Sed0012910 (gene) Chayote v1

Overview


Name	Sed0012910
Type	gene
Organism	Sechium edule (Chayote v1)
Description	root phototropism protein 3-like
Location	LG13: 2437533 .. 2438374 (+)
RNA-Seq Expression	Sed0012910
Synteny	Sed0012910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGTTGCAAGGCTTGTTGATAGTTATCTAACAGAGGTGGCCAAAGAGAGAAACCTTTCCTTGACAAAATTTCAAGTACTAGCTGAAGCTCTGCCTCAATAGAGCCATTGATTCCTATATGCTGATTGGTGATTTAACATGATTCAACATGGTATTAGGGCAGGAGGTCCTGGATTTGAATGCTTGTGAAGTCATTTCCTTCCCAATTAATATTAGTTTTTAATGGTCCGATATTTCTCAAATTTTCAACTCGGTGATTCAACATGATTCAACAAACTTAAAAAGTTATTTTTCCATAAAGTAGTTTCACAAATTCATTTAAGAGGAAAGAGTTTGCACATTAAATCCTCTTCTTTGTTAGTTTCCCACTTCTCCAAAACATCACACACCATAGAATCTTGGCTCTCACAATCCCAAAATTGAAGTGTTCTCTAAGTGAACTAATGATGACAATTTACAGGCATGCCCTACACCAGCCGAGCACGAGAGGAAGCGACTATGGCGAGTAATGGACAGCCAGAAGATCTCCAACGGCGCGTGTATGCATGCAGCACAAAATGAAAGGCTGCCATGACGAGTGGTGGTTCGAAGTCCTCTTCTCCGAGCAAGTAAAGATAAGCAATACAATTGCCAACTCGTCGCTGAAAGAAGCAAACTATTCGCAACTCCAACCGCTCGCAAGGAACCAAAAAACACTCTTGGAAGCTACGCCGCAGTCGCTCCAAGAAGGATGGGCAAGTGCCAAGAAAGACATCAACACATTGAAATTTGAGCATGAGAGTGTGAAAACAAAGTATCTTGAGCTTCAAAGTGAAATGGAGAACTTACAGACAGTTTGA

mRNA sequence

ATGAGTGTTGCAAGGCTTGTTGATAGTTATCTAACAGAGGTGGCCAAAGAGAGAAACCTTTCCTTGACAAAATTTCAAGCATGCCCTACACCAGCCGAGCACGAGAGGAAGCGACTATGGCGAGTAATGGACAGCCAGAAGATCTCCAACGGCGCGTTCCTCTTCTCCGAGCAAGTAAAGATAAGCAATACAATTGCCAACTCGTCGCTGAAAGAAGCAAACTATTCGCAACTCCAACCGCTCGCAAGGAACCAAAAAACACTCTTGGAAGCTACGCCGCAGTCGCTCCAAGAAGGATGGGCAAGTGCCAAGAAAGACATCAACACATTGAAATTTGAGCATGAGAGTGTGAAAACAAAGTATCTTGAGCTTCAAAGTGAAATGGAGAACTTACAGACAGTTTGA

Coding sequence (CDS)

ATGAGTGTTGCAAGGCTTGTTGATAGTTATCTAACAGAGGTGGCCAAAGAGAGAAACCTTTCCTTGACAAAATTTCAAGCATGCCCTACACCAGCCGAGCACGAGAGGAAGCGACTATGGCGAGTAATGGACAGCCAGAAGATCTCCAACGGCGCGTTCCTCTTCTCCGAGCAAGTAAAGATAAGCAATACAATTGCCAACTCGTCGCTGAAAGAAGCAAACTATTCGCAACTCCAACCGCTCGCAAGGAACCAAAAAACACTCTTGGAAGCTACGCCGCAGTCGCTCCAAGAAGGATGGGCAAGTGCCAAGAAAGACATCAACACATTGAAATTTGAGCATGAGAGTGTGAAAACAAAGTATCTTGAGCTTCAAAGTGAAATGGAGAACTTACAGACAGTTTGA

Protein sequence

MSVARLVDSYLTEVAKERNLSLTKFQACPTPAEHERKRLWRVMDSQKISNGAFLFSEQVKISNTIANSSLKEANYSQLQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQTV

Homology

[Close]

BLAST of Sed0012910 vs. NCBI nr
Match: XP_022149130.1 (root phototropism protein 3-like [Momordica charantia])

HSP 1 Score: 176.0 bits (445), Expect = 2.1e-40
Identity = 109/175 (62.29%), Postives = 117/175 (66.86%), Query Frame = 0


Query: 1   MSVARLVDSYLTEVAKERNLSLTKFQ--------------------------ACPTPAEH 60
           M VARLVDSYLTEVA++RNLSLTKFQ                          A PT  EH
Sbjct: 442 MRVARLVDSYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKAHPTLTEH 501

Query: 61  ERKRLWRVMDSQKISNGA-----------------FLFSEQVKISNTIANSSLKEANYSQ 120
           ERKRL RVMD QK+S  A                  LFSEQVKISNTIANSSLKEA+ SQ
Sbjct: 502 ERKRLCRVMDCQKLSIDACMHAAQNERLPLRVVVQVLFSEQVKISNTIANSSLKEASDSQ 561

Query: 121 LQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ 133
            QPL  N+KTLLEATPQS QEGWA+AKKDINTLKFE ESVKTKYLELQ+EME+LQ
Sbjct: 562 FQPLVTNRKTLLEATPQSFQEGWATAKKDINTLKFELESVKTKYLELQTEMESLQ 616

[Close]

BLAST of Sed0012910 vs. NCBI nr
Match: XP_016902943.1 (PREDICTED: root phototropism protein 3 [Cucumis melo] >KAA0056629.1 root phototropism protein 3 [Cucumis melo var. makuwa] >TYK07556.1 root phototropism protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 174.9 bits (442), Expect = 4.8e-40
Identity = 108/175 (61.71%), Postives = 116/175 (66.29%), Query Frame = 0


Query: 1   MSVARLVDSYLTEVAKERNLSLTKFQ--------------------------ACPTPAEH 60
           M VARLVDSYLTEVA++RNLSLTKFQ                          A PT  EH
Sbjct: 442 MRVARLVDSYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKAHPTLTEH 501

Query: 61  ERKRLWRVMDSQKISNGA-----------------FLFSEQVKISNTIANSSLKEANYSQ 120
           ERKRL RVMD QK+S  A                  LFSEQVKISN IANSSLKEAN SQ
Sbjct: 502 ERKRLCRVMDCQKLSIDACMHAAQNERLPLRVVVQVLFSEQVKISNAIANSSLKEANDSQ 561

Query: 121 LQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ 133
            QPL  N+KTLLEATPQS QEGWA+AKKDINTLKFE ES+KTKYLELQ+EME+LQ
Sbjct: 562 FQPLVTNRKTLLEATPQSFQEGWATAKKDINTLKFELESMKTKYLELQTEMESLQ 616

[Close]

BLAST of Sed0012910 vs. NCBI nr
Match: XP_031740285.1 (root phototropism protein 3 isoform X2 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 4.8e-40
Identity = 108/175 (61.71%), Postives = 116/175 (66.29%), Query Frame = 0


Query: 1   MSVARLVDSYLTEVAKERNLSLTKFQ--------------------------ACPTPAEH 60
           M VARLVDSYLTEVA++RNLSLTKFQ                          A PT  EH
Sbjct: 381 MRVARLVDSYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKAHPTLTEH 440

Query: 61  ERKRLWRVMDSQKISNGA-----------------FLFSEQVKISNTIANSSLKEANYSQ 120
           ERKRL RVMD QK+S  A                  LFSEQVKISN IANSSLKEAN SQ
Sbjct: 441 ERKRLCRVMDCQKLSIDACMHAAQNERLPLRVVVQVLFSEQVKISNAIANSSLKEANDSQ 500

Query: 121 LQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ 133
            QPL  N+KTLLEATPQS QEGWA+AKKDINTLKFE ES+KTKYLELQ+EME+LQ
Sbjct: 501 FQPLVTNRKTLLEATPQSFQEGWATAKKDINTLKFELESMKTKYLELQTEMESLQ 555

[Close]

BLAST of Sed0012910 vs. NCBI nr
Match: XP_004137156.1 (root phototropism protein 3 isoform X1 [Cucumis sativus] >KGN53732.1 hypothetical protein Csa_014472 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 4.8e-40
Identity = 108/175 (61.71%), Postives = 116/175 (66.29%), Query Frame = 0


Query: 1   MSVARLVDSYLTEVAKERNLSLTKFQ--------------------------ACPTPAEH 60
           M VARLVDSYLTEVA++RNLSLTKFQ                          A PT  EH
Sbjct: 442 MRVARLVDSYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKAHPTLTEH 501

Query: 61  ERKRLWRVMDSQKISNGA-----------------FLFSEQVKISNTIANSSLKEANYSQ 120
           ERKRL RVMD QK+S  A                  LFSEQVKISN IANSSLKEAN SQ
Sbjct: 502 ERKRLCRVMDCQKLSIDACMHAAQNERLPLRVVVQVLFSEQVKISNAIANSSLKEANDSQ 561

Query: 121 LQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ 133
            QPL  N+KTLLEATPQS QEGWA+AKKDINTLKFE ES+KTKYLELQ+EME+LQ
Sbjct: 562 FQPLVTNRKTLLEATPQSFQEGWATAKKDINTLKFELESMKTKYLELQTEMESLQ 616

[Close]

BLAST of Sed0012910 vs. NCBI nr
Match: XP_038905136.1 (root phototropism protein 3-like isoform X1 [Benincasa hispida])

HSP 1 Score: 174.1 bits (440), Expect = 8.1e-40
Identity = 108/175 (61.71%), Postives = 116/175 (66.29%), Query Frame = 0


Query: 1   MSVARLVDSYLTEVAKERNLSLTKFQ--------------------------ACPTPAEH 60
           M VARLVDSYLTEVA++RNLSLTKFQ                          A PT  EH
Sbjct: 442 MRVARLVDSYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKAHPTLTEH 501

Query: 61  ERKRLWRVMDSQKISNGA-----------------FLFSEQVKISNTIANSSLKEANYSQ 120
           ERKRL RVMD QK+S  A                  LFSEQVKISN IANSSLKEA+ SQ
Sbjct: 502 ERKRLCRVMDCQKLSIDACMHAAQNERLPLRVVVQVLFSEQVKISNAIANSSLKEASDSQ 561

Query: 121 LQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ 133
            QPL  N+KTLLEATPQS QEGWA+AKKDINTLKFE ESVKTKYLELQ+EME+LQ
Sbjct: 562 FQPLVTNRKTLLEATPQSFQEGWATAKKDINTLKFELESVKTKYLELQTEMESLQ 616

[Close]

BLAST of Sed0012910 vs. ExPASy Swiss-Prot
Match: Q9FMF5 (Root phototropism protein 3 OS=Arabidopsis thaliana OX=3702 GN=RPT3 PE=1 SV=2)

HSP 1 Score: 152.9 bits (385), Expect = 2.5e-36
Identity = 97/180 (53.89%), Postives = 112/180 (62.22%), Query Frame = 0


Query: 1   MSVARLVDSYLTEVAKERNLSLTKFQ--------------------------ACPTPAEH 60
           M VARLVDSYLTEVA++RNL LTKFQ                          A PT +EH
Sbjct: 503 MRVARLVDSYLTEVARDRNLPLTKFQVLAEALPESARTCDDGLYRAIDSYLKAHPTLSEH 562

Query: 61  ERKRLWRVMDSQKISNGA-----------------FLFSEQVKISNTIANSSLKEAN--- 120
           ERKRL RVMD QK+S  A                  LFSEQVKISN +AN+SLKE+    
Sbjct: 563 ERKRLCRVMDCQKLSMDACMHAAQNERLPLRVVVQVLFSEQVKISNALANTSLKESTTLG 622

Query: 121 --YSQLQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ 133
                 QP+  N+KTL+EATPQS QEGWA+AKKDINTLKFE E+VKTKY+ELQ+EME +Q
Sbjct: 623 EAMGTYQPMIPNRKTLIEATPQSFQEGWAAAKKDINTLKFELETVKTKYVELQNEMEVMQ 682

[Close]

BLAST of Sed0012910 vs. ExPASy Swiss-Prot
Match: Q5KS50 (Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CPT1 PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 8.8e-29
Identity = 89/181 (49.17%), Postives = 104/181 (57.46%), Query Frame = 0


Query: 3   VARLVDSYLTEVAKERNLSLTKFQ-----------AC---------------PTPAEHER 62
           VARL+DSYL+EV+++RNLSLTKFQ           AC               PT  EHER
Sbjct: 507 VARLLDSYLSEVSRDRNLSLTKFQVLAESLPESARACDDGLYRAVDSYLKAHPTLTEHER 566

Query: 63  KRLWRVMDSQKISNGA-----------------FLFSEQVKISNTIA--------NSSLK 122
           KRL RVMD QK+S  A                  LF+EQVKISN +A        +SS  
Sbjct: 567 KRLCRVMDCQKLSFDACMHAAQNERLPLRVVVQVLFTEQVKISNALASSSAALRSSSSAP 626

Query: 123 EANYSQLQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENL 133
            A+ +   P  R Q  LL+ TPQS QEGWA+AKKDINTLKFE ES+K KYLELQ EM+ L
Sbjct: 627 GADAAPAMPTTRRQ--LLDGTPQSFQEGWAAAKKDINTLKFELESMKAKYLELQHEMDAL 685

[Close]

BLAST of Sed0012910 vs. ExPASy Swiss-Prot
Match: Q9LFU0 (BTB/POZ domain-containing protein DOT3 OS=Arabidopsis thaliana OX=3702 GN=DOT3 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.2e-04
Identity = 43/166 (25.90%), Postives = 77/166 (46.39%), Query Frame = 0


Query: 2   SVARLVDSYLTEVAKERNLSLTKFQAC--------------------------PTPAEHE 61
           S+++L+D+YL E+AK+  L +TKFQ                            P+ ++H+
Sbjct: 386 SISKLLDNYLAEIAKDPYLPITKFQVLAEMLPENAWKCHDGLYRAIDMFLKTHPSLSDHD 445

Query: 62  RKRLWRVMDSQKISNGAFLFSEQVKISNTIANSSLKEANYSQLQPLARNQKTLLEATPQS 121
           R+RL + M+ +K+S  A L + Q   ++ +   ++ + N   L       + +++     
Sbjct: 446 RRRLCKTMNCEKLSLDACLHAAQ---NDRLPLRTIVQINTQVLFSEQVKMRMMMQDKLPE 505

Query: 122 LQEGWASAKKD---------INTLKFEHESVKTKYLELQSEMENLQ 133
            +E  +  ++D         I TLK E E+VK K  ELQS+   LQ
Sbjct: 506 KEEENSGGREDKRMSRDNEIIKTLKEELENVKKKMSELQSDYNELQ 548

[Close]

BLAST of Sed0012910 vs. ExPASy TrEMBL
Match: A0A6J1D4V9 (root phototropism protein 3-like OS=Momordica charantia OX=3673 GN=LOC111017624 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.0e-40
Identity = 109/175 (62.29%), Postives = 117/175 (66.86%), Query Frame = 0


Query: 1   MSVARLVDSYLTEVAKERNLSLTKFQ--------------------------ACPTPAEH 60
           M VARLVDSYLTEVA++RNLSLTKFQ                          A PT  EH
Sbjct: 442 MRVARLVDSYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKAHPTLTEH 501

Query: 61  ERKRLWRVMDSQKISNGA-----------------FLFSEQVKISNTIANSSLKEANYSQ 120
           ERKRL RVMD QK+S  A                  LFSEQVKISNTIANSSLKEA+ SQ
Sbjct: 502 ERKRLCRVMDCQKLSIDACMHAAQNERLPLRVVVQVLFSEQVKISNTIANSSLKEASDSQ 561

Query: 121 LQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ 133
            QPL  N+KTLLEATPQS QEGWA+AKKDINTLKFE ESVKTKYLELQ+EME+LQ
Sbjct: 562 FQPLVTNRKTLLEATPQSFQEGWATAKKDINTLKFELESVKTKYLELQTEMESLQ 616

[Close]

BLAST of Sed0012910 vs. ExPASy TrEMBL
Match: A0A5D3CB29 (Root phototropism protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold544G00270 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.3e-40
Identity = 108/175 (61.71%), Postives = 116/175 (66.29%), Query Frame = 0


Query: 1   MSVARLVDSYLTEVAKERNLSLTKFQ--------------------------ACPTPAEH 60
           M VARLVDSYLTEVA++RNLSLTKFQ                          A PT  EH
Sbjct: 442 MRVARLVDSYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKAHPTLTEH 501

Query: 61  ERKRLWRVMDSQKISNGA-----------------FLFSEQVKISNTIANSSLKEANYSQ 120
           ERKRL RVMD QK+S  A                  LFSEQVKISN IANSSLKEAN SQ
Sbjct: 502 ERKRLCRVMDCQKLSIDACMHAAQNERLPLRVVVQVLFSEQVKISNAIANSSLKEANDSQ 561

Query: 121 LQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ 133
            QPL  N+KTLLEATPQS QEGWA+AKKDINTLKFE ES+KTKYLELQ+EME+LQ
Sbjct: 562 FQPLVTNRKTLLEATPQSFQEGWATAKKDINTLKFELESMKTKYLELQTEMESLQ 616

[Close]

BLAST of Sed0012910 vs. ExPASy TrEMBL
Match: A0A0A0KZC3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G113150 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.3e-40
Identity = 108/175 (61.71%), Postives = 116/175 (66.29%), Query Frame = 0


Query: 1   MSVARLVDSYLTEVAKERNLSLTKFQ--------------------------ACPTPAEH 60
           M VARLVDSYLTEVA++RNLSLTKFQ                          A PT  EH
Sbjct: 442 MRVARLVDSYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKAHPTLTEH 501

Query: 61  ERKRLWRVMDSQKISNGA-----------------FLFSEQVKISNTIANSSLKEANYSQ 120
           ERKRL RVMD QK+S  A                  LFSEQVKISN IANSSLKEAN SQ
Sbjct: 502 ERKRLCRVMDCQKLSIDACMHAAQNERLPLRVVVQVLFSEQVKISNAIANSSLKEANDSQ 561

Query: 121 LQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ 133
            QPL  N+KTLLEATPQS QEGWA+AKKDINTLKFE ES+KTKYLELQ+EME+LQ
Sbjct: 562 FQPLVTNRKTLLEATPQSFQEGWATAKKDINTLKFELESMKTKYLELQTEMESLQ 616

[Close]

BLAST of Sed0012910 vs. ExPASy TrEMBL
Match: A0A1S4E3Y8 (root phototropism protein 3 OS=Cucumis melo OX=3656 GN=LOC103501163 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.3e-40
Identity = 108/175 (61.71%), Postives = 116/175 (66.29%), Query Frame = 0


Query: 1   MSVARLVDSYLTEVAKERNLSLTKFQ--------------------------ACPTPAEH 60
           M VARLVDSYLTEVA++RNLSLTKFQ                          A PT  EH
Sbjct: 442 MRVARLVDSYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKAHPTLTEH 501

Query: 61  ERKRLWRVMDSQKISNGA-----------------FLFSEQVKISNTIANSSLKEANYSQ 120
           ERKRL RVMD QK+S  A                  LFSEQVKISN IANSSLKEAN SQ
Sbjct: 502 ERKRLCRVMDCQKLSIDACMHAAQNERLPLRVVVQVLFSEQVKISNAIANSSLKEANDSQ 561

Query: 121 LQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ 133
            QPL  N+KTLLEATPQS QEGWA+AKKDINTLKFE ES+KTKYLELQ+EME+LQ
Sbjct: 562 FQPLVTNRKTLLEATPQSFQEGWATAKKDINTLKFELESMKTKYLELQTEMESLQ 616

[Close]

BLAST of Sed0012910 vs. ExPASy TrEMBL
Match: A0A5B7B3H8 (Putative root phototropism protein 3 OS=Davidia involucrata OX=16924 GN=Din_032485 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 5.7e-39
Identity = 104/175 (59.43%), Postives = 115/175 (65.71%), Query Frame = 0


Query: 1   MSVARLVDSYLTEVAKERNLSLTKFQ--------------------------ACPTPAEH 60
           M VARLVDSYLTEV+++RNLSLTKFQ                          A PT +EH
Sbjct: 438 MRVARLVDSYLTEVSRDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKAHPTLSEH 497

Query: 61  ERKRLWRVMDSQKISNGA-----------------FLFSEQVKISNTIANSSLKEANYSQ 120
           ERKRL RVMD QK+S  A                  LFSEQVKISN IAN+SLKEA  SQ
Sbjct: 498 ERKRLCRVMDCQKLSIDACLHAAQNERLPLRVVVQVLFSEQVKISNAIANNSLKEAGESQ 557

Query: 121 LQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ 133
            QP+  N+KTLLE TPQS QEGWA+AKKDINTLKFE ESVKTKYLELQ++MENLQ
Sbjct: 558 FQPMISNRKTLLEGTPQSFQEGWAAAKKDINTLKFELESVKTKYLELQNDMENLQ 612

[Close]

BLAST of Sed0012910 vs. TAIR 10
Match: AT5G64330.1 (Phototropic-responsive NPH3 family protein )

HSP 1 Score: 152.9 bits (385), Expect = 1.8e-37
Identity = 97/180 (53.89%), Postives = 112/180 (62.22%), Query Frame = 0


Query: 1   MSVARLVDSYLTEVAKERNLSLTKFQ--------------------------ACPTPAEH 60
           M VARLVDSYLTEVA++RNL LTKFQ                          A PT +EH
Sbjct: 503 MRVARLVDSYLTEVARDRNLPLTKFQVLAEALPESARTCDDGLYRAIDSYLKAHPTLSEH 562

Query: 61  ERKRLWRVMDSQKISNGA-----------------FLFSEQVKISNTIANSSLKEAN--- 120
           ERKRL RVMD QK+S  A                  LFSEQVKISN +AN+SLKE+    
Sbjct: 563 ERKRLCRVMDCQKLSMDACMHAAQNERLPLRVVVQVLFSEQVKISNALANTSLKESTTLG 622

Query: 121 --YSQLQPLARNQKTLLEATPQSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ 133
                 QP+  N+KTL+EATPQS QEGWA+AKKDINTLKFE E+VKTKY+ELQ+EME +Q
Sbjct: 623 EAMGTYQPMIPNRKTLIEATPQSFQEGWAAAKKDINTLKFELETVKTKYVELQNEMEVMQ 682

[Close]

BLAST of Sed0012910 vs. TAIR 10
Match: AT5G64330.2 (Phototropic-responsive NPH3 family protein )

HSP 1 Score: 48.5 bits (114), Expect = 4.8e-06
Identity = 29/49 (59.18%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 1   MSVARLVDSYLTEVAKERNLSLTKFQ----ACPTPAEHERKRLWRVMDS 46
           M VARLVDSYLTEVA++RNL LTKFQ    A P  A      L+R +DS
Sbjct: 503 MRVARLVDSYLTEVARDRNLPLTKFQVLAEALPESARTCDDGLYRAIDS 551

[Close]

BLAST of Sed0012910 vs. TAIR 10
Match: AT5G10250.1 (Phototropic-responsive NPH3 family protein )

HSP 1 Score: 47.8 bits (112), Expect = 8.2e-06
Identity = 43/166 (25.90%), Postives = 77/166 (46.39%), Query Frame = 0


Query: 2   SVARLVDSYLTEVAKERNLSLTKFQAC--------------------------PTPAEHE 61
           S+++L+D+YL E+AK+  L +TKFQ                            P+ ++H+
Sbjct: 386 SISKLLDNYLAEIAKDPYLPITKFQVLAEMLPENAWKCHDGLYRAIDMFLKTHPSLSDHD 445

Query: 62  RKRLWRVMDSQKISNGAFLFSEQVKISNTIANSSLKEANYSQLQPLARNQKTLLEATPQS 121
           R+RL + M+ +K+S  A L + Q   ++ +   ++ + N   L       + +++     
Sbjct: 446 RRRLCKTMNCEKLSLDACLHAAQ---NDRLPLRTIVQINTQVLFSEQVKMRMMMQDKLPE 505

Query: 122 LQEGWASAKKD---------INTLKFEHESVKTKYLELQSEMENLQ 133
            +E  +  ++D         I TLK E E+VK K  ELQS+   LQ
Sbjct: 506 KEEENSGGREDKRMSRDNEIIKTLKEELENVKKKMSELQSDYNELQ 548

[Close]

BLAST of Sed0012910 vs. TAIR 10
Match: AT1G30440.1 (Phototropic-responsive NPH3 family protein )

HSP 1 Score: 43.5 bits (101), Expect = 1.5e-04
Identity = 47/175 (26.86%), Postives = 72/175 (41.14%), Query Frame = 0


Query: 2   SVARLVDSYLTEVAKERNLSLTKFQAC--------------------------PTPAEHE 61
           +VA+L+D YL EVA + NL L KFQA                           P  AE E
Sbjct: 407 AVAKLIDGYLAEVAPDVNLKLPKFQALAASIPEYARLLDDGLYRAIDIYLKHHPWLAETE 466

Query: 62  RKRLWRVMDSQKISNGA-----------------FLFSEQVKISNTIANSSLKEANYSQL 121
           R+ L R++D QK+S  A                  LF EQ+++  ++A   L   N    
Sbjct: 467 RENLCRLLDCQKLSLEACTHAAQNERLPLRIIVQVLFFEQLQLRTSVAGCFLVSDNLDGG 526

Query: 122 QPLARNQKTLLEATP-QSLQEGWASAKKDINTLKFEHESVKTKYLELQSEMENLQ 133
               R+   +           GWA+A ++   LK   +S++ +  EL+ E  N++
Sbjct: 527 SRQLRSGGYVGGPNEGGGGGGGWATAVRENQVLKVGMDSMRMRVCELEKECSNMR 581

The following BLAST results are available for this feature:

BLAST of Sed0012910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149130.1	2.1e-40	62.29	root phototropism protein 3-like [Momordica charantia]	[more]
XP_016902943.1	4.8e-40	61.71	PREDICTED: root phototropism protein 3 [Cucumis melo] >KAA0056629.1 root phototr...	[more]
XP_031740285.1	4.8e-40	61.71	root phototropism protein 3 isoform X2 [Cucumis sativus]	[more]
XP_004137156.1	4.8e-40	61.71	root phototropism protein 3 isoform X1 [Cucumis sativus] >KGN53732.1 hypothetica...	[more]
XP_038905136.1	8.1e-40	61.71	root phototropism protein 3-like isoform X1 [Benincasa hispida]	[more]

BLAST of Sed0012910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMF5	2.5e-36	53.89	Root phototropism protein 3 OS=Arabidopsis thaliana OX=3702 GN=RPT3 PE=1 SV=2	[more]
Q5KS50	8.8e-29	49.17	Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CP...	[more]
Q9LFU0	1.2e-04	25.90	BTB/POZ domain-containing protein DOT3 OS=Arabidopsis thaliana OX=3702 GN=DOT3 P...	[more]

BLAST of Sed0012910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D4V9	1.0e-40	62.29	root phototropism protein 3-like OS=Momordica charantia OX=3673 GN=LOC111017624 ...	[more]
A0A5D3CB29	2.3e-40	61.71	Root phototropism protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A0A0KZC3	2.3e-40	61.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G113150 PE=3 SV=1	[more]
A0A1S4E3Y8	2.3e-40	61.71	root phototropism protein 3 OS=Cucumis melo OX=3656 GN=LOC103501163 PE=3 SV=1	[more]
A0A5B7B3H8	5.7e-39	59.43	Putative root phototropism protein 3 OS=Davidia involucrata OX=16924 GN=Din_0324...	[more]

BLAST of Sed0012910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64330.1	1.8e-37	53.89	Phototropic-responsive NPH3 family protein	[more]
AT5G64330.2	4.8e-06	59.18	Phototropic-responsive NPH3 family protein	[more]
AT5G10250.1	8.2e-06	25.90	Phototropic-responsive NPH3 family protein	[more]
AT1G30440.1	1.5e-04	26.86	Phototropic-responsive NPH3 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 114..134
IPR027356	NPH3 domain	PFAM	PF03000	NPH3	coord: 1..27 e-value: 9.8E-7 score: 28.7
IPR027356	NPH3 domain	PROSITE	PS51649	NPH3	coord: 1..116 score: 8.604799
IPR043454	NPH3/RPT2-like family	PANTHER	PTHR32370	OS12G0117600 PROTEIN	coord: 27..132 coord: 3..27
IPR029959	Root phototropism protein 3-like	PANTHER	PTHR32370:SF92	PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN	coord: 27..132 coord: 3..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0012910.1	Sed0012910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination