Sed0012951 (gene) Chayote v1

Overview


Name	Sed0012951
Type	gene
Organism	Sechium edule (Chayote v1)
Description	LOB domain-containing protein
Location	LG05: 39841616 .. 39843428 (-)
RNA-Seq Expression	Sed0012951
Synteny	Sed0012951

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAACTCCAAACCCTCTCTTCATTTCTTCGTTTCGTAAAAAATGGAAGGAAGTGACACAATCACTACCGTTTCATCAACTCCACTCTCTCAATCTTCTTCCTCTTCTTCTTCTCCGGTGCCGGCTCCGGCGCCGGTCGTCATTCTCAGTCCTTGTGCGGCCTGCAAGATTTTGCGCCGGCGATGTGCCGCCGATCGATGTGTTTTGGCGCCATATTTCCCTCCCACCGACCCTGCCAAGTTCGCCATCGCTCATCGCGTTTTTGGCGCTAGCAATATCATCAAGTTCTTGCAGGTCTTTTTCATTCGCCTTTTATGCTCTCTCAATTCGTAATTTCTGTTTTAGTTAAACTTTCAATTGACGATCGGTTTAGTTTGGAGGCTATATCGACGAGTTAGGGCTGAAATTGAAAATAATTGTTAATTGTTGCTACAAATTGTGAATCGCCTAATTGCTTTATCGATTCGTTTTCACGCTGTTCTGTATGTGTTTGTGTGAAATGAAATGTATTCTGAATTCATGATTTCTGTTTTGTTCAACAGTGAATTGACGATTGGTTTGATTGAAGACTGAATCAATTAATTAGGGCTGAAAATACTCTTCCATATGTTGCAGATTATGTGTTAATATCAAAAGTCATTTAAGGAGGCTTTAACATCATTGTCAAAATGGAGGCAATAGGTTTTACACATTAAGAAATTGTTCATTAGGATTGGAGAATGAAGTTTCTCAACTCGTCTTTTTTTTTTTGTTTTTTTGAAAAGTTCTTAAATTGTCTTTTCTCAAGATATTGTTGGAAGATCCGTAAATTAATTGGTTAAGTATTAGCAATATAGGACTTTTCTATCTAATATTTTGTATGATCCTGATTTCTAGCTTTCTCTCTATTATGTCTTTTCAACCACTTAACCTAGTAAACATGTCAATTTATATCTCTATACGTGAACTTTAGATTATGTTTCTATTCATATGCTCAATTTCAGTTGTGAAGGTTTGAATATAATATTATGTTTGATGGATTCCTCTCTGAAATCTAAAACAATATTTCAAAAAAACTTCAAACAGAAAGAGAGAGAGACTGTCACTTCATTTCATTGATGCCCAACTTCTCATTCTTCTCTATTTTGTTGTGAAATGAATCATTTTTGGGGACTCTGAATATTCTGTTTCAAGTGTGGAAGTATGAATATAATATTCTGTTTGGTTGATTCCTATTTGATATCTAAAACAATAGAACAAAACAGAGATTGAGAGGAACTGTCCACTTCCCATTAGGCTTCAATCCATTCCTCTTTTGTTGTTTCTCTCTGTCTGAATTGAATTCTATAGCTAGATTTGTCCATTTTGTTGTGAAATGAAACATTTGTTGGGACTCTGATGACAGGAACTGCCTGAATCTCAAAGGGCGGATGCAGTGAGCAGCTTGGTTTATGAAGCGGGTGCTAGAATCAGGGACCCGGTATACGGGTCGGCAGGGGCGATCTGCGCACTCCAAAAGCAAGTGAACGAGCTTCAAGCGCAGCTAGCGAAGGCCCAGGTCGAGGTGGTGAACATGCAGTGCCAACAGGCCAATCTGGTGGCCTCTGTTTGCAAGGAGTTGGCTCATTCTCATCAGTGTTTTGATGATTTCAATGCCAACCCTCAGAGTGGCTTGCACAGCTTCGCCCAAAGTTACTTTGATGATAGCGATGATTCAAACCCATTGTTGGAGCCTCTCTGGACATGATTTAATCTCACCTTTTTTATTGTTTGTTTTTGTGCCTGTAAGGTCTTCATAAGAAGTTCCAATCAAGTTTCTCCAATCCTTGAGCCCA

mRNA sequence

GCAACTCCAAACCCTCTCTTCATTTCTTCGTTTCGTAAAAAATGGAAGGAAGTGACACAATCACTACCGTTTCATCAACTCCACTCTCTCAATCTTCTTCCTCTTCTTCTTCTCCGGTGCCGGCTCCGGCGCCGGTCGTCATTCTCAGTCCTTGTGCGGCCTGCAAGATTTTGCGCCGGCGATGTGCCGCCGATCGATGTGTTTTGGCGCCATATTTCCCTCCCACCGACCCTGCCAAGTTCGCCATCGCTCATCGCGTTTTTGGCGCTAGCAATATCATCAAGTTCTTGCAGGAACTGCCTGAATCTCAAAGGGCGGATGCAGTGAGCAGCTTGGTTTATGAAGCGGGTGCTAGAATCAGGGACCCGGTATACGGGTCGGCAGGGGCGATCTGCGCACTCCAAAAGCAAGTGAACGAGCTTCAAGCGCAGCTAGCGAAGGCCCAGGTCGAGGTGGTGAACATGCAGTGCCAACAGGCCAATCTGGTGGCCTCTGTTTGCAAGGAGTTGGCTCATTCTCATCAGTGTTTTGATGATTTCAATGCCAACCCTCAGAGTGGCTTGCACAGCTTCGCCCAAAGTTACTTTGATGATAGCGATGATTCAAACCCATTGTTGGAGCCTCTCTGGACATGATTTAATCTCACCTTTTTTATTGTTTGTTTTTGTGCCTGTAAGGTCTTCATAAGAAGTTCCAATCAAGTTTCTCCAATCCTTGAGCCCA

Coding sequence (CDS)

ATGGAAGGAAGTGACACAATCACTACCGTTTCATCAACTCCACTCTCTCAATCTTCTTCCTCTTCTTCTTCTCCGGTGCCGGCTCCGGCGCCGGTCGTCATTCTCAGTCCTTGTGCGGCCTGCAAGATTTTGCGCCGGCGATGTGCCGCCGATCGATGTGTTTTGGCGCCATATTTCCCTCCCACCGACCCTGCCAAGTTCGCCATCGCTCATCGCGTTTTTGGCGCTAGCAATATCATCAAGTTCTTGCAGGAACTGCCTGAATCTCAAAGGGCGGATGCAGTGAGCAGCTTGGTTTATGAAGCGGGTGCTAGAATCAGGGACCCGGTATACGGGTCGGCAGGGGCGATCTGCGCACTCCAAAAGCAAGTGAACGAGCTTCAAGCGCAGCTAGCGAAGGCCCAGGTCGAGGTGGTGAACATGCAGTGCCAACAGGCCAATCTGGTGGCCTCTGTTTGCAAGGAGTTGGCTCATTCTCATCAGTGTTTTGATGATTTCAATGCCAACCCTCAGAGTGGCTTGCACAGCTTCGCCCAAAGTTACTTTGATGATAGCGATGATTCAAACCCATTGTTGGAGCCTCTCTGGACATGA

Protein sequence

MEGSDTITTVSSTPLSQSSSSSSSPVPAPAPVVILSPCAACKILRRRCAADRCVLAPYFPPTDPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEAGARIRDPVYGSAGAICALQKQVNELQAQLAKAQVEVVNMQCQQANLVASVCKELAHSHQCFDDFNANPQSGLHSFAQSYFDDSDDSNPLLEPLWT

Homology

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BLAST of Sed0012951 vs. NCBI nr
Match: XP_038902542.1 (LOB domain-containing protein 1 [Benincasa hispida])

HSP 1 Score: 299.7 bits (766), Expect = 1.9e-77
Identity = 165/198 (83.33%), Postives = 176/198 (88.89%), Query Frame = 0


Query: 1   MEGSDTITTVSSTPLSQSSSSSSSPVPAPAPVVILSPCAACKILRRRCAADRCVLAPYFP 60
           MEGSD++TTVSSTPLSQS SSSSS  P+P PVV LSPCAACKILRRRC A+RCVLAPYFP
Sbjct: 1   MEGSDSVTTVSSTPLSQSPSSSSSLAPSPPPVV-LSPCAACKILRRRC-AERCVLAPYFP 60

Query: 61  PTDPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEAGARIRDPVYGSAGAICAL 120
           PT+PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEA ARIRDPVYGSAGAIC L
Sbjct: 61  PTEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQL 120

Query: 121 QKQVNELQAQLAKAQVEVVNMQCQQANLVASVCKELAHSHQCFDDFNANPQSGL-HSFAQ 180
           QKQVNELQAQLAKAQ EVVNMQCQQANLV+ VC+ELA SHQ FDDFN +P +GL  S + 
Sbjct: 121 QKQVNELQAQLAKAQAEVVNMQCQQANLVSFVCRELAQSHQSFDDFNGSPHNGLFQSISP 180

Query: 181 SYFDDSDDSNPLLEPLWT 198
           SYFDDS + N L EPLWT
Sbjct: 181 SYFDDS-NVNSLWEPLWT 195

[Close]

BLAST of Sed0012951 vs. NCBI nr
Match: XP_008463908.1 (PREDICTED: LOB domain-containing protein 1-like [Cucumis melo] >KAA0035306.1 LOB domain-containing protein 1-like [Cucumis melo var. makuwa] >TYK14330.1 LOB domain-containing protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 298.5 bits (763), Expect = 4.2e-77
Identity = 167/201 (83.08%), Postives = 175/201 (87.06%), Query Frame = 0


Query: 1   MEGSD--TITTVSSTPLSQSSSSSSSPVPAPAPVVILSPCAACKILRRRCAADRCVLAPY 60
           MEGSD  TITTVSSTPLSQS SSSSS  PAP P VILSPCAACKILRRRC A+RCVLAPY
Sbjct: 1   MEGSDSLTITTVSSTPLSQSPSSSSS--PAPPPPVILSPCAACKILRRRC-AERCVLAPY 60

Query: 61  FPPTDPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEAGARIRDPVYGSAGAIC 120
           FPPT+PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEA ARIRDPVYGSAGAIC
Sbjct: 61  FPPTEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAIC 120

Query: 121 ALQKQVNELQAQLAKAQVEVVNMQCQQANLVASVCKELAHSHQCFDDFNANPQSGLHSFA 180
            LQKQVNELQAQLAKAQ EVVNMQCQQANLVA VC+ELA SHQ FD+FN +P +GL    
Sbjct: 121 QLQKQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSFDEFNGSPHNGLLQSI 180

Query: 181 Q--SYFDDSDDSNPLLEPLWT 198
              SYFDDS++ N L EPLWT
Sbjct: 181 NPPSYFDDSNNVNSLWEPLWT 198

[Close]

BLAST of Sed0012951 vs. NCBI nr
Match: XP_022947747.1 (LOB domain-containing protein 1-like [Cucurbita moschata])

HSP 1 Score: 297.0 bits (759), Expect = 1.2e-76
Identity = 161/198 (81.31%), Postives = 173/198 (87.37%), Query Frame = 0


Query: 1   MEGSDTITTVSSTPLSQSSSSSSSPVPAPAPVVILSPCAACKILRRRCAADRCVLAPYFP 60
           MEGSD+ITTVSSTPLSQS SSSSS  PA  P ++LSPCAACKILRRRCA  RCVLAPYFP
Sbjct: 1   MEGSDSITTVSSTPLSQSPSSSSS--PASPPPLVLSPCAACKILRRRCAG-RCVLAPYFP 60

Query: 61  PTDPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEAGARIRDPVYGSAGAICAL 120
           PT+PAKFAIAHRVFGASNIIK LQELPESQRADAVSS+VYEA ARIRDPVYGSAGAIC L
Sbjct: 61  PTEPAKFAIAHRVFGASNIIKCLQELPESQRADAVSSMVYEANARIRDPVYGSAGAICQL 120

Query: 121 QKQVNELQAQLAKAQVEVVNMQCQQANLVASVCKELAHSH-QCFDDFNANPQSGLHSFAQ 180
           QKQVN+LQAQLAKAQ E+VNM+CQQANLVA VC+ELA SH QCFDDFNA+P SG HS  Q
Sbjct: 121 QKQVNDLQAQLAKAQAELVNMECQQANLVAFVCRELAQSHPQCFDDFNASPHSGFHSITQ 180

Query: 181 SYFDDSDDSNPLLEPLWT 198
           + FDD  + N L EPLWT
Sbjct: 181 TNFDDYSNVNQLWEPLWT 195

[Close]

BLAST of Sed0012951 vs. NCBI nr
Match: XP_004149555.1 (LOB domain-containing protein 1 [Cucumis sativus] >KGN47298.1 hypothetical protein Csa_022951 [Cucumis sativus])

HSP 1 Score: 294.7 bits (753), Expect = 6.1e-76
Identity = 167/203 (82.27%), Postives = 176/203 (86.70%), Query Frame = 0


Query: 1   MEGSDTI--TTVSSTPLSQSSSSSSSPVPAPAPVVILSPCAACKILRRRCAADRCVLAPY 60
           MEGSDTI  TTVSSTPLSQS SSSSS  PAP P VILSPCAACKILRRRC A+RCVLAPY
Sbjct: 1   MEGSDTITVTTVSSTPLSQSPSSSSS--PAPPPPVILSPCAACKILRRRC-AERCVLAPY 60

Query: 61  FPPTDPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEAGARIRDPVYGSAGAIC 120
           FPP++PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEA AR+RDPVYGSAGAIC
Sbjct: 61  FPPSEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARVRDPVYGSAGAIC 120

Query: 121 ALQKQVNELQAQLAKAQVEVVNMQCQQANLVASVCKELAHSHQCFDDFNANPQS--GL-- 180
            LQKQVNELQAQLAKAQ EVVNMQCQQANLVA VC+ELA SHQ FD+FN +PQS  GL  
Sbjct: 121 QLQKQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSFDEFNGSPQSHNGLLQ 180

Query: 181 HSFAQSYFDDSDDSNPLLEPLWT 198
                SYFDDS++ N L EPLWT
Sbjct: 181 SIHPPSYFDDSNNVNSLWEPLWT 200

[Close]

BLAST of Sed0012951 vs. NCBI nr
Match: KAG6570762.1 (LOB domain-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010608.1 LOB domain-containing protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 293.5 bits (750), Expect = 1.4e-75
Identity = 165/200 (82.50%), Postives = 174/200 (87.00%), Query Frame = 0


Query: 1   MEGSDTITTVSSTPLSQSSSSSSSPVPAPAPVVILSPCAACKILRRRCAADRCVLAPYFP 60
           MEGSD+I T+SSTP SQS SSSSSP P P P V+LSPCAACKILRRRC A+ CVLAPYFP
Sbjct: 1   MEGSDSIITLSSTPPSQSPSSSSSPAPPPPPPVVLSPCAACKILRRRC-AEGCVLAPYFP 60

Query: 61  PTDPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEAGARIRDPVYGSAGAICAL 120
           PT+PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEA ARIRDPVYGSAGAIC L
Sbjct: 61  PTEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQL 120

Query: 121 QKQVNELQAQLAKAQVEVVNMQCQQANLVASVCKELAHSHQ-CFDDFNANPQSGL-HSFA 180
           QKQVNELQAQLAKAQ EVVNMQCQQANLVA VCKELA SHQ  FDD NA+  SGL HS +
Sbjct: 121 QKQVNELQAQLAKAQAEVVNMQCQQANLVAFVCKELAQSHQSSFDDLNADSHSGLFHSIS 180

Query: 181 Q-SYFDDSDDSNPLLEPLWT 198
             SYFDD+ + NPL EPLWT
Sbjct: 181 SPSYFDDT-NVNPLWEPLWT 198

[Close]

BLAST of Sed0012951 vs. ExPASy Swiss-Prot
Match: Q9LQR0 (LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 7.0e-51
Identity = 120/197 (60.91%), Postives = 146/197 (74.11%), Query Frame = 0


Query: 4   SDTITTVSSTPLSQSSSSSSSPVPAPAPVVILSPCAACKILRRRCAADRCVLAPYFPPTD 63
           S +  +V++TP+    SSSSSP P+ +P V+LSPCAACKILRRRC A+RCVLAPYFPPTD
Sbjct: 3   SKSDASVATTPI---ISSSSSPPPSLSPRVVLSPCAACKILRRRC-AERCVLAPYFPPTD 62

Query: 64  PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEAGARIRDPVYGSAGAICALQKQ 123
           PAKF IAHRVFGASNIIKFLQELPESQR DAV+S+VYEA ARIRDPVYG AGAI  LQ+Q
Sbjct: 63  PAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQ 122

Query: 124 VNELQAQLAKAQVEVVNMQCQQANLVASVCKELAHSHQCFDDFNANPQSGLHSFAQSYFD 183
           V+ELQAQLAKAQVE+VNMQ Q++NL+  +        Q  D+ +        S    + +
Sbjct: 123 VSELQAQLAKAQVEMVNMQFQRSNLLELIYNMDQQQKQEQDNMS------FESNDLGFLE 182

Query: 184 DSDDSNPLL---EPLWT 198
           D  ++N  +   +PLWT
Sbjct: 183 DKSNTNSSMLWWDPLWT 189

[Close]

BLAST of Sed0012951 vs. ExPASy Swiss-Prot
Match: Q9SK08 (LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 SV=2)

HSP 1 Score: 196.8 bits (499), Expect = 2.3e-49
Identity = 117/212 (55.19%), Postives = 146/212 (68.87%), Query Frame = 0


Query: 9   TVSSTPLSQSSSSSSSPVP-----APAPVVILSPCAACKILRRRCAADRCVLAPYFPPTD 68
           T ++TP++  S +SS P P      P P V+LSPCAACKILRRRC AD+CVLAPYFPPTD
Sbjct: 22  TETTTPVNSPSPTSSPPPPPSPQQPPQPPVVLSPCAACKILRRRC-ADKCVLAPYFPPTD 81

Query: 69  PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEAGARIRDPVYGSAGAICALQKQ 128
           PAKF IAHRVFGASNIIKFLQELPESQR DAV+S+VYEAGAR+RDPVYG AGAI  LQ+Q
Sbjct: 82  PAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQ 141

Query: 129 VNELQAQLAKAQVEVVNMQCQQANLVASVCK----------------ELAHSHQCFDDFN 188
           V+ELQAQLAK QVE+V MQ Q+++L+  +                      S +  D+F 
Sbjct: 142 VSELQAQLAKTQVELVGMQLQRSSLLELIYNMEQTKLSVQEQGQQKMSFESSFESGDEFI 201

Query: 189 ANP--QSGLHSFAQSYFDDSDDSNPLLEPLWT 198
           ++P  +S    F +   ++++ S    +PLWT
Sbjct: 202 SSPDEESNDLGFLEDNNNNNNSSMSWWDPLWT 232

[Close]

BLAST of Sed0012951 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 149.4 bits (376), Expect = 4.1e-35
Identity = 75/109 (68.81%), Postives = 88/109 (80.73%), Query Frame = 0


Query: 36  SPCAACKILRRRCAADRCVLAPYFPPTDPAKFAIAHRVFGASNIIKFLQELPESQRADAV 95
           SPCA+CK+LRRRCA D C+ APYFPP DP KFAI H+VFGASN+ K LQELP  QRADAV
Sbjct: 7   SPCASCKLLRRRCAKD-CIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 66

Query: 96  SSLVYEAGARIRDPVYGSAGAICALQKQVNELQAQLAKAQVEVVNMQCQ 145
           +SLV+EA AR+RDPVYG  GAI  LQ QV++LQ QLA AQ E++ +Q Q
Sbjct: 67  NSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ 114

[Close]

BLAST of Sed0012951 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 9.2e-35
Identity = 86/164 (52.44%), Postives = 110/164 (67.07%), Query Frame = 0


Query: 36  SPCAACKILRRRCAADRCVLAPYFPPTDPAKFAIAHRVFGASNIIKFLQELPESQRADAV 95
           SPCAACK+LRRRCA D CV +PYFP  +P KFA  HRVFGASN+ K LQELP  QR DAV
Sbjct: 12  SPCAACKLLRRRCAQD-CVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAV 71

Query: 96  SSLVYEAGARIRDPVYGSAGAICALQKQVNELQAQLAKAQVEVVNMQCQQANLVA--SVC 155
           SS+VYEA AR+RDPVYG  GAI +LQ+Q++ LQAQLA AQ EVV+++ +Q+       +C
Sbjct: 72  SSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTNFPGHGLC 131

Query: 156 KELAHSHQCFDDFNANPQSGLHSFAQSYFDDSDDSNPLLEPLWT 198
            +   S         +PQ     F  S+ D  D+++ L E +W+
Sbjct: 132 PDSPSSSGSPSSKQVSPQDNKGMF--SHMDIVDEAS-LGESMWS 171

[Close]

BLAST of Sed0012951 vs. ExPASy Swiss-Prot
Match: Q9SA51 (LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.1e-31
Identity = 64/108 (59.26%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 35  LSPCAACKILRRRCAADRCVLAPYFPPTDPAKFAIAHRVFGASNIIKFLQELPESQRADA 94
           +SPCA CK+LRR+C  D CV APYFP  +P KFAI H++FGASN+ K LQEL E+ R+DA
Sbjct: 12  VSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDA 71

Query: 95  VSSLVYEAGARIRDPVYGSAGAICALQKQVNELQAQLAKAQVEVVNMQ 143
           V S+VYEA ARI+DPVYG  G I +L +Q+  LQ QLA AQ E+++++
Sbjct: 72  VDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIR 119

[Close]

BLAST of Sed0012951 vs. ExPASy TrEMBL
Match: A0A5D3CSE3 (LOB domain-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00590 PE=3 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 2.0e-77
Identity = 167/201 (83.08%), Postives = 175/201 (87.06%), Query Frame = 0


Query: 1   MEGSD--TITTVSSTPLSQSSSSSSSPVPAPAPVVILSPCAACKILRRRCAADRCVLAPY 60
           MEGSD  TITTVSSTPLSQS SSSSS  PAP P VILSPCAACKILRRRC A+RCVLAPY
Sbjct: 1   MEGSDSLTITTVSSTPLSQSPSSSSS--PAPPPPVILSPCAACKILRRRC-AERCVLAPY 60

Query: 61  FPPTDPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEAGARIRDPVYGSAGAIC 120
           FPPT+PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEA ARIRDPVYGSAGAIC
Sbjct: 61  FPPTEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAIC 120

Query: 121 ALQKQVNELQAQLAKAQVEVVNMQCQQANLVASVCKELAHSHQCFDDFNANPQSGLHSFA 180
            LQKQVNELQAQLAKAQ EVVNMQCQQANLVA VC+ELA SHQ FD+FN +P +GL    
Sbjct: 121 QLQKQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSFDEFNGSPHNGLLQSI 180

Query: 181 Q--SYFDDSDDSNPLLEPLWT 198
              SYFDDS++ N L EPLWT
Sbjct: 181 NPPSYFDDSNNVNSLWEPLWT 198

[Close]

BLAST of Sed0012951 vs. ExPASy TrEMBL
Match: A0A1S3CKA7 (LOB domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501920 PE=3 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 2.0e-77
Identity = 167/201 (83.08%), Postives = 175/201 (87.06%), Query Frame = 0


Query: 1   MEGSD--TITTVSSTPLSQSSSSSSSPVPAPAPVVILSPCAACKILRRRCAADRCVLAPY 60
           MEGSD  TITTVSSTPLSQS SSSSS  PAP P VILSPCAACKILRRRC A+RCVLAPY
Sbjct: 1   MEGSDSLTITTVSSTPLSQSPSSSSS--PAPPPPVILSPCAACKILRRRC-AERCVLAPY 60

Query: 61  FPPTDPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEAGARIRDPVYGSAGAIC 120
           FPPT+PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEA ARIRDPVYGSAGAIC
Sbjct: 61  FPPTEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAIC 120

Query: 121 ALQKQVNELQAQLAKAQVEVVNMQCQQANLVASVCKELAHSHQCFDDFNANPQSGLHSFA 180
            LQKQVNELQAQLAKAQ EVVNMQCQQANLVA VC+ELA SHQ FD+FN +P +GL    
Sbjct: 121 QLQKQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSFDEFNGSPHNGLLQSI 180

Query: 181 Q--SYFDDSDDSNPLLEPLWT 198
              SYFDDS++ N L EPLWT
Sbjct: 181 NPPSYFDDSNNVNSLWEPLWT 198

[Close]

BLAST of Sed0012951 vs. ExPASy TrEMBL
Match: A0A6J1G7A9 (LOB domain-containing protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111451518 PE=3 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 5.9e-77
Identity = 161/198 (81.31%), Postives = 173/198 (87.37%), Query Frame = 0


Query: 1   MEGSDTITTVSSTPLSQSSSSSSSPVPAPAPVVILSPCAACKILRRRCAADRCVLAPYFP 60
           MEGSD+ITTVSSTPLSQS SSSSS  PA  P ++LSPCAACKILRRRCA  RCVLAPYFP
Sbjct: 1   MEGSDSITTVSSTPLSQSPSSSSS--PASPPPLVLSPCAACKILRRRCAG-RCVLAPYFP 60

Query: 61  PTDPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEAGARIRDPVYGSAGAICAL 120
           PT+PAKFAIAHRVFGASNIIK LQELPESQRADAVSS+VYEA ARIRDPVYGSAGAIC L
Sbjct: 61  PTEPAKFAIAHRVFGASNIIKCLQELPESQRADAVSSMVYEANARIRDPVYGSAGAICQL 120

Query: 121 QKQVNELQAQLAKAQVEVVNMQCQQANLVASVCKELAHSH-QCFDDFNANPQSGLHSFAQ 180
           QKQVN+LQAQLAKAQ E+VNM+CQQANLVA VC+ELA SH QCFDDFNA+P SG HS  Q
Sbjct: 121 QKQVNDLQAQLAKAQAELVNMECQQANLVAFVCRELAQSHPQCFDDFNASPHSGFHSITQ 180

Query: 181 SYFDDSDDSNPLLEPLWT 198
           + FDD  + N L EPLWT
Sbjct: 181 TNFDDYSNVNQLWEPLWT 195

[Close]

BLAST of Sed0012951 vs. ExPASy TrEMBL
Match: A0A0A0KCM5 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G290790 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.9e-76
Identity = 167/203 (82.27%), Postives = 176/203 (86.70%), Query Frame = 0


Query: 1   MEGSDTI--TTVSSTPLSQSSSSSSSPVPAPAPVVILSPCAACKILRRRCAADRCVLAPY 60
           MEGSDTI  TTVSSTPLSQS SSSSS  PAP P VILSPCAACKILRRRC A+RCVLAPY
Sbjct: 1   MEGSDTITVTTVSSTPLSQSPSSSSS--PAPPPPVILSPCAACKILRRRC-AERCVLAPY 60

Query: 61  FPPTDPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEAGARIRDPVYGSAGAIC 120
           FPP++PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEA AR+RDPVYGSAGAIC
Sbjct: 61  FPPSEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARVRDPVYGSAGAIC 120

Query: 121 ALQKQVNELQAQLAKAQVEVVNMQCQQANLVASVCKELAHSHQCFDDFNANPQS--GL-- 180
            LQKQVNELQAQLAKAQ EVVNMQCQQANLVA VC+ELA SHQ FD+FN +PQS  GL  
Sbjct: 121 QLQKQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSFDEFNGSPQSHNGLLQ 180

Query: 181 HSFAQSYFDDSDDSNPLLEPLWT 198
                SYFDDS++ N L EPLWT
Sbjct: 181 SIHPPSYFDDSNNVNSLWEPLWT 200

[Close]

BLAST of Sed0012951 vs. ExPASy TrEMBL
Match: A0A6J1CFI2 (LOB domain-containing protein 1 OS=Momordica charantia OX=3673 GN=LOC111011054 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.5e-75
Identity = 162/198 (81.82%), Postives = 170/198 (85.86%), Query Frame = 0


Query: 1   MEGSDTITTVSSTPLSQSSSSSSSPVPAPAPVVILSPCAACKILRRRCAADRCVLAPYFP 60
           MEGSDTIT VSSTPLSQ  S S SP  +  P VILSPCAACKILRRRC ADRCVLAPYFP
Sbjct: 1   MEGSDTITAVSSTPLSQ--SPSPSPSSSSPPSVILSPCAACKILRRRC-ADRCVLAPYFP 60

Query: 61  PTDPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEAGARIRDPVYGSAGAICAL 120
           PTDPAKFAIAHRV+GASNIIKFLQELPESQRADAVSSLVYEA ARIRDPVYGSAGAIC L
Sbjct: 61  PTDPAKFAIAHRVYGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQL 120

Query: 121 QKQVNELQAQLAKAQVEVVNMQCQQANLVASVCKELAHSHQCFDDFNAN-PQSGLHSFAQ 180
           QKQVNELQAQLAKAQ E+VNMQCQQANLVA VC+E A SHQ  DDFN+N P SG  S  Q
Sbjct: 121 QKQVNELQAQLAKAQAELVNMQCQQANLVALVCREFAQSHQSVDDFNSNSPHSGFQSINQ 180

Query: 181 SYFDDSDDSNPLLEPLWT 198
           SYF+D+ + NPL EPLWT
Sbjct: 181 SYFEDT-NVNPLWEPLWT 194

[Close]

BLAST of Sed0012951 vs. TAIR 10
Match: AT1G07900.1 (LOB domain-containing protein 1 )

HSP 1 Score: 201.8 bits (512), Expect = 5.0e-52
Identity = 120/197 (60.91%), Postives = 146/197 (74.11%), Query Frame = 0


Query: 4   SDTITTVSSTPLSQSSSSSSSPVPAPAPVVILSPCAACKILRRRCAADRCVLAPYFPPTD 63
           S +  +V++TP+    SSSSSP P+ +P V+LSPCAACKILRRRC A+RCVLAPYFPPTD
Sbjct: 3   SKSDASVATTPI---ISSSSSPPPSLSPRVVLSPCAACKILRRRC-AERCVLAPYFPPTD 62

Query: 64  PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEAGARIRDPVYGSAGAICALQKQ 123
           PAKF IAHRVFGASNIIKFLQELPESQR DAV+S+VYEA ARIRDPVYG AGAI  LQ+Q
Sbjct: 63  PAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQ 122

Query: 124 VNELQAQLAKAQVEVVNMQCQQANLVASVCKELAHSHQCFDDFNANPQSGLHSFAQSYFD 183
           V+ELQAQLAKAQVE+VNMQ Q++NL+  +        Q  D+ +        S    + +
Sbjct: 123 VSELQAQLAKAQVEMVNMQFQRSNLLELIYNMDQQQKQEQDNMS------FESNDLGFLE 182

Query: 184 DSDDSNPLL---EPLWT 198
           D  ++N  +   +PLWT
Sbjct: 183 DKSNTNSSMLWWDPLWT 189

[Close]

BLAST of Sed0012951 vs. TAIR 10
Match: AT2G28500.1 (LOB domain-containing protein 11 )

HSP 1 Score: 196.8 bits (499), Expect = 1.6e-50
Identity = 117/212 (55.19%), Postives = 146/212 (68.87%), Query Frame = 0


Query: 9   TVSSTPLSQSSSSSSSPVP-----APAPVVILSPCAACKILRRRCAADRCVLAPYFPPTD 68
           T ++TP++  S +SS P P      P P V+LSPCAACKILRRRC AD+CVLAPYFPPTD
Sbjct: 22  TETTTPVNSPSPTSSPPPPPSPQQPPQPPVVLSPCAACKILRRRC-ADKCVLAPYFPPTD 81

Query: 69  PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEAGARIRDPVYGSAGAICALQKQ 128
           PAKF IAHRVFGASNIIKFLQELPESQR DAV+S+VYEAGAR+RDPVYG AGAI  LQ+Q
Sbjct: 82  PAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQ 141

Query: 129 VNELQAQLAKAQVEVVNMQCQQANLVASVCK----------------ELAHSHQCFDDFN 188
           V+ELQAQLAK QVE+V MQ Q+++L+  +                      S +  D+F 
Sbjct: 142 VSELQAQLAKTQVELVGMQLQRSSLLELIYNMEQTKLSVQEQGQQKMSFESSFESGDEFI 201

Query: 189 ANP--QSGLHSFAQSYFDDSDDSNPLLEPLWT 198
           ++P  +S    F +   ++++ S    +PLWT
Sbjct: 202 SSPDEESNDLGFLEDNNNNNNSSMSWWDPLWT 232

[Close]

BLAST of Sed0012951 vs. TAIR 10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 149.4 bits (376), Expect = 2.9e-36
Identity = 75/109 (68.81%), Postives = 88/109 (80.73%), Query Frame = 0


Query: 36  SPCAACKILRRRCAADRCVLAPYFPPTDPAKFAIAHRVFGASNIIKFLQELPESQRADAV 95
           SPCA+CK+LRRRCA D C+ APYFPP DP KFAI H+VFGASN+ K LQELP  QRADAV
Sbjct: 7   SPCASCKLLRRRCAKD-CIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 66

Query: 96  SSLVYEAGARIRDPVYGSAGAICALQKQVNELQAQLAKAQVEVVNMQCQ 145
           +SLV+EA AR+RDPVYG  GAI  LQ QV++LQ QLA AQ E++ +Q Q
Sbjct: 67  NSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ 114

[Close]

BLAST of Sed0012951 vs. TAIR 10
Match: AT1G31320.1 (LOB domain-containing protein 4 )

HSP 1 Score: 148.3 bits (373), Expect = 6.6e-36
Identity = 86/164 (52.44%), Postives = 110/164 (67.07%), Query Frame = 0


Query: 36  SPCAACKILRRRCAADRCVLAPYFPPTDPAKFAIAHRVFGASNIIKFLQELPESQRADAV 95
           SPCAACK+LRRRCA D CV +PYFP  +P KFA  HRVFGASN+ K LQELP  QR DAV
Sbjct: 12  SPCAACKLLRRRCAQD-CVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAV 71

Query: 96  SSLVYEAGARIRDPVYGSAGAICALQKQVNELQAQLAKAQVEVVNMQCQQANLVA--SVC 155
           SS+VYEA AR+RDPVYG  GAI +LQ+Q++ LQAQLA AQ EVV+++ +Q+       +C
Sbjct: 72  SSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTNFPGHGLC 131

Query: 156 KELAHSHQCFDDFNANPQSGLHSFAQSYFDDSDDSNPLLEPLWT 198
            +   S         +PQ     F  S+ D  D+++ L E +W+
Sbjct: 132 PDSPSSSGSPSSKQVSPQDNKGMF--SHMDIVDEAS-LGESMWS 171

[Close]

BLAST of Sed0012951 vs. TAIR 10
Match: AT1G16530.1 (ASYMMETRIC LEAVES 2-like 9 )

HSP 1 Score: 137.1 bits (344), Expect = 1.5e-32
Identity = 64/108 (59.26%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 35  LSPCAACKILRRRCAADRCVLAPYFPPTDPAKFAIAHRVFGASNIIKFLQELPESQRADA 94
           +SPCA CK+LRR+C  D CV APYFP  +P KFAI H++FGASN+ K LQEL E+ R+DA
Sbjct: 12  VSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDA 71

Query: 95  VSSLVYEAGARIRDPVYGSAGAICALQKQVNELQAQLAKAQVEVVNMQ 143
           V S+VYEA ARI+DPVYG  G I +L +Q+  LQ QLA AQ E+++++
Sbjct: 72  VDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIR 119

The following BLAST results are available for this feature:

BLAST of Sed0012951 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902542.1	1.9e-77	83.33	LOB domain-containing protein 1 [Benincasa hispida]	[more]
XP_008463908.1	4.2e-77	83.08	PREDICTED: LOB domain-containing protein 1-like [Cucumis melo] >KAA0035306.1 LOB...	[more]
XP_022947747.1	1.2e-76	81.31	LOB domain-containing protein 1-like [Cucurbita moschata]	[more]
XP_004149555.1	6.1e-76	82.27	LOB domain-containing protein 1 [Cucumis sativus] >KGN47298.1 hypothetical prote...	[more]
KAG6570762.1	1.4e-75	82.50	LOB domain-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia]...	[more]

BLAST of Sed0012951 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LQR0	7.0e-51	60.91	LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=...	[more]
Q9SK08	2.3e-49	55.19	LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 S...	[more]
Q8LBW3	4.1e-35	68.81	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
Q9SHE9	9.2e-35	52.44	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
Q9SA51	2.1e-31	59.26	LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=...	[more]

BLAST of Sed0012951 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CSE3	2.0e-77	83.08	LOB domain-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3CKA7	2.0e-77	83.08	LOB domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501920 PE=...	[more]
A0A6J1G7A9	5.9e-77	81.31	LOB domain-containing protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1114515...	[more]
A0A0A0KCM5	2.9e-76	82.27	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G290790 PE=3 SV...	[more]
A0A6J1CFI2	1.5e-75	81.82	LOB domain-containing protein 1 OS=Momordica charantia OX=3673 GN=LOC111011054 P...	[more]

BLAST of Sed0012951 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07900.1	5.0e-52	60.91	LOB domain-containing protein 1	[more]
AT2G28500.1	1.6e-50	55.19	LOB domain-containing protein 11	[more]
AT2G30130.1	2.9e-36	68.81	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G31320.1	6.6e-36	52.44	LOB domain-containing protein 4	[more]
AT1G16530.1	1.5e-32	59.26	ASYMMETRIC LEAVES 2-like 9	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 117..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR31301:SF141	LOB DOMAIN-CONTAINING PROTEIN 1-LIKE	coord: 13..191
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 13..191
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 37..135 e-value: 5.0E-39 score: 132.9
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 36..138 score: 23.206312

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0012951.1	Sed0012951.1	mRNA