Sed0012934 (gene) Chayote v1

Overview
NameSed0012934
Typegene
OrganismSechium edule (Chayote v1)
DescriptionType B response regulator
LocationLG07: 3846419 .. 3847263 (+)
RNA-Seq ExpressionSed0012934
SyntenySed0012934
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCGCCATATGCGTTCAATGTTCTTGTAGTCGACAAGGATGAGAATATCAGGGAAGAAGTGCAGAGTATTCTCTTGAGCACCAACCTATATCGAGGTATGTGTTGATCTTTTCTTTCAAAAACTCTACATATATAGGTATGCTACTACTTAACTCGGATTTTATGGGTTTTGCAAATATAATTTGAGCAATCTCAATCTGTTGTGGATTGCTGGCAGAGAGTGATTGCAAAGCTTAGACTAGATCTTTTACGAGACACCTTAATTTGTTTTCTAAAAAATCTTCAAGTGAGTGGAGGAGACCTCACGAATACAATCGATGGAGGACGAGTTCAAACTAGTGTTGCAGCAGCGGAAGGTCAAGGCCGCAGGGATGTTGGAGCGGATCTTACCTTGGCCATCGTAGATGCAGAGTCTACTAAGCGGTTTACTTGGACTCCAGAATATCATACTATATTTCTCGAGGCCTATCACGCCTTTCCTCTCAATGGTAATGTATATATATAATTTTTTATTATTTTATTCATTTTAGTATTCCTAACTTTATAATATAATGTCCATTTAGAACAAAACCCTAGCAATATCCTAGAATATATGGTGAATCGTGGCATCAACGGTCTTACGCGTGATATTGTTAAGAACTACCTCCAGGTATTTTCAATTTGTAAACCTTTATTTCTAAAATACTATCAATAAATTAACTATTTCCTTTTTCTTTTGTGCAGAAACACAAAAGAAGAGTCAAAGCTGAAGCTGAAGCTGCTAGAAAAATACTCAACCACGCAATTGACCTCACGGCAGAAGGGAATGACACCATGGAGGCAAGGAGATCAATGATGTAG

mRNA sequence

ATGGCTTCGCCATATGCGTTCAATGTTCTTGTAGTCGACAAGGATGAGAATATCAGGGAAGAAGTGCAGAGTATTCTCTTGAGCACCAACCTATATCGAGTGAGTGGAGGAGACCTCACGAATACAATCGATGGAGGACGAGTTCAAACTAGTGTTGCAGCAGCGGAAGGTCAAGGCCGCAGGGATGTTGGAGCGGATCTTACCTTGGCCATCGTAGATGCAGAGTCTACTAAGCGGTTTACTTGGACTCCAGAATATCATACTATATTTCTCGAGGCCTATCACGCCTTTCCTCTCAATGAACAAAACCCTAGCAATATCCTAGAATATATGGTGAATCGTGGCATCAACGGTCTTACGCGTGATATTGTTAAGAACTACCTCCAGAAACACAAAAGAAGAGTCAAAGCTGAAGCTGAAGCTGCTAGAAAAATACTCAACCACGCAATTGACCTCACGGCAGAAGGGAATGACACCATGGAGGCAAGGAGATCAATGATGTAG

Coding sequence (CDS)

ATGGCTTCGCCATATGCGTTCAATGTTCTTGTAGTCGACAAGGATGAGAATATCAGGGAAGAAGTGCAGAGTATTCTCTTGAGCACCAACCTATATCGAGTGAGTGGAGGAGACCTCACGAATACAATCGATGGAGGACGAGTTCAAACTAGTGTTGCAGCAGCGGAAGGTCAAGGCCGCAGGGATGTTGGAGCGGATCTTACCTTGGCCATCGTAGATGCAGAGTCTACTAAGCGGTTTACTTGGACTCCAGAATATCATACTATATTTCTCGAGGCCTATCACGCCTTTCCTCTCAATGAACAAAACCCTAGCAATATCCTAGAATATATGGTGAATCGTGGCATCAACGGTCTTACGCGTGATATTGTTAAGAACTACCTCCAGAAACACAAAAGAAGAGTCAAAGCTGAAGCTGAAGCTGCTAGAAAAATACTCAACCACGCAATTGACCTCACGGCAGAAGGGAATGACACCATGGAGGCAAGGAGATCAATGATGTAG

Protein sequence

MASPYAFNVLVVDKDENIREEVQSILLSTNLYRVSGGDLTNTIDGGRVQTSVAAAEGQGRRDVGADLTLAIVDAESTKRFTWTPEYHTIFLEAYHAFPLNEQNPSNILEYMVNRGINGLTRDIVKNYLQKHKRRVKAEAEAARKILNHAIDLTAEGNDTMEARRSMM
Homology
BLAST of Sed0012934 vs. NCBI nr
Match: KAA0046668.1 (type B response regulator [Cucumis melo var. makuwa] >TYK18203.1 type B response regulator [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 3.6e-05
Identity = 45/138 (32.61%), Postives = 62/138 (44.93%), Query Frame = 0

Query: 27  LSTNLYRVSGGDLTNTIDGGRVQTSVAAAEGQGRRDVGADLTLAIVDAESTKRFTWTPEY 86
           L  ++ R  GG   +T DGG +         Q R  +G   T          RF WTPE 
Sbjct: 45  LGGSITRELGG--PSTADGGEINYFDVDEALQERTGIGPRRT----------RFIWTPEC 104

Query: 87  HTIFLEAYHAFPLNEQNPSNILEYMVNRGINGLTRDIVKNYLQKHKRRVK---AEAEAAR 146
           H IF+EA +   L    P  ILEYM N G+  +TR IV ++LQK++  +K    E + A 
Sbjct: 105 HQIFVEAVNTLTLQRAVPRKILEYMRNCGVQNITRAIVASHLQKYRLGLKKGHVEVDKAS 164

Query: 147 KILNHAIDLTAEGNDTME 162
           ++    I   A      E
Sbjct: 165 QVPFRTISFNATNGRNQE 170

BLAST of Sed0012934 vs. ExPASy TrEMBL
Match: A0A5D3D1X5 (Type B response regulator OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001420 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.8e-05
Identity = 45/138 (32.61%), Postives = 62/138 (44.93%), Query Frame = 0

Query: 27  LSTNLYRVSGGDLTNTIDGGRVQTSVAAAEGQGRRDVGADLTLAIVDAESTKRFTWTPEY 86
           L  ++ R  GG   +T DGG +         Q R  +G   T          RF WTPE 
Sbjct: 45  LGGSITRELGG--PSTADGGEINYFDVDEALQERTGIGPRRT----------RFIWTPEC 104

Query: 87  HTIFLEAYHAFPLNEQNPSNILEYMVNRGINGLTRDIVKNYLQKHKRRVK---AEAEAAR 146
           H IF+EA +   L    P  ILEYM N G+  +TR IV ++LQK++  +K    E + A 
Sbjct: 105 HQIFVEAVNTLTLQRAVPRKILEYMRNCGVQNITRAIVASHLQKYRLGLKKGHVEVDKAS 164

Query: 147 KILNHAIDLTAEGNDTME 162
           ++    I   A      E
Sbjct: 165 QVPFRTISFNATNGRNQE 170

BLAST of Sed0012934 vs. ExPASy TrEMBL
Match: A0A0A0KB26 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G405920 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-04
Identity = 26/51 (50.98%), Postives = 32/51 (62.75%), Query Frame = 0

Query: 79  RFTWTPEYHTIFLEAYHAFPLNEQNPSNILEYMVNRGINGLTRDIVKNYLQ 130
           RF WT EYH IF+EA     L    P  ILEYM+N G+  +TR IV ++LQ
Sbjct: 86  RFIWTDEYHRIFVEAVDRLTLQRAVPRKILEYMINCGVQNITRAIVASHLQ 136

BLAST of Sed0012934 vs. ExPASy TrEMBL
Match: A0A7J7CBY8 (Putative Response regulator 2 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW18G00375 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 5.7e-04
Identity = 31/76 (40.79%), Postives = 45/76 (59.21%), Query Frame = 0

Query: 69  LAIVDAESTKRFTWTPEYHTIFLEAYHAFPLNEQNPSNILEYMVNRGINGLTRDIVKNYL 128
           LAIV++  T    WT E H  FLEA +   ++  +P NILEYM    + GLTR+ + ++L
Sbjct: 158 LAIVESWET---VWTSELHDKFLEAVNLLGIDNAHPKNILEYM---NVQGLTRENISSHL 217

Query: 129 QKHKRRVKAEAEAARK 145
           QKH  ++K E    +K
Sbjct: 218 QKHYIKLKKEQACIQK 227

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0046668.13.6e-0532.61type B response regulator [Cucumis melo var. makuwa] >TYK18203.1 type B response... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3D1X51.8e-0532.61Type B response regulator OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A0A0KB261.5e-0450.98Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G405920 PE=3 SV=1[more]
A0A7J7CBY85.7e-0440.79Putative Response regulator 2 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW18G... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.10.60coord: 77..136
e-value: 4.7E-13
score: 51.1
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 77..136

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0012934.1Sed0012934.1mRNA