKVPSPSTS 105
           RPLSK KHWVVAEILRKARIY P SQ  NQTVSDKS V +PST+
Sbjct: 111 RPLSKRKHWVVAEILRKARIYEPPSQ-DNQTVSDKSNVSAPSTT 153

[Close]

BLAST of Sed0013564 vs. ExPASy TrEMBL
Match: A0A1S4E5I9 (30S ribosomal protein S17, chloroplastic OS=Cucumis melo OX=3656 GN=LOC107992092 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.3e-42
Identity = 94/104 (90.38%), Postives = 97/104 (93.27%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 61  RPLSKHKHWVVAEILRKARIYVPQSQHQNQTVSDKSKVPSPSTS 105
           RPLSK KHWVVAEILRKARIY P SQ  NQTVSDKS V +PST+
Sbjct: 61  RPLSKRKHWVVAEILRKARIYEPPSQ-DNQTVSDKSNVSAPSTT 103

[Close]

BLAST of Sed0013564 vs. ExPASy TrEMBL
Match: A0A6J1JP01 (30S ribosomal protein S17, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111486195 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 5.6e-42
Identity = 93/104 (89.42%), Postives = 97/104 (93.27%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 61  RPLSKHKHWVVAEILRKARIYVPQSQHQNQTVSDKSKVPSPSTS 105
           RPLSKHK WVVAEILRKARIY P SQ +NQ VSDK KV +PST+
Sbjct: 61  RPLSKHKRWVVAEILRKARIYEPPSQ-ENQVVSDKGKVSAPSTT 103

[Close]

BLAST of Sed0013564 vs. TAIR 10
Match: AT3G18880.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 143.3 bits (360), Expect = 1.1e-34
Identity = 67/85 (78.82%), Postives = 78/85 (91.76%), Query Frame = 0


Query: 1  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPS 60
          MK V+G VVSNKMQ SVVVAVDRLF++ +YNRYVKRTSKFMAHDE + CNIGD+VKLDPS
Sbjct: 1  MKAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAHDEKDSCNIGDRVKLDPS 60

Query: 61 RPLSKHKHWVVAEILRKARIYVPQS 86
          RPLSKHKHW+V+EI++KARIY PQ+
Sbjct: 61 RPLSKHKHWIVSEIIKKARIYSPQA 85

[Close]

BLAST of Sed0013564 vs. TAIR 10
Match: AT1G49400.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 141.0 bits (354), Expect = 5.5e-34
Identity = 74/116 (63.79%), Postives = 89/116 (76.72%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPS 60
           MK V+G VVSNKMQKSVVVAVDRLF++K+YNRYVKRTSKFMAHD+ + CNIGD+VKLDPS
Sbjct: 1   MKPVIGTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDDKDACNIGDRVKLDPS 60

Query: 61  RPLSKHKHWVVAEILRKARIYVPQ------------SQHQNQTVSDKSKVPSPSTS 105
           RPLSK+KHW+VAEI++KARIY P+            S       S +S++P  STS
Sbjct: 61  RPLSKNKHWIVAEIIKKARIYSPKAAAAAVSASASASSASTTDSSAQSQIPPSSTS 116

[Close]

BLAST of Sed0013564 vs. TAIR 10
Match: AT1G79850.1 (ribosomal protein S17 )

HSP 1 Score: 60.8 bits (146), Expect = 7.3e-10
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPS 60
           MK + G VV     K+V V V RL  H  Y R V+   K+ AHD +NQ  +GD V+L+ S
Sbjct: 50  MKTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKS 109

Query: 61  RPLSKHKHWVVAEILRKA 79
           RP+SK K +V   ++ +A
Sbjct: 110 RPISKTKSFVALPVIARA 127

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BLAST of Sed0013564 vs. TAIR 10
Match: AT4G30800.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 41.2 bits (95), Expect = 6.0e-04
Identity = 26/71 (36.62%), Postives = 38/71 (53.52%), Query Frame = 0


Query: 6   GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAH-DENNQCNIGDKVKLDPSRPLS 65
           G   S KMQ++++V  D L + K Y RY KR S   AH     +   GD+V +   RPLS
Sbjct: 74  GTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKEGDRVTIGQCRPLS 133

Query: 66  KHKHWVVAEIL 76
           K   + V +++
Sbjct: 134 KTVRFNVLKVI 144

The following BLAST results are available for this feature:

BLAST of Sed0013564 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155383.1	5.2e-42	89.42	uncharacterized protein LOC111022528 [Momordica charantia]	[more]
XP_016903240.1	6.7e-42	90.38	PREDICTED: 30S ribosomal protein S17-like [Cucumis melo]	[more]
KAA0041013.1	6.7e-42	90.38	30S ribosomal protein S17-like [Cucumis melo var. makuwa]	[more]
TYK20371.1	6.7e-42	90.38	30S ribosomal protein S17-like [Cucumis melo var. makuwa]	[more]
XP_038891417.1	8.8e-42	89.42	30S ribosomal protein S17-like [Benincasa hispida]	[more]

BLAST of Sed0013564 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B1I1J7	4.0e-21	65.33	30S ribosomal protein S17 OS=Desulforudis audaxviator (strain MP104C) OX=477974 ...	[more]
A7HM43	6.4e-19	55.70	30S ribosomal protein S17 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5...	[more]
Q8R7W3	1.1e-18	58.11	30S ribosomal protein S17 OS=Caldanaerobacter subterraneus subsp. tengcongensis ...	[more]
A8ZV66	1.4e-18	57.14	30S ribosomal protein S17 OS=Desulfococcus oleovorans (strain DSM 6200 / JCM 390...	[more]
Q6LVA7	1.4e-18	52.63	30S ribosomal protein S17 OS=Photobacterium profundum (strain SS9) OX=298386 GN=...	[more]

BLAST of Sed0013564 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DMT5	2.5e-42	89.42	30S ribosomal protein S17, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A5D3D9X1	3.3e-42	90.38	30S ribosomal protein S17, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7TD01	3.3e-42	90.38	30S ribosomal protein S17, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S4E5I9	3.3e-42	90.38	30S ribosomal protein S17, chloroplastic OS=Cucumis melo OX=3656 GN=LOC107992092...	[more]
A0A6J1JP01	5.6e-42	89.42	30S ribosomal protein S17, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]

BLAST of Sed0013564 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18880.1	1.1e-34	78.82	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G49400.1	5.5e-34	63.79	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G79850.1	7.3e-10	42.31	ribosomal protein S17	[more]
AT4G30800.1	6.0e-04	36.62	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000266	Ribosomal protein S17/S11	PRINTS	PR00973	RIBOSOMALS17	coord: 62..69 score: 60.25 coord: 52..62 score: 49.09 coord: 20..43 score: 37.58
IPR000266	Ribosomal protein S17/S11	PFAM	PF00366	Ribosomal_S17	coord: 6..73 e-value: 1.8E-32 score: 111.3
IPR000266	Ribosomal protein S17/S11	PANTHER	PTHR10744	40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER	coord: 1..95
IPR019984	30S ribosomal protein S17	TIGRFAM	TIGR03635	TIGR03635	coord: 2..71 e-value: 1.2E-30 score: 103.4
IPR019984	30S ribosomal protein S17	HAMAP	MF_01345_B	Ribosomal_S17_B	coord: 1..76 score: 22.117825
None	No IPR available	GENE3D	2.40.50.140		coord: 1..99 e-value: 5.0E-34 score: 118.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..104
None	No IPR available	PANTHER	PTHR10744:SF1	37S RIBOSOMAL PROTEIN S17, MITOCHONDRIAL	coord: 1..95
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 2..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013564.1	Sed0013564.1	mRNA
Sed0013564.2	Sed0013564.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome