Sed0012917 (gene) Chayote v1

Overview


Name	Sed0012917
Type	gene
Organism	Sechium edule (Chayote v1)
Description	binding partner of ACD11 1-like
Location	LG04: 7490696 .. 7493703 (+)
RNA-Seq Expression	Sed0012917
Synteny	Sed0012917

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCATAGCCATTTTTCTTTCATCACAGAATCTCAAATTCAAAATCAAAATCTCCGTTCAGATTCGTCTAGGTTTCCGTTTTCCGGCGATCTCCGGTTGATTCCGTCCCATTCCGGCGATTTCACCTTCGTCATTTCCAGAGATGTCGGTTCGTACTTCCTGAAAATTTTTCCCTCTTCTTTTCGCTGTGTTTGAAATGGTTAGGTCAAGATTTCTTTAGGTTAGAGTTGAAGTTGTGTTTTGTGGATTTTGATTCGGGTTATGAAGAATTACCGCAATGTTCGGCGAAGGGATTTAGATCTCTTGTGGTTTCTGTTTCTGTTTCTGTTTCTGTTTGACTTTCCCATTTAGGGTTTTTGCGTTTGGTTAAGATTTTCCCAATCTGTGTGCAAGAATCAAGATTACTTTTCAAGCAAATGAGTCTATTTCTATGTTTTGACTGATGAAATTGAAATGTATTGTTCTGAGTTTGTGCTATGTTTGTTCCTCGCACTGAATCTGGAGCTGAAATGCGTTTGGATCACAAGTGCTTCTTGGCTTGTTGATTTTCATCGTTTTCTCCGCCGCACCAATGGAATTTTTCTTTTGGGTTTTCATTCTTTCTGCCCTTTTGGACATCACGGCTCAGTTGTAGCAATGGATTTATGCAATTTATTTTGAGATAGTGAGAGTTTTCTTGATCTTTGACTGAAGTGCTTGTTTTGCATATAATAGAAACTGTTAAATTCTGTATGCAGGTTAAGACTATTAAAGTCAGCAATGTCTCCTTGGGAGCATCTGAACGAGATATCAAGGAGTTCTTTTCATTTTCTGGTGACATTCAATATCTGGAAATGCAGAGGTTTGTGTATGATTTTTAATTCGGTTTCTGATTCAATTAATTTTTTTTTCATTTAATTTTAGGCGAATACCGAGTTATTGTTTTTGTACAGTGAAAGTGAGCGGTCTCAAATTGCTTATGTGACCTTCGAGGATGCACAAGGAGCAGAGACTGCCATGCTTCTGTCTGTAAGTTCACTTTATAGGCAATGTCTATAGATCATAGTAATTATAAAAGGTTTGTTACCTTCCTATAAACTAAGTAAATAGAAGTTCTATATCCCATTGGCATTAAAAATATAACTCTTGAAGATTCAATTATTCGTGGAGGTGTTAGTTAGTCAAAGTATGGTTGGCAATATACTTTACTAGTGTTCTTTGCTGTTAATAGTGGGCATATAGCCTTGTCTAGGGAGAGGATGATGCTTTAACCTGGTATTTATTTCTATGAAGAAATTAGTCAGGGCCTTTGCATTTCATCTTCTATTTTCTTTCCCTAAATCTTACATCATATCCACCTTCATTGATTTTTCACTAAGAAAAAGGAATCTTGCTTCCATTTTATGATCATGATTTATGATCTGGGGTAGCGTTTTGCCCCTTAATGACTTAAATGGTGTAAAGGAGGATGTGACCTTTGGTGCTAATAGCAGGAGGTCAATTTTAGGCTTGATTGCTCTTCTGTAATTTGACTGTTTAAGAGGTAGATCTTAGCTGGAAGCCTGGAAGTTTGTTCTACGTTGATCAAATTTGTCGCTAGGATATATTTTGTTATCTATATTTTCCTGTACATTTAAAACTTGTTATACACATTAGCTATCAAGAACCAGCAATATTTTTATCACCTGAGCTGGTTAGATTAATGGATCTCAACTTTTTGTTAGGGAGCAACTATAGTGGATCTTTCTGTCAATATCACTCTGTGTCCCGAGTATGAGCTCCCTCCTGAAGCTACTGCACCACCCCCTGTAAGATTCTTGGGAGTGTTTTCTCCTTTCTTGCTTTAGTTTTGTGTGTGAGCCTCTGTCACTTTATATGTTTTCCTTAGTTGGCTAGCGTATTTGTTGTAGGCCCCAGGAGCTAAAGCACCTGGTACTAATGAATCCGCCTTTAGGAAAGCAGAGGATGTAGTTAGTGGTATACTTGCCAAGGGAGTTCTCTTGGGTAAAGAGGCAGTAAACTCAGCAAAGGCATTTGATGAGAAACACCAGTTATCTTCTACGGCCTCAGCCAAAGTTGCTACATTCGATAAAAAAGTTGGGCTAACCGAGAAAATTAGTGCTGGCACATCATTGGTGAGTGGCAAAGTTCGAGAAGTTGACCAGAAGTTTCAGGTTTCGGAGAAGACTAAATCAGCATTTGCAGTTGCAGAGGAAAAAGTCAGCAATGCTGGATCTGCCATTATGAAAAACCGAATTGTAATGAGCGGGACTAGCTGGGTTGCTGATACTTTCAGTAAGGTAGCCAAGGCAGCTGGAGAAGTTGGTCAGAAAACAAAAGAGAAGGTTGTGGTGTCCGAAGAAGAACAGAGAAAGAAGACGGTCGAAGATTTTGCTAAGGTTCATCTCTCGGAATCCCCTAAAGCAGCATCAGCACCCCCTGAGCCTCAGCAACGTCCCAAACCCGAACCAGCTCAAGGTCTGATTCTCTGAATTGTTGTCATGTTTGTTGATATCTATGTCTGAAAGCTCTTGTAGTTGTAATGTGTACTTCTCCTTCATTTCTGGCATGGTGCTGGTTATATTTTAGGGTAAAGATATAGAATAGATTTTTCCTCAATTTAGTTGTGGAATTTGATTGCATAAGATATCTTCATTTGACAGAATACAAAAACAGCAGGTTTTTCCATATTGAGAACAAATTCTGCTCTTTCTACCATGCTATGTTGTTGTATCAATGCATTTCTGGGCTAGTTTTTGAAGTTCAGAGATTTATTTATTATGTGGTTTTAATTTTCTTTTACAAAACTTAGTTCTCTGGAGAGATGTTGGTTGACCATTTTTAAGCATTAGTGTAGGTGTCTCTCTATCAGCGGTAAGTTCGAATCTCCTCTCTATTGTACATACAATTTAGGCCCTCTGATTTAAACGTTGTCCATTTTGTACATACAATTTAGCCCCCTGATTTTAACATTTTCCATTTTGTGCATACAATTTAGTCCCTCTTGTACATACAACTTAGTCCTTCCGA

mRNA sequence

GCCATAGCCATTTTTCTTTCATCACAGAATCTCAAATTCAAAATCAAAATCTCCGTTCAGATTCGTCTAGGTTTCCGTTTTCCGGCGATCTCCGGTTGATTCCGTCCCATTCCGGCGATTTCACCTTCGTCATTTCCAGAGATGTCGGTTAAGACTATTAAAGTCAGCAATGTCTCCTTGGGAGCATCTGAACGAGATATCAAGGAGTTCTTTTCATTTTCTGGTGACATTCAATATCTGGAAATGCAGAGTGAAAGTGAGCGGTCTCAAATTGCTTATGTGACCTTCGAGGATGCACAAGGAGCAGAGACTGCCATGCTTCTGTCTGGAGCAACTATAGTGGATCTTTCTGTCAATATCACTCTGTGTCCCGAGTATGAGCTCCCTCCTGAAGCTACTGCACCACCCCCTGCCCCAGGAGCTAAAGCACCTGGTACTAATGAATCCGCCTTTAGGAAAGCAGAGGATGTAGTTAGTGGTATACTTGCCAAGGGAGTTCTCTTGGGTAAAGAGGCAGTAAACTCAGCAAAGGCATTTGATGAGAAACACCAGTTATCTTCTACGGCCTCAGCCAAAGTTGCTACATTCGATAAAAAAGTTGGGCTAACCGAGAAAATTAGTGCTGGCACATCATTGGTGAGTGGCAAAGTTCGAGAAGTTGACCAGAAGTTTCAGGTTTCGGAGAAGACTAAATCAGCATTTGCAGTTGCAGAGGAAAAAGTCAGCAATGCTGGATCTGCCATTATGAAAAACCGAATTGTAATGAGCGGGACTAGCTGGGTTGCTGATACTTTCAGTAAGGTAGCCAAGGCAGCTGGAGAAGTTGGTCAGAAAACAAAAGAGAAGGTTGTGGTGTCCGAAGAAGAACAGAGAAAGAAGACGGTCGAAGATTTTGCTAAGGTTCATCTCTCGGAATCCCCTAAAGCAGCATCAGCACCCCCTGAGCCTCAGCAACGTCCCAAACCCGAACCAGCTCAAGGTCTGATTCTCTGAATTGTTGTCATGTTTGTTGATATCTATGTCTGAAAGCTCTTGTAGTTGTAATGTGTACTTCTCCTTCATTTCTGGCATGGTGCTGGTTATATTTTAGGGTAAAGATATAGAATAGATTTTTCCTCAATTTAGTTGTGGAATTTGATTGCATAAGATATCTTCATTTGACAGAATACAAAAACAGCAGGTTTTTCCATATTGAGAACAAATTCTGCTCTTTCTACCATGCTATGTTGTTGTATCAATGCATTTCTGGGCTAGTTTTTGAAGTTCAGAGATTTATTTATTATGTGGTTTTAATTTTCTTTTACAAAACTTAGTTCTCTGGAGAGATGTTGGTTGACCATTTTTAAGCATTAGTGTAGGTGTCTCTCTATCAGCGGTAAGTTCGAATCTCCTCTCTATTGTACATACAATTTAGGCCCTCTGATTTAAACGTTGTCCATTTTGTACATACAATTTAGCCCCCTGATTTTAACATTTTCCATTTTGTGCATACAATTTAGTCCCTCTTGTACATACAACTTAGTCCTTCCGA

Coding sequence (CDS)

ATGTCGGTTAAGACTATTAAAGTCAGCAATGTCTCCTTGGGAGCATCTGAACGAGATATCAAGGAGTTCTTTTCATTTTCTGGTGACATTCAATATCTGGAAATGCAGAGTGAAAGTGAGCGGTCTCAAATTGCTTATGTGACCTTCGAGGATGCACAAGGAGCAGAGACTGCCATGCTTCTGTCTGGAGCAACTATAGTGGATCTTTCTGTCAATATCACTCTGTGTCCCGAGTATGAGCTCCCTCCTGAAGCTACTGCACCACCCCCTGCCCCAGGAGCTAAAGCACCTGGTACTAATGAATCCGCCTTTAGGAAAGCAGAGGATGTAGTTAGTGGTATACTTGCCAAGGGAGTTCTCTTGGGTAAAGAGGCAGTAAACTCAGCAAAGGCATTTGATGAGAAACACCAGTTATCTTCTACGGCCTCAGCCAAAGTTGCTACATTCGATAAAAAAGTTGGGCTAACCGAGAAAATTAGTGCTGGCACATCATTGGTGAGTGGCAAAGTTCGAGAAGTTGACCAGAAGTTTCAGGTTTCGGAGAAGACTAAATCAGCATTTGCAGTTGCAGAGGAAAAAGTCAGCAATGCTGGATCTGCCATTATGAAAAACCGAATTGTAATGAGCGGGACTAGCTGGGTTGCTGATACTTTCAGTAAGGTAGCCAAGGCAGCTGGAGAAGTTGGTCAGAAAACAAAAGAGAAGGTTGTGGTGTCCGAAGAAGAACAGAGAAAGAAGACGGTCGAAGATTTTGCTAAGGTTCATCTCTCGGAATCCCCTAAAGCAGCATCAGCACCCCCTGAGCCTCAGCAACGTCCCAAACCCGAACCAGCTCAAGGTCTGATTCTCTGA

Protein sequence

MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTNESAFRKAEDVVSGILAKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSEKTKSAFAVAEEKVSNAGSAIMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSEEEQRKKTVEDFAKVHLSESPKAASAPPEPQQRPKPEPAQGLIL

Homology

[Close]

BLAST of Sed0012917 vs. NCBI nr
Match: XP_038906357.1 (binding partner of ACD11 1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 476.1 bits (1224), Expect = 2.1e-130
Identity = 259/284 (91.20%), Postives = 272/284 (95.77%), Query Frame = 0


Query: 1   MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAML 60
           MS+KT+KVSNVSLGASERDIKEFFSFSGDI+YLEMQSESERSQIAYVTF+D QGAETA+L
Sbjct: 1   MSIKTVKVSNVSLGASERDIKEFFSFSGDIEYLEMQSESERSQIAYVTFKDTQGAETAVL 60

Query: 61  LSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTNESAFRKAEDVVSGILAKGVL 120
           LSGATIVDLSVNITLCP+YELPPEATAPPPAPG KAPG  ESAFRKAEDVVSG+LAKG +
Sbjct: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKAPGAAESAFRKAEDVVSGMLAKGFI 120

Query: 121 LGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVS 180
           LGK+A+NSAKAFDEKHQLSSTASAKVAT DKK+G TEKISAGT LVS KVREVDQKFQVS
Sbjct: 121 LGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKISAGTLLVSDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSNAGSAIMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSE 240
           EKTKSAFAVAEEKVSNAGSAIMKNR VMSGTSWVAD F+KVAKAAGEVGQKTKEKVVVSE
Sbjct: 181 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADAFNKVAKAAGEVGQKTKEKVVVSE 240

Query: 241 EEQRKKTVEDFAKVHLSESPKAASAPP-EPQQRPKPEPAQGLIL 284
           EEQ+KKTVEDFAKVHLSESPKAASAPP EPQQRPKPEPAQGLIL
Sbjct: 241 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

[Close]

BLAST of Sed0012917 vs. NCBI nr
Match: XP_038906358.1 (binding partner of ACD11 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 474.6 bits (1220), Expect = 6.2e-130
Identity = 258/284 (90.85%), Postives = 271/284 (95.42%), Query Frame = 0


Query: 1   MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAML 60
           M +KT+KVSNVSLGASERDIKEFFSFSGDI+YLEMQSESERSQIAYVTF+D QGAETA+L
Sbjct: 1   MQIKTVKVSNVSLGASERDIKEFFSFSGDIEYLEMQSESERSQIAYVTFKDTQGAETAVL 60

Query: 61  LSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTNESAFRKAEDVVSGILAKGVL 120
           LSGATIVDLSVNITLCP+YELPPEATAPPPAPG KAPG  ESAFRKAEDVVSG+LAKG +
Sbjct: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKAPGAAESAFRKAEDVVSGMLAKGFI 120

Query: 121 LGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVS 180
           LGK+A+NSAKAFDEKHQLSSTASAKVAT DKK+G TEKISAGT LVS KVREVDQKFQVS
Sbjct: 121 LGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKISAGTLLVSDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSNAGSAIMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSE 240
           EKTKSAFAVAEEKVSNAGSAIMKNR VMSGTSWVAD F+KVAKAAGEVGQKTKEKVVVSE
Sbjct: 181 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADAFNKVAKAAGEVGQKTKEKVVVSE 240

Query: 241 EEQRKKTVEDFAKVHLSESPKAASAPP-EPQQRPKPEPAQGLIL 284
           EEQ+KKTVEDFAKVHLSESPKAASAPP EPQQRPKPEPAQGLIL
Sbjct: 241 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

[Close]

BLAST of Sed0012917 vs. NCBI nr
Match: XP_008448657.1 (PREDICTED: binding partner of ACD11 1 isoform X1 [Cucumis melo])

HSP 1 Score: 474.6 bits (1220), Expect = 6.2e-130
Identity = 257/284 (90.49%), Postives = 273/284 (96.13%), Query Frame = 0


Query: 1   MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAML 60
           MS+KT+KVSNVSLGASERDIKEFFSFSGDI+YLEMQSE+ERSQ AYVTF+DAQGAETA+L
Sbjct: 1   MSIKTVKVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 60

Query: 61  LSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTNESAFRKAEDVVSGILAKGVL 120
           LSGATIVDLSVNITLCP+YELPPEATAPPPAPG K PG  ESAFRKAEDVVSG+LAKG +
Sbjct: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI 120

Query: 121 LGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVS 180
           LGK+A+NSAKAFDEKHQL+STASAKVAT DKK+G TEKISAGTSLVS KVREVDQKFQVS
Sbjct: 121 LGKDALNSAKAFDEKHQLTSTASAKVATLDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSNAGSAIMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSE 240
           EKTKSAFAVAEEKVSNAGSAIMKNR VMSGTSWVADTF+KVAKAAGEVGQKTKEKVVV+E
Sbjct: 181 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNKVAKAAGEVGQKTKEKVVVTE 240

Query: 241 EEQRKKTVEDFAKVHLSESPKAASAPP-EPQQRPKPEPAQGLIL 284
           EEQ+KKTVEDFAKVHLSESPKAASAPP EPQQRPKPEPAQGLIL
Sbjct: 241 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

[Close]

BLAST of Sed0012917 vs. NCBI nr
Match: XP_004148750.1 (binding partner of ACD11 1 isoform X1 [Cucumis sativus] >KGN55732.1 hypothetical protein Csa_011420 [Cucumis sativus])

HSP 1 Score: 474.2 bits (1219), Expect = 8.0e-130
Identity = 256/284 (90.14%), Postives = 274/284 (96.48%), Query Frame = 0


Query: 1   MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAML 60
           MS+KT++VSNVSLGASERDIKEFFSFSGDI+YLEMQSE+ERSQ AYVTF+DAQGAETA+L
Sbjct: 1   MSIKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 60

Query: 61  LSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTNESAFRKAEDVVSGILAKGVL 120
           LSGATIVDLSVNITLCP+YELPPEATAPPPAPG K PG  ESAFRKAEDVVSG+LAKG +
Sbjct: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI 120

Query: 121 LGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVS 180
           LGK+A+NSAKAFDEKHQL+STASAKVATFDKK+G TEKISAGTSLVS KVREVDQKFQVS
Sbjct: 121 LGKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSNAGSAIMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSE 240
           EKTKSAFAVAEEKVSNAGSAIMKNR VMSGTSWVADTF++VAKAAGEVGQKTKEKVVV+E
Sbjct: 181 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVVVTE 240

Query: 241 EEQRKKTVEDFAKVHLSESPKAASAPP-EPQQRPKPEPAQGLIL 284
           EEQ+KKTVEDFAKVHLSESPKAASAPP EPQQRPKPEPAQGLIL
Sbjct: 241 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

[Close]

BLAST of Sed0012917 vs. NCBI nr
Match: XP_008448658.1 (PREDICTED: binding partner of ACD11 1 isoform X2 [Cucumis melo])

HSP 1 Score: 473.0 bits (1216), Expect = 1.8e-129
Identity = 256/284 (90.14%), Postives = 272/284 (95.77%), Query Frame = 0


Query: 1   MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAML 60
           M +KT+KVSNVSLGASERDIKEFFSFSGDI+YLEMQSE+ERSQ AYVTF+DAQGAETA+L
Sbjct: 1   MQIKTVKVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 60

Query: 61  LSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTNESAFRKAEDVVSGILAKGVL 120
           LSGATIVDLSVNITLCP+YELPPEATAPPPAPG K PG  ESAFRKAEDVVSG+LAKG +
Sbjct: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI 120

Query: 121 LGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVS 180
           LGK+A+NSAKAFDEKHQL+STASAKVAT DKK+G TEKISAGTSLVS KVREVDQKFQVS
Sbjct: 121 LGKDALNSAKAFDEKHQLTSTASAKVATLDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSNAGSAIMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSE 240
           EKTKSAFAVAEEKVSNAGSAIMKNR VMSGTSWVADTF+KVAKAAGEVGQKTKEKVVV+E
Sbjct: 181 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNKVAKAAGEVGQKTKEKVVVTE 240

Query: 241 EEQRKKTVEDFAKVHLSESPKAASAPP-EPQQRPKPEPAQGLIL 284
           EEQ+KKTVEDFAKVHLSESPKAASAPP EPQQRPKPEPAQGLIL
Sbjct: 241 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

[Close]

BLAST of Sed0012917 vs. ExPASy Swiss-Prot
Match: Q9LFD5 (Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 3.2e-65
Identity = 145/264 (54.92%), Postives = 198/264 (75.00%), Query Frame = 0


Query: 3   VKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLS 62
           V+++KV N+S GA+E DIKEFFSFSG+++ +++QS +E S  AYVTF++ QGAETA+LLS
Sbjct: 5   VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQS-NEHS--AYVTFKETQGAETAVLLS 64

Query: 63  GATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTN-ESAFRKAEDVVSGILAKGVLL 122
           GA+I D SV I L P Y       +PP AP A+   +  ES  +KAEDVVS +LAKG +L
Sbjct: 65  GASIADQSVIIELAPNY-------SPPAAPHAETQSSGAESVVQKAEDVVSSMLAKGFIL 124

Query: 123 GKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSE 182
           GK+AV  AKAFDEKH  +STA+A VA+ D+K+GL++K++AGTSLV+ K++ VDQ FQV+E
Sbjct: 125 GKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNFQVTE 184

Query: 183 KTKSAFAVAEEKVSNAGSAIMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSEE 242
           +TKS +A AE+ VS+AGSA+MKNR V++G SW A  F++VA+AAGEVGQKTKEKV   + 
Sbjct: 185 RTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEKVEAEQP 244

Query: 243 EQ----RKKTVEDFAKVHLSESPK 262
            Q    +++  E ++ +H SE  K
Sbjct: 245 SQPAQSQQQLPEGYSPIHSSEYSK 258

[Close]

BLAST of Sed0012917 vs. ExPASy Swiss-Prot
Match: P87216 (Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=vip1 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 9.3e-04
Identity = 47/181 (25.97%), Postives = 78/181 (43.09%), Query Frame = 0


Query: 8   VSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLSGATIV 67
           V+N+S   +E+ I +FFSF G +  +  +   E +Q A + FE     +TA+LL  A + 
Sbjct: 7   VTNISPEVTEKQISDFFSFCGKVSNISTEKSGE-TQTAKIQFERPSATKTALLLQDALLG 66

Query: 68  DLSVNITLCPEYELPPEATAPPPAPGAKAPGTNESAFRKAEDVVSGILAKGVLLGKEAVN 127
              + IT     +    +T      G       E   R A  ++S +L++G  L    + 
Sbjct: 67  QNKIQIT---SEDGGAASTTDQGGAGGDQAARQEDKPRSA--IISELLSRGYHLSDVTLE 126

Query: 128 SAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSL------VSGKVREVDQKFQVSE 183
            +   D+ + +SS          K  G+ E   +G         V+ K  EVD KF +S+
Sbjct: 127 KSIQLDQSYGVSS----------KFKGILESALSGVRSVNERYHVTEKANEVDNKFAISD 171

[Close]

BLAST of Sed0012917 vs. ExPASy TrEMBL
Match: A0A1S3BK81 (binding partner of ACD11 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490760 PE=4 SV=1)

HSP 1 Score: 474.6 bits (1220), Expect = 3.0e-130
Identity = 257/284 (90.49%), Postives = 273/284 (96.13%), Query Frame = 0


Query: 1   MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAML 60
           MS+KT+KVSNVSLGASERDIKEFFSFSGDI+YLEMQSE+ERSQ AYVTF+DAQGAETA+L
Sbjct: 1   MSIKTVKVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 60

Query: 61  LSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTNESAFRKAEDVVSGILAKGVL 120
           LSGATIVDLSVNITLCP+YELPPEATAPPPAPG K PG  ESAFRKAEDVVSG+LAKG +
Sbjct: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI 120

Query: 121 LGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVS 180
           LGK+A+NSAKAFDEKHQL+STASAKVAT DKK+G TEKISAGTSLVS KVREVDQKFQVS
Sbjct: 121 LGKDALNSAKAFDEKHQLTSTASAKVATLDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSNAGSAIMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSE 240
           EKTKSAFAVAEEKVSNAGSAIMKNR VMSGTSWVADTF+KVAKAAGEVGQKTKEKVVV+E
Sbjct: 181 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNKVAKAAGEVGQKTKEKVVVTE 240

Query: 241 EEQRKKTVEDFAKVHLSESPKAASAPP-EPQQRPKPEPAQGLIL 284
           EEQ+KKTVEDFAKVHLSESPKAASAPP EPQQRPKPEPAQGLIL
Sbjct: 241 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

[Close]

BLAST of Sed0012917 vs. ExPASy TrEMBL
Match: A0A0A0L545 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G008890 PE=4 SV=1)

HSP 1 Score: 474.2 bits (1219), Expect = 3.9e-130
Identity = 256/284 (90.14%), Postives = 274/284 (96.48%), Query Frame = 0


Query: 1   MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAML 60
           MS+KT++VSNVSLGASERDIKEFFSFSGDI+YLEMQSE+ERSQ AYVTF+DAQGAETA+L
Sbjct: 1   MSIKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 60

Query: 61  LSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTNESAFRKAEDVVSGILAKGVL 120
           LSGATIVDLSVNITLCP+YELPPEATAPPPAPG K PG  ESAFRKAEDVVSG+LAKG +
Sbjct: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI 120

Query: 121 LGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVS 180
           LGK+A+NSAKAFDEKHQL+STASAKVATFDKK+G TEKISAGTSLVS KVREVDQKFQVS
Sbjct: 121 LGKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSNAGSAIMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSE 240
           EKTKSAFAVAEEKVSNAGSAIMKNR VMSGTSWVADTF++VAKAAGEVGQKTKEKVVV+E
Sbjct: 181 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVVVTE 240

Query: 241 EEQRKKTVEDFAKVHLSESPKAASAPP-EPQQRPKPEPAQGLIL 284
           EEQ+KKTVEDFAKVHLSESPKAASAPP EPQQRPKPEPAQGLIL
Sbjct: 241 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

[Close]

BLAST of Sed0012917 vs. ExPASy TrEMBL
Match: A0A5A7UH68 (Binding partner of ACD11 1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001410 PE=4 SV=1)

HSP 1 Score: 473.0 bits (1216), Expect = 8.7e-130
Identity = 256/284 (90.14%), Postives = 272/284 (95.77%), Query Frame = 0


Query: 1   MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAML 60
           M +KT+KVSNVSLGASERDIKEFFSFSGDI+YLEMQSE+ERSQ AYVTF+DAQGAETA+L
Sbjct: 92  MQIKTVKVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 151

Query: 61  LSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTNESAFRKAEDVVSGILAKGVL 120
           LSGATIVDLSVNITLCP+YELPPEATAPPPAPG K PG  ESAFRKAEDVVSG+LAKG +
Sbjct: 152 LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI 211

Query: 121 LGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVS 180
           LGK+A+NSAKAFDEKHQL+STASAKVAT DKK+G TEKISAGTSLVS KVREVDQKFQVS
Sbjct: 212 LGKDALNSAKAFDEKHQLTSTASAKVATLDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 271

Query: 181 EKTKSAFAVAEEKVSNAGSAIMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSE 240
           EKTKSAFAVAEEKVSNAGSAIMKNR VMSGTSWVADTF+KVAKAAGEVGQKTKEKVVV+E
Sbjct: 272 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNKVAKAAGEVGQKTKEKVVVTE 331

Query: 241 EEQRKKTVEDFAKVHLSESPKAASAPP-EPQQRPKPEPAQGLIL 284
           EEQ+KKTVEDFAKVHLSESPKAASAPP EPQQRPKPEPAQGLIL
Sbjct: 332 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 375

[Close]

BLAST of Sed0012917 vs. ExPASy TrEMBL
Match: A0A1S3BK74 (binding partner of ACD11 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490760 PE=4 SV=1)

HSP 1 Score: 473.0 bits (1216), Expect = 8.7e-130
Identity = 256/284 (90.14%), Postives = 272/284 (95.77%), Query Frame = 0


Query: 1   MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAML 60
           M +KT+KVSNVSLGASERDIKEFFSFSGDI+YLEMQSE+ERSQ AYVTF+DAQGAETA+L
Sbjct: 1   MQIKTVKVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 60

Query: 61  LSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTNESAFRKAEDVVSGILAKGVL 120
           LSGATIVDLSVNITLCP+YELPPEATAPPPAPG K PG  ESAFRKAEDVVSG+LAKG +
Sbjct: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI 120

Query: 121 LGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVS 180
           LGK+A+NSAKAFDEKHQL+STASAKVAT DKK+G TEKISAGTSLVS KVREVDQKFQVS
Sbjct: 121 LGKDALNSAKAFDEKHQLTSTASAKVATLDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSNAGSAIMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSE 240
           EKTKSAFAVAEEKVSNAGSAIMKNR VMSGTSWVADTF+KVAKAAGEVGQKTKEKVVV+E
Sbjct: 181 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNKVAKAAGEVGQKTKEKVVVTE 240

Query: 241 EEQRKKTVEDFAKVHLSESPKAASAPP-EPQQRPKPEPAQGLIL 284
           EEQ+KKTVEDFAKVHLSESPKAASAPP EPQQRPKPEPAQGLIL
Sbjct: 241 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

[Close]

BLAST of Sed0012917 vs. ExPASy TrEMBL
Match: A0A6J1CV14 (binding partner of ACD11 1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111014836 PE=4 SV=1)

HSP 1 Score: 460.7 bits (1184), Expect = 4.5e-126
Identity = 248/283 (87.63%), Postives = 266/283 (93.99%), Query Frame = 0


Query: 1   MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAML 60
           MS+KT+KVSNVSLGAS+RD+KEFFSFSGDI+YLEMQSESERSQ AYVTF+DAQGAETA+L
Sbjct: 1   MSIKTVKVSNVSLGASDRDVKEFFSFSGDIEYLEMQSESERSQTAYVTFKDAQGAETAVL 60

Query: 61  LSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTNESAFRKAEDVVSGILAKGVL 120
           LSGATIVDLSVNITLCP+YELPPEATAPP A G  APG  ESAF+KAEDVVSG+LAKG +
Sbjct: 61  LSGATIVDLSVNITLCPDYELPPEATAPPAATGTTAPGAAESAFQKAEDVVSGMLAKGFI 120

Query: 121 LGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVS 180
           LGK+A+NSAKAFDEKHQLSSTASAKVATFDKK+G TEKISAGT LVS KVREVDQKFQVS
Sbjct: 121 LGKDALNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTLLVSDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSNAGSAIMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSE 240
           EKTKSAFAVAE KVSNAGSAIM NR VMSGTSWVAD F+KVAKAAGEVGQKTKEK V SE
Sbjct: 181 EKTKSAFAVAEVKVSNAGSAIMNNRFVMSGTSWVADAFNKVAKAAGEVGQKTKEKFVASE 240

Query: 241 EEQRKKTVEDFAKVHLSESPKAASAPPEPQQRPKPEPAQGLIL 284
           EEQ+KKTVEDFA+VHLSESPKAA+APPEPQQRPKPEPAQGLIL
Sbjct: 241 EEQKKKTVEDFAQVHLSESPKAATAPPEPQQRPKPEPAQGLIL 283

[Close]

BLAST of Sed0012917 vs. TAIR 10
Match: AT4G17720.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 329.3 bits (843), Expect = 3.0e-90
Identity = 180/275 (65.45%), Postives = 226/275 (82.18%), Query Frame = 0


Query: 1   MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAML 60
           M++ T+KVSNVSLGA++RD+KEFFSFSGDI YLE QSE+ER+++AYVTF+D QGAETA+L
Sbjct: 1   MTMTTVKVSNVSLGATDRDLKEFFSFSGDILYLETQSETERTKLAYVTFKDLQGAETAVL 60

Query: 61  LSGATIVDLSVNITLCPEYELPPEATAP-PPAPGAKAPGTNESAFRKAEDVVSGILAKGV 120
           LSGATIVD SV +++ P+Y+L PEA A   P    K+P   +S  RKAEDVVS +LAKG 
Sbjct: 61  LSGATIVDSSVIVSMAPDYQLSPEALASLEPKDSNKSPKAGDSVLRKAEDVVSSMLAKGF 120

Query: 121 LLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQV 180
           +LGK+A+  AK+ DEKHQL+STASAKVA+FDKK+G T+KI+ GT +V  KVREVDQK+QV
Sbjct: 121 ILGKDAIAKAKSVDEKHQLTSTASAKVASFDKKIGFTDKINTGTVVVGEKVREVDQKYQV 180

Query: 181 SEKTKSAFAVAEEKVSNAGSAIMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVS 240
           SEKTKSA A AE+ VSNAGSAIMKNR V++G +WV   F+KVAKAA EVGQK KEKV ++
Sbjct: 181 SEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNKVAKAAEEVGQKAKEKVGMA 240

Query: 241 EEEQRKKTVEDFAKVHLSESPKAASAPPEPQQRPK 275
           EEE ++K V++FA+VHLSESPKAAS+  E ++  K
Sbjct: 241 EEEDKRKVVDEFARVHLSESPKAASSTQEAERESK 275

[Close]

BLAST of Sed0012917 vs. TAIR 10
Match: AT5G46870.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 302.0 bits (772), Expect = 5.1e-82
Identity = 173/289 (59.86%), Postives = 227/289 (78.55%), Query Frame = 0


Query: 1   MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAML 60
           MS+ T+KVSNVSL A+ERD+KEFFSFSGDI YLE QSE++ S++AYVTF+D QGAETA+L
Sbjct: 1   MSMVTVKVSNVSLEATERDLKEFFSFSGDIAYLETQSENDGSKLAYVTFKDLQGAETAVL 60

Query: 61  LSGATIVDLSVNITLCPEYELPPEATAP----PPAPGAKAPGTNE-SAFRKAEDVVSGIL 120
           L+G+TIVD SV +T+ P+Y+LPP+A A       +  + +P   + S FRKAEDVVSG++
Sbjct: 61  LTGSTIVDSSVTVTMSPDYQLPPDALASIESLKESNKSSSPTREDVSVFRKAEDVVSGMI 120

Query: 121 AKGVLLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQ 180
           +KG +LGK+A+  AK+ DEKHQL+STASA+V +FDK++G TEKI+ GT++VS KV+EVDQ
Sbjct: 121 SKGFVLGKDAIAKAKSLDEKHQLTSTASARVTSFDKRIGFTEKINTGTTVVSEKVKEVDQ 180

Query: 181 KFQVSEKTKSAFAVAEEKVSNAGSAIMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEK 240
           KFQV+EKTKSA A AE+ VSNAGSAIMKNR V++G +WV   F++V+KAA EVGQK KEK
Sbjct: 181 KFQVTEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNRVSKAAEEVGQKAKEK 240

Query: 241 VVVS--EEEQRKKTVEDFAKVHLSESPKAA------SAPPEPQQRPKPE 277
           V ++  EEE++KK V++ A VHL+ESPKA       S  PE + +P  E
Sbjct: 241 VGLAEEEEEEKKKVVDEVAIVHLTESPKALDQSEQDSKLPESKSQPHKE 289

[Close]

BLAST of Sed0012917 vs. TAIR 10
Match: AT5G16840.2 (binding partner of acd11 1 )

HSP 1 Score: 254.2 bits (648), Expect = 1.2e-67
Identity = 145/264 (54.92%), Postives = 198/264 (75.00%), Query Frame = 0


Query: 3   VKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLS 62
           V+++KV N+S GA+E DIKEFFSFSG+++ +++QS +E S  AYVTF++ QGAETA+LLS
Sbjct: 5   VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSSNEHS--AYVTFKETQGAETAVLLS 64

Query: 63  GATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTN-ESAFRKAEDVVSGILAKGVLL 122
           GA+I D SV I L P Y       +PP AP A+   +  ES  +KAEDVVS +LAKG +L
Sbjct: 65  GASIADQSVIIELAPNY-------SPPAAPHAETQSSGAESVVQKAEDVVSSMLAKGFIL 124

Query: 123 GKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSE 182
           GK+AV  AKAFDEKH  +STA+A VA+ D+K+GL++K++AGTSLV+ K++ VDQ FQV+E
Sbjct: 125 GKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNFQVTE 184

Query: 183 KTKSAFAVAEEKVSNAGSAIMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSEE 242
           +TKS +A AE+ VS+AGSA+MKNR V++G SW A  F++VA+AAGEVGQKTKEKV   + 
Sbjct: 185 RTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEKVEAEQP 244

Query: 243 EQ----RKKTVEDFAKVHLSESPK 262
            Q    +++  E ++ +H SE  K
Sbjct: 245 SQPAQSQQQLPEGYSPIHSSEYSK 259

[Close]

BLAST of Sed0012917 vs. TAIR 10
Match: AT5G16840.3 (binding partner of acd11 1 )

HSP 1 Score: 251.9 bits (642), Expect = 6.0e-67
Identity = 146/266 (54.89%), Postives = 200/266 (75.19%), Query Frame = 0


Query: 1   MSVKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAML 60
           M+V+++KV N+S GA+E DIKEFFSFSG+++ +++QS +E S  AYVTF++ QGAETA+L
Sbjct: 1   MAVRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQS-NEHS--AYVTFKETQGAETAVL 60

Query: 61  LSGATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTN-ESAFRKAEDVVSGILAKGV 120
           LSGA+I D SV I L P Y       +PP AP A+   +  ES  +KAEDVVS +LAKG 
Sbjct: 61  LSGASIADQSVIIELAPNY-------SPPAAPHAETQSSGAESVVQKAEDVVSSMLAKGF 120

Query: 121 LLGKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQV 180
           +LGK+AV  AKAFDEKH  +STA+A VA+ D+K+GL++K++AGTSLV+ K++ VDQ FQV
Sbjct: 121 ILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNFQV 180

Query: 181 SEKTKSAFAVAEEKVSNAGSAIMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVS 240
           +E+TKS +A AE+ VS+AGSA+MKNR V++G SW A  F++VA+AAGEVGQKTKEKV   
Sbjct: 181 TERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEKVEAE 240

Query: 241 EEEQ----RKKTVEDFAKVHLSESPK 262
           +  Q    +++  E ++ +H SE  K
Sbjct: 241 QPSQPAQSQQQLPEGYSPIHSSEYSK 256

[Close]

BLAST of Sed0012917 vs. TAIR 10
Match: AT5G16840.1 (binding partner of acd11 1 )

HSP 1 Score: 250.0 bits (637), Expect = 2.3e-66
Identity = 145/264 (54.92%), Postives = 198/264 (75.00%), Query Frame = 0


Query: 3   VKTIKVSNVSLGASERDIKEFFSFSGDIQYLEMQSESERSQIAYVTFEDAQGAETAMLLS 62
           V+++KV N+S GA+E DIKEFFSFSG+++ +++QS +E S  AYVTF++ QGAETA+LLS
Sbjct: 5   VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQS-NEHS--AYVTFKETQGAETAVLLS 64

Query: 63  GATIVDLSVNITLCPEYELPPEATAPPPAPGAKAPGTN-ESAFRKAEDVVSGILAKGVLL 122
           GA+I D SV I L P Y       +PP AP A+   +  ES  +KAEDVVS +LAKG +L
Sbjct: 65  GASIADQSVIIELAPNY-------SPPAAPHAETQSSGAESVVQKAEDVVSSMLAKGFIL 124

Query: 123 GKEAVNSAKAFDEKHQLSSTASAKVATFDKKVGLTEKISAGTSLVSGKVREVDQKFQVSE 182
           GK+AV  AKAFDEKH  +STA+A VA+ D+K+GL++K++AGTSLV+ K++ VDQ FQV+E
Sbjct: 125 GKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNFQVTE 184

Query: 183 KTKSAFAVAEEKVSNAGSAIMKNRIVMSGTSWVADTFSKVAKAAGEVGQKTKEKVVVSEE 242
           +TKS +A AE+ VS+AGSA+MKNR V++G SW A  F++VA+AAGEVGQKTKEKV   + 
Sbjct: 185 RTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEKVEAEQP 244

Query: 243 EQ----RKKTVEDFAKVHLSESPK 262
            Q    +++  E ++ +H SE  K
Sbjct: 245 SQPAQSQQQLPEGYSPIHSSEYSK 258

The following BLAST results are available for this feature:

BLAST of Sed0012917 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906357.1	2.1e-130	91.20	binding partner of ACD11 1-like isoform X1 [Benincasa hispida]	[more]
XP_038906358.1	6.2e-130	90.85	binding partner of ACD11 1-like isoform X2 [Benincasa hispida]	[more]
XP_008448657.1	6.2e-130	90.49	PREDICTED: binding partner of ACD11 1 isoform X1 [Cucumis melo]	[more]
XP_004148750.1	8.0e-130	90.14	binding partner of ACD11 1 isoform X1 [Cucumis sativus] >KGN55732.1 hypothetical...	[more]
XP_008448658.1	1.8e-129	90.14	PREDICTED: binding partner of ACD11 1 isoform X2 [Cucumis melo]	[more]

BLAST of Sed0012917 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LFD5	3.2e-65	54.92	Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1	[more]
P87216	9.3e-04	25.97	Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN...	[more]

BLAST of Sed0012917 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BK81	3.0e-130	90.49	binding partner of ACD11 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490760 PE...	[more]
A0A0A0L545	3.9e-130	90.14	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G008890 PE=4 SV...	[more]
A0A5A7UH68	8.7e-130	90.14	Binding partner of ACD11 1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3BK74	8.7e-130	90.14	binding partner of ACD11 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490760 PE...	[more]
A0A6J1CV14	4.5e-126	87.63	binding partner of ACD11 1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC...	[more]

BLAST of Sed0012917 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17720.1	3.0e-90	65.45	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G46870.1	5.1e-82	59.86	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G16840.2	1.2e-67	54.92	binding partner of acd11 1	[more]
AT5G16840.3	6.0e-67	54.89	binding partner of acd11 1	[more]
AT5G16840.1	2.3e-66	54.92	binding partner of acd11 1	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 5..74 e-value: 6.2E-7 score: 39.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 7..65 e-value: 2.6E-6 score: 27.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 4..78 score: 10.701297
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..74 e-value: 4.6E-9 score: 38.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 253..283
None	No IPR available	PANTHER	PTHR32343:SF37	BINDING PARTNER OF ACD11 1	coord: 1..263
None	No IPR available	PANTHER	PTHR32343	SERINE/ARGININE-RICH SPLICING FACTOR	coord: 1..263
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 3..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0012917.1	Sed0012917.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding