Sed0012804 (gene) Chayote v1

Overview


Name	Sed0012804
Type	gene
Organism	Sechium edule (Chayote v1)
Description	exosome complex component RRP43
Location	LG14: 1712167 .. 1731197 (+)
RNA-Seq Expression	Sed0012804
Synteny	Sed0012804

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACAGATATTCTCCTTCAAACTCAGACTCGTTCGCTTCCTCAAGTTTCACCTCCTCCACGGCCGCCGCATTTATCTCCTTCGAAATCGCCGCCGCCGACCGCCACAACTGAACCCCGCCGCCGGGACTTTGACCGGAGCAACGATAAACAAAAGGACTGCAGAATTTATACACACATCGGAGCGTGAGGGATAAAGAGTACGAACAATGGGACTGCCAAATACTGCTGATTCTGGAGACTTGTCGTCGGAAATGGAGGTCGATGCTTATCGGCGCCTCTTTCCGATTCAGTTTTTCGAGCGCCACCTCGCTGAATCGATACGCCCTGATGGAAGGGCACTGGGAAAGGCTAGAGATACAACCATTGCTCTTGGTTAGTTTAGTTGGAAGCTTTTGATTTTCTAAAATCGCCATTTGTTTTTTGATTTCTAGAGTGTGTTTGTTGATTGATTTTGATTCTCAAAATTGAAGTTGGGTATCGTTTGTTTGTTCGTATTAGGACCGGTATCGTCTGCGAACGGGTCTGCCCTGGCTAAGATTGGTTCTACCGTAAGTGCACTCTTTATCATCTGTGTTGGATTTTGTGATGGTTTGTTCTTAATTTGATTTAGTGCAGACAATGTTGGCTGCTGTTAAAATGGAAGTGATGACGCCTTCGATAGAGTCGCCCGACGAGGGTTGCATAGGTTGGCCATTGTCGTCTGCTAGATATTTGTTGCCATTGTTCATCATGATTTTTATGATAGTGTCCTATACATCTTTGTGATTTTGGGTTTATCTTTTTTCAGCTGTTGATTTCCATATGCCTCCGATTTGCTCTCCCATTGTTAGGCCTGGGAGACCAGCTGAAGCAGCACCTGTGATTTCAAAGCAGTTATCTGACACTATTTCAAGGTACCATTTCACCTTTTTTTGTAATTTTGCTGTGGCATGTTGCAATTTGCAGATCATATTCTTTTGTCAAGTGTGGATGACAATCAAGCTTTAAAGAATCTCTGTAATACTATTAAATCGTTTCAGATGGCTTTAGGTTAAAGATTAACCTTCTTTGTGGTTGGTAAAATGCCTCTATCCAATTTTTGACGACTTCTACTATTGGTAGCCTGCACATTTCGTTCTAGCATGATTCTTGATTAATTTGTGGCATTATAACTATCATGGAGTGACCTAGTAGTCAAGACTCAAGAGGGTCTTAAGAACTAAGAGGTGATGTGTTTAATTCATGGTGACCACTTACCTAAGAATTAATCTTTTACGAGTTTCCTTGACATCCATGTGTTGTAATGTCAGGCGCTATGTTCCGTGACAATAGTTGAGGTGCGCGCAAGCTAGCCCAAACAGTCATGGATAATTGGATATCAAAAAAAAATTTGTGACATTGTTGCAACAGTTTCTCCTTGACTTTATCGCTTAACTAGTTGGCCAAATTTTAAGGTTGCTGATGCTTGGAATAGTTTTCAAGTATGCTATTGAGCCACACATTTCTTCTCAGCTAAATTCTTTCAAACTCTCTGTCTAAACTCTCCCTAAAAGTAAACCCTAGATATCTTTTCTTATTTCTCCTCCTCCATCGACGTCGGGAAGAGGAAAGTAAACACAAATGCTAGATATTTGGCTTTCTTTGTGCTTACATGGTTGCGTGCAACATATCTCTCTAGTCTCTTGTATCTTATTCTTCTCCTACCTCATGAAATTATCCAGTCTAAGAACCCTATCCCCTCGTTGTTTTAGGGCAATTGAGACAAGGGTTTCGATGAAACCGGAGGCGCCGGTTATGTGGATGGTGTGGGCAGAATTGGAGCGCTTTTGGGCGGAGCGGCTGACTTTTTTCTCCCAATTATGGCCACCCCATGAGTCGCCGCCGCCGTCGAGAGCATGGCGGGGCGAGGCCGATGAGGAAGGGGGAGAGAGGAAAATGGGGGCTTGTACCATTTAGATTTCTTAATACATGGTTGGATCATCATACCTTTCATGAAATGGTGGAGAACTGGTGGACGAAAAATAGGATGATCGGGTGGCCTGGGCATGGTTTTATACAAAAGCTCAATGGGCTCAAAGTTGTGATTAAGTGATGGAACCACGAGACATATGGCAATCACAAAGCTAAAAGCAGTGCTCTCAAAATGCTTATCTCATCCATTGATGATAAAGAAGCCTTTGGTCTGGACAGATCTGACTATGACAGAAGGTTGGAAGCCAAAACTGAATTACTAAACATATGTGCCAAAGAGCAATCCATTTGGATTCAAAGAAGCAAGGCCACATGGCTTGCACTAGGGGACGAAAAATCCAGCTTTTCTCACAAATGCGTGGTTGCCAATAGAAAGAGAAATACTATCTTGGAGATTTCATCTTAAAACGGAAACAGTATGGTGACAGACTCTGACATTGAGAATGAATTTGTATCCTTCTATAAAAATCTCTACACAAAGAAGAAAAAGAGAGACTCATTTCCAATTGTTGAGGAGTGGGATCCTATTTCTATTGATCAAAGCAATGCTTTGGAGTTACTTTTTACTAAAACAGAGATTTGAAGAATTAAGTTATTTAAGGTATTGAAATGTCTTGAATCGTGGATGGAATATAAGGAGTTTAAACCAATGATGGACTAATGGTGGATGAATACACTGTTGCGGGGCTGGCCAGGTCATGCTTTCACACAAAAACTGAAGGGCTTTAAGGAAGTTGTCAAAGCGTGGAACAGAACAGTATTTGGCAATGTGACAGACAAGAAAAACCAATTGAGTTTAGAATTGAATATTCTGGATATGCTGGAAGAAAGTGGTCCTTTTACAACTTGTTCAAATTGCACAAAGAGATTCTATAAAGGCACAACTAATGGACATTGCGGTTAGGGAGGAATCTTTATGGAAGCAAAGCTGTAAAGCCAACTGGTTGGAATTTGGTGATGAAAACTCTTAACTCTTTCACCGCATTGTGGCAGCTAGAAGACGCAAAAGCACAATCATTGAAATTCTTTCCAGGAATGGCAACAACTTGATCAATGACTCTGAGATTGAGAAAGAATTTCTTGACTTTTATGAGCAGCTCTATACAAAAATTGGAGGTTCTCGAGCTTTCCCTCAGCTACTGGATTGGAGCCCCATCTCAGTGCAACAAGCATCCGAGCTTGAGCTACCATTCTGATAGAATCTACCACCAAAATGATAGAATCTACCACACTATTTTATTAATCTATGATAAAACCTCTCGAGAGAATCTCTCAAAGAGCCGCAATACAATAATGATAATTCAATGAATGAAAAGAGTAGCCTATGCCTTCTTATTTATAGCAATCCTAGGATGTAACCTAATTTTGGAAATAACTCTATTTAGGCCCATAAGCCCAATACAACCTAAATTCGCATAATAAAAATATATTAAAATAGTAAATAACTCATTCTTCACTTGCTCCGCCTCGAATAAACTTTTAATGTTTCCGGGATCGTATCAATACTTCTCCTCCACAGAGCCACCTTGTCCTCAAGGTGAAATTCCGGAAATTGCAAATCTAAATCAGCCGCGGATTCCCACGTAGCATCCTCTGGCACGGAGCCTTCCCATTGAACCAAAACTTGGCACGCGCCGGGCGCCTGTAAATCCTCTTGCACGCCCAAAATGGCCTTAGGACGAACCACCATGCACAAATCATCTCCCACCAAGGATGGTGTAGACATGACAAGAACCGAAGAATCTCTCGCTTTACGCAGAACTGATACGTGAAATACCGGGTGAATCTTAACTGTCGGCGGTAGTTCCAAACGGTAAGCAACAGGACCCACTCGTGCCAGTACACGGTAGGGACCAATAAACCTCGGTGCCAACTTCGGGTGTTTAAATTTAGCCAAAGAAGATTGACGGTATGGTCTAAGCTTGATATACACCAGGTCGTCAATACTAAACTGTATATCCCGGCGTTTGGCATTTGCGCGGTCCGCCATAGATTGCTGCGCTCGCGACAAACTAGCCTTTAAGGTGTCCAAGATCCGATCGCGATCCATCATCATTGAATCCACAGTCGCCACTGGGCTAGCACCATGATCATACCCCAAAATGGAAGGAGGGGGTCTGCCATAAACAATCTCGAAAGGTGTCGTACTCATGGACGAATGGAAAGAAGTGTTAAAACTGTACTCCGCCCAGGACAACCATTGGTACCACGCCTTAGGTTGATGCATCATAAAACATCTCAAATAGGATTCTAAACAACGGTTCACCACCTCAGTTTGCCCATCAGTCTGTGGATGGTAAGTAGTGCTACGACAGAGTTTAGTGCCAGTAGCTTTAAACATCTCTTCCCAAAGTAAACTTGTAAAAACCTTATCACGGTCGGACACAATACTTTTCGGAATTCCATGCAGCCGGACGATCTTTTTGATGAACACCTTCGACACCGACAATGAAGAAAACGGGTGTCGAAGAGGTATGAAATGAGCATATTTTGAGAGACGGTCAACCACCACCAGTATAGTGTCATAACCCTCTGATCGCGGTAATCCCTCCACAAAGTCCATCGAAATGTCTTCCCAGACCCGTGCAGGAATCGGTAACGGCTGTAACAACCCAGCAGGAGATAAGGATAGGAGTTTAGCTTGAACACAAATAGAACATTCGGCAACAAAAGAACGCACATGGGCCTTTATTCCTTGCCAATACACTTCCTTAGCCAGACGCTGATAAGTTTTAAGGACTCCGAAATGTCGCCCAATAGCACCACTATGGAATTCAAGCAACAATAGAGGAATCGTTGGGGATGTCGGAGGCAAAACCAGTCTACCCTGATAAAGCAAAACATCACCAACTACTGAGTATCCAGGAGGGCCCTCCTCGCCAGCTGCCAACGATTTATAAATTTTCATTAACTTAGCATCCTCCTTAACCTGTTGTGTAAACACGGCTGTGTTAATTCCAGCCACCACACTCAGCATGCCCAGCTCGCATGTCGCGGGCATTCGGGATAGCGCATCTGCGGCTCGATTTTCAGGACCCTTCTTATATTCAATGTTGAAATCATATCCCATTAGTTTGGCAACCCAACGCTGATAGTCGCCATCCACTACAGGCTGTTCCAGAAGAAACTTAAGACTCTTCTGATCAGTGCGTAGAACAAAGTGATGCCCCAACAGATAGGCCCGCCAGCGCTGAACAACGAAAACTATTGCCATCAATTCACGTTCATACACAGGTTTCACGTGATGAGTAATTGGCAATGCCTTACTAAAATATGCTATCGGTTGACCCTGTTGCATCAGAATTGCTCCCACTCCTATACCTGACGCATCGGTTTCTACCACAAATATCTGGTCAAAATCTGGCAATCGTAGAACTGGAACACTACTCATAGCATGTTTCATTCTCTGAAAACTGTCTTCCGCAGCAGATCCCCATTCAAACTTCCCTTTCTTTAATAACTGAGTCAACGGGAAAGCCATGGACTCATAGTTAGCCACAAATCGACGATAGTATCCTGTCAACCCCAGGAATCCTCGGAGGTCCCTAATATTTCGAGGACTTGGCCACTCTATCATTGCTTCGATTTTTGCCGGGTCGGCTGAAACGCCTTCCGCCGAAATGAAATGCCCTAAGTACTCAATGCGTTGCAAACCAAATTGGCATTTCTTGGCATTTGCGACAAAAGCATGTGCCTGCAGCACGTCAAAAACTCGAGCCAGGTGCTCTCTGTGTTCTTGAATATTCATGATGTAGATCAAAATATCATCAAAAAATACCAGCACGAACTTACGCAGATAAGACCGCAAAATCTAGTTCATCACAGACTGGAAAGTAGCCGGAGCATTTCGTAACCCAAAAGGCATGACTACAAACTCGTAATGCCCCTCATGAGTCCGAAAAGTTGTCTTGTGTATGTCAGTCGGTTTGACACGGATTTGGTGATATCCCGCCTTCAGGTCAATTTTCGAGAATATGGATGCGCCATGAAGCTCATCTAACAATTCATCCACCAGCGGTATCGGGTACTTATCCGGCACCGTAGCTTGGTTCAAGGCGCGGTAGTCGACACAAAAACGCCAACTTCCATCCTTCTTTTTCACTAGCAATACAGGACTAGAGAATGAGCTCGTGCTTGGGCGAATTACCCCTGCTAACAACATTTCCCTCACTAATTTATCTATCTCATTCTTTTGGTATTGTGGGTACCGGTACGGACGGACATTCACTGAGCTAGTTCCCGCAATCAGTTCAATCGCATGGTCACAGTTTCTTTCAGGTGGTAAATCTGCCAAAGATTGATAAACAGGTGAAAAAGATTCAATTAACGAGTGCAGCTCTCGGGGTACCTGAGATAAATCGGGAAGCATCTTAGTCGGCCCACAATCATGTGCTGTCGCCTCAATCATGTTTAACTCGACCAGTAATCCTTGGTCCTCAGGACGTAGGGATTTCATCATTGATTTCAATGACACTTGTGCCTTTACCAAACGGGGGTCCCCTTGCAACTCTGCCTGCCATGATCCCAACACAAACCACATTTTCAGGGAGCTAAAATTAAATTCAATCTTTCCCAATGTCTCTAGCCATGCCACCCCCAAAATCACATCTGCGCTACCTAAAGGTAATGGTAAGAAATCATTGACTATTTTCAGTTCAGCCAGATGTAGAACGACATTTTTACAAATCCCCGCCGTTCGCACAGATTCGCCGGTTCCCAACATGATGCCATAATCGTTTGAAGGTTCTACTGGTAAATTAAGCTTTTCCACAATGACGTCGGAAATAAAGTTATGGGTGGCCCCACAATCTATAAGAACTACTACCTCCAACCCCTGGATAAACCTAGTGACTTTCAAAGTCTTTGGTGAGCTCAGCCCTGCCAAGGAGTTTAAGGACAAAGCCGCTAAATCCCTTGTATCTCCCGTATCTTCAATAGTTTCATCCTCCAATGCCTCTTCATTTTCGTAGGATTCCTCGTGATAAATTGTGTCTCGTACTACCAATATCTCCAAAGATTGAAGTTCTTTCTTTTTGCACCGATGCCCCGGAGCAAATTTCTCGTCGCAACGAAAACACAAGCCTTTATCGTTCTGGACACGGATTTCACTATCTCATCAAACGCTTTATATGGCATGATGGGTTCACAGATTGTTTGTATTTGGTTTAGACGTAGAGTACGTTGTAGTTCTCATAGTTGAAACACCTACACCTTTTGCGCTAACTAGCCCAGAACCCACACTTGGTTTACTCACTAGTCCCGTGCTCCCCCCCTTTCCTAGGGCTCGGAAAGCCAGATCATCTTCAATTACCTGTGCCATGAACTTTTTATCTTGGATTCCAACCAGACGCAATTTTCTCATTTCACTCCTGATTTCTTCTTTTTTAACAGCCCACTACCCTTCTAACATACTTTGGAACTAATATCGCGCATCCCCTTGGCATACTTCTCAAACAATCGCCGATACTCTTTAACAGTGTCCTCCTGCCGCAAACTCATCAGCTTAGCGTACCTGTTGTCATTCATGCTCGGTTGGAAACGGTGTAAGAGTAGTTCTCGAAATTCTTCCCAAGAACTGATCGGAGATTGATCTTCTTCATACTGCAGCCATTCTAGAGCCTCACCCTCCATACACAAAGCCGCGGCGTCGACTCGTTCCTGTCCATTTAGTCGGTTGACCCAAAAATACCGTTCCACTTGACACAACCACCCTTCCGGATCCTAATCGGTAAGCCCCTTGAAAACGGGCATCTCGAGCTTTCGTAACCTTCTGTCAAACACTGTACCTTCTCTTTCTCCTGCTCTTGGTCCTCCACGTTCATAACGATCCTCCCACTCCCTCCAGTCCTCTCGGTCCCCCTCTCGATTATAGCCATCCCACCCCCGTTCGTTCCAACCATCGTGCGCTATCGGCCTCTCATAACCAATGCGCACCCTCCTATCTTCCGGTGATTCGTGGACTCGGCTGCCGACCTTCCGCTTGCCTCCCGATCCCCCACTGTTACCCTCATCGCCAAACCCCGGGTACCTCTCTCTCCGGTCCAACCCAACTGGCCCAGTCCAACCCGAACGGATAAACCCACCCCGACCCAGTCCCCCTTGACCGCCAGCGTGCCACCCGCTGCTCGGCCCACCGTGCCACACGCCCGGCCTACAGCCACCACGCCCCCGCTCACCCCCGACTCCGTCGCCGCCCGGGCCCCAGCCCACTCCTTCCGCGCCGCCCACGCCCGACCCACAGCCCCCACGCCCCCACTCGCCTCCGACGCTGCACGCTCCCACGCTCGTGCCCCAGCCCACAGCCTCCGTACCGCCAGCGCCCGAACCCCAGCCCGCGCATCCTCTCTACTCGCTCGCGCGCGCGCGCGCCGCCCGTCTGTCGCTTGGCGCCGCTCGGCCGGCCGCGTCGCGCCACGCCCGCTTGCTCCTGTCCGTCGCCCTCTGTCTGCGCCGAGCCTTCTCCACCCTTCGTCAGGCCCGACTCCGCCGCCGGCCCAACCCCTACAGCCCCTGCGACGCCTCCTGCGCCAGCCCCTGCTGCCGAGCCCACCCCTGACCCTCCCGATTCGGTTGACACTCCCTTACCTTTGTCACTTGCTTTGCCTCGGGATTTGGTTGTTCGGTGTTCGCTCTAGCAACTTTTGTATATTTAGGTTAATCGACCTATCTCTGGTCCGGTGACTATTCATCGTTGCCAGTTGAGCCTCGAATTCCTGTTGCTTCTTCAACATCTCGGCCCCACTCGATTCGCACTCCTGAACCCTCGTCTCCATCTTGGTAGTTACCATTCCGGGATCGGTAAATGGCTTTGATACCAAAATGATAGAATCTACCACACTATTTTATTAATCTATGATAAAACCTCTCGAGAGAATCTCTCAAAGAGCCGCAATACAATAGTGATAATTCAATGAATGAAAAGAGTAGCCTATGCCTTCCTATTTATAGCAATCCTAGGATTTAACCTAATTTTGGAAATAACTCTATTTAGGCCCATAAGCCCAATACAACCTAAATTCGCATAATAAAAATATATTAAAATAGTAAATAACTCATTCTTCACTTCTTGCTCCGCCTCGAATAAACTTTTAATGTTTCCGGGATCGTATCACATTCATAGAAAGAGAAATTTGGGAAGCGATAAAAAACTTGGGATCTAACAAGACATCGGGCCCTGTATAAAAAATCTTGGAACACTCTTAAGCCGGACATATTGAGAGTGTTCCAGGAGTTTTTTAAGAATGGAATTATCAATGCCAGCTTGAATGAAACATATATTTGTCTTATCCCTAAGAAGGTTGATGCCAAAAAAGTCACAATTACAGACCAATTAGTATGATATCATGTTTGTACAACTGGTTAGGGTCCTTCCCAAAGATTAAAGAGAAGTTTGCCTTGTACGGTTACTGACTCCCAAGCTGCATTTGTGGCGGGGAGAAATATCTTGGATGCTATCCTCAATTCCAATGAGCTCATTGATGAACTTAAAAGAAAGAAAGAAAAAGGGATCTTCGTCAAGCTTGACATAGAAAAAGCATTTGATACTGTTGATTGGGATTCCTCGATAGAATCTTGGAAGCAAAAAGTTTTGGTCTAAAATGGAGACAATGGATACGTGGTTGTATCTCCTCTGCAAATTTCTCCATTATTATCAACGGAAAGCCAAGGGGTAAAATCAGATCTACTAGAGGGCTCAGACAAGGGGATCCTCTTTCCCTATTTCTTTTCATTCTTATTATGGATTGCTTTAGTAGAATGATGAAGGAAGAGGTCAACTACCATAAAATACAGGGCCTTAAGATTGGATCTATGAATCCTTGCATTAGCCACCTCCAGTTTGCTGATGATACTCTCTTTATGTCGGAATTCGATCCTGCTGCTATAGAAGCTCTCTACCAAGTTGTTTTTTCCTTTGAATTTGCTTCTGGCCTGAAGATCAACATCAGCACGACAGAATTGTTGGGTGTGAATATTGATGATGCAGAGCTCCAAGTTCTCTCTTTAAGATACGGTTGTAACTTGGATCCTGGCCTACTTCATACCTTGGCCTCCCATTGAATGGTAATCCTAAAACTCTTGGGTTCTGGGAACCTATGATTGAGAAGGTTGAGAAAAAGATTGCTTCATGGAAGAATCACCACCTTTCTAAGGGAGGTAGATTAACCCTTATCCAAGCTACCTTGGCCAATCTCCCTACATACTACATGTCGATCATCAAAATGCCAAGCAAAGTTGTTAGCATTCTGGAGAGACTGATTAGAAATTTTCTCTAGAAAGGTGGTAAAAATGGTAAAGGCTTGCACCTCATAAATTGGGATTCGGTCTCCCTCCCTATTCAGCTGGGTGGTCTTGGGATTGAAAGACTCAATTACTAACGCTACATTACTTTCTAAATGGATTTGGAGATTTGCAGCGGAAGACAAGGCCCTGTGGAGAAATGTTATTTATAAAAAATATGGCCCTACTAAAAGCAACAACATGCATGGAAGATCGTTGATTAACAAGGCAAGAGGTCCTTGGAAAAATATTATCCCTCTGGCCGGTCTCATCCAGGACAACATATCCTATGTCGTCAATAATGGTGAAAATACTATATTCTGGACAGATAGATGGCTCAATGGAACCCCTCTCAACCTCGCCTTTCCTTGGCTCTACAACCTATCGAAATCCAAGGAGGTGGCCGTTAATGAGGTTTGGCAGAAGGAGGAAGATTTCTGGAACTTGAGGCTTAGAAGAAATTTGAAAGAAGAAGAGATTATTGAAGCGCTATCGAATCTCCTTAACAATGTTATAATTAACGGGGACCCGGAAAAATGCTCCTGGTCGAAGGAACCATCTGGTGATTTCTCTGTACAATCATTGAAGAAGCTCTTGAACAGCGATAGCAATACAAACTCTTCTCCCATTTATAATGTCATATGGAAAGGGAAGTACCCTAAAAAGGTGAAATTCTTCCTATGGGAGCTGAGTCATGGGGCTATTAGTACCAATGATCTTTTACAGCGCAGAATGCCGCATCTCTACCTTGCACCATAGTGGTGTCCAACTGTTGTAAAACATCAGAATCTCAATCCCATCTGATATTGGAGTGTGAGTTTGCTGCAAACTTTTGGGATATCATCAGAAAGGCATTCTCTTGGAGCATAACTTTACCAAAAGATCCATTCGATATGCTTGCTCAAACTCTATTGGATCATCCATTCAAGAATGACAAGAAGGGATTGCTATGGGAATATTTCATCAAGGCTTTTTGTTGGTGTGTTTGGTGGGAGAGGAATAATAGGATCTTCAAAGACAAAGCTACCCCCCTAGACCGTTTCATTGAGAGCTTAACCTACACCGTGGTGTCCTGGTGTAAACTATCGGCTTTATTTTTGGACTATAGTTATGATGCTTTTATCCATAATTGGAAAGCTTTATTATAATTGCAGTTGTATTTTGAATTTCATACTATCAATGAAATTGTTTCTTATCCAAAAAAAAGAAATGTCTTGAATCAGTTATGTCGCACTTCAAATGACTAGTACTGGGGTCTCGTTGCCCGGTCAACGAGTCGGGGTCCAGGGGCGAAGCGCTCGATTTTGGAGGTTCAGGGCTTCATGTAAGGCGCCAAAAGGCGCACGCCTAATTAACTGCACCTTTTAAAACGAAGCTTTGAAGTTTATGGAAAGCCCTTCACCAACGTGCCACTACACCATATATTGAATAAAAATGCATTAAACATTGATATATTGGTTCGATTAAGGTTGAACCGAACCAAAATCACCTAAATCTAAAGTCAAACTAAAAATTTCGGATTCGTTTGGCTTTAACCCAACCCAATCCGAAAACAACTCAACCTAACCCAAACCCTTACGGCTTAGGTTGGGTAGTCTGAGTTCGTCGGGTTACCAGTTCCTTTGTACACCCCTACTTCTGTGCTAACAACTAACAAGAACAAAGCTTGAGTGACATCTTGTATAGCTTAGTAACCATGAGGTTATAGTTTCTGTTGGTTGATATAATTAAATTTACCCCAATGACACACATGTACCATCCACACATGAAGGCCCACTCTTTGTATTATGCTCATGACACACATGAAGGCTTTGCCAAGGTCTGTTTCTCGAGACGTTAAATCGTTAATTTTTCATTCAAACTTCTCAATGGGATAAATTTAATAGAATCCAGATTTATTACGATATAGAAATAACAAAAATACAAGATAGCCCCATGTAAATCGAGGTATTTGGGCCCTCCTCAACTCTTGAGATCACTCAAGTCCTAGATTTTTTTTTGAAAAAAGGGTATAAGGAAAAAGGAAAAATCACAACCAAAACAAAGGAGAACAAGCATAAATTTGAAAGGAGAAGTAGAAGCATAATTTGCAAAAATAAAAGGCTTAGCAAATGGATGTCCAATTAACAAGGATAAACAGATGGAATAAGAGAATGGTTTTGCTACTTCTTTTGCAGGGAGTCTGAAGTATTGATACGGTCATGAGAGAGTCTCCAGATAAAAATATTAACTTTCTTTGGGCTCTTTGATTTTCAAATTGCCTTTAGCAATCTTTTTTCCATATTTTTTTTTATGGTAATGCATATGCATTTAAGGATTCGACCAAAAAATCCCCTGATGGCCCTAAAGACCATATCGAACTATCCTTTCTCTGGCACGGAGAAAAGGGTGATATTATTATTAATTGGTGCACCAAACTCCTCAACTTCTTCATCCTTCAATGACTTCCTAAAAGATAAGCTCCATGCTGATATTTGAGCATCCCAAACTGAAAAGACTGAGCTTTCTTTTATCGATACAACAGAATAAAGTCTAGGGAAAGAGACTTTGATAGAGAGGTCAAACGCCCATTTATCATACTAGAATGAGATCTTCTGACCATCATCAAGCTTGAATCTGTATAAGATCAATTTTTGGAGGGTAAATGACCCAACTAGCTTGGAGAGGGGGGACAAAATTTGGAGGGGAAATGCCCCACGAAGATCATTTTTTTCTGTTGGGAACTAAGCCATTACTCCATCAAAATACTTGTTATCGAGAAGGACCCTAGTTTGTCTTACTCACCTACTTACCAAGCTGCTGCATTATATGCACGATAAGTTTTAAAGTGCAAGGGCATCTATTCATATTTTGAAACTGCTAGCAAGTGTTGGAATCAAACTCTTGCTGCTATTTTTTATGGGAGAATGTTTTGAAAGCTACCTCGTAGAAACTATGGGTTGAAAGAAAAGAGAGGCCTATTGGAAGCTAAAGATAAAATGTTTGAGTGACTAGGGAGAGATTTTCAACTTTATGATGCTTTGGATCATAATTTTAGGTTCTTTTTGTTTTCTACTAGTTGTAGGGCTTTTTTATTTCCTTTGGTTTTTGTAGGTTTGAATGTGTCGTATTGTATGTTTTATTTGTTTTAACTTCCTTTGTAATGAAACTGTGATATTGCTAACTATTCTGTTTGTTGTTGTATGTGTGTTCTATATTATTTCATAAGTGAGTTCGTTTCTTTGCAAAGGGTATACAATAGGTTAACTTATCGTTTATTAATACCATGTTGTTCTCTTCACAACTCTTTTCATGCTCTTTAGATGTGATCTGGTAAAGAAAGTCAAAAGTACTTTTATGTTCTTGATCTTTGTCCTAAAAGTCAATTTCCTTTCAGCACTTGACTGACTAACTTTGAAACTGATCATGTGAACTTTTCAGTTCTGGGATGATTGATCTGAGAGAATTATCTCTTGTCAAAGGAAAAGCTGCTTGGATGGCATACCTGGTATATGTTTTGAATTTATGCATTGTCAATATTAATACTTTTTATTGTCCCCAAGGGGTGGCACAGTGGTTGAAGACTTGGACTTTGAGGGCAATCTCCCCTCAAGGTCCCAGGTTCGAGACTCAGCTGTGACACTTCTTCGATGTCTCCCGGTGCCTGGCCTAGGGACGGGCGTGGTTACCCTTGTTTCAAAAAAAAATATTAATACTTTTTATTACTGTAGAAGTATTTGGTTGTTGAAGTAAGGTCACCATTATTTTATCTTTTCTTTCTCTTTGAAATATGTACTTGTGCCATTGTTACTTACTCTTATTGGATTTTTATTTTGTAAGCTGATTTTGTCTGATTACAGATTTATTATTTTAGTTGACCATTTTGAATGAGATATCAACTTGCCATGTGTTTCCCAGGATATTTATTGCTTGGATGCAGACGGATCTCTTTTTGATGCTGCACTTCTTTCTGCAGCTGCTGCATTTTCTCACTGTAAGATTTCAGGCTTTCTACTAGTTCATAACTTAATGTATTTCTGCGTAATTTGGTAGATGTTATGCTTATGGCATTAATGCTGGTTCCGGGACATTTGTTCTCCATTAAGAATAATATTCAAATCATTTGTTCTCCATTAATGCTGGTTCTGGGACATTTGTTCTCCATTAAGAATAATATTCAAATCATTGTCTCCAAAGGGTGGCGCAGTGGTTGAAGACTTGGACTTTGAGGGTATGCTCCCCTCAAGGTCTAAAGTTCGAGACTCACCTGTAACAACACTCCTTCGATTTCTCCGGTGCCTGGCCTAGGGACGGGAGTGGTTACCCTTGTTTCAAAAAAAAAAAAATTCAAATCATTGGTTGATACTTCATAGTTCATACTTCTAATCCTTTATACATGATTTGTGTTACTAGATTACCTTCAGTTCTAGTCCTTTTATGCTCTTTCCACCCTTGATAATTTCTGGAAGGGGTGGAGTGGAGTCCTATTTTTGAAGTTGATTACTTCGACTTGATGGTTCCTTTCACCTGGAAGAAATCAGGAAGGTTGTTTTTAGTTCTGATAGAAGTGAAGCCCGTGGCTGATGAGTTCTCTATGACTGTTTTTCAAGATTGTGGGAGACTGAAATAAGATTTGTGCTAGGTCTTCCATGAGTTTTTTGAGAGCAGGATTTAGGATAGCTCTCTTAGTGAAATCTTTGCACGTCTTAATTAAAAAAGGATAGGATCGTGAAGGCGGGATATTTTAGGCCTATTAGTCTGATAATAAGTGTTTATAAGGCGACGGCCAAAATATAGATTGAGGAGGGTTCTCCCAACTAAGATAATAGACTCTCTAGGTGCTTTTATTGACGAAGGAAAACTTTAAATAGTGTTGCTGTCAATGAAGCCGTTGAGGACTACAGATTGTGTATGCACGAAGTTATCTTTAAAATCAATTTTAAGGTCTTTGACCTTTTTAGTATCTTGTCTTTGTTTATTGCTTATGTCTCTTTAGGCTTATCAGTCAACCATTGTACTTTTATCTCATTTTGTTGTTTTCTTTCCCTTTTTAGAGGTTTTTATGTACTTTTGCTTCTTTTCATTTTCTTAGTGAAAAGCTTGTTTCTTGTTTAAATAAAATTCTGACAATGGGGACTAAGATTTCTTGGATAAAGTTTTGGCTAAAAAAGTTTTGGGTACAAGTGGGGAGATCGTGGATGTGGAGTTGTTTTTAAGGTAATCCATTGTGGTGTGGTAAGCTTGCGAGTAGGATTTTGGCCACCAGAAATCTTTGACTAGGTAATCTTCTTTCCTTTCCTCTTTCTTTTAGTCGTGGATGTGCAGTGTAGGATTATCATGCATGGTTTAGAGAGCAGGATCATTGAAGGATTTTCGATGGAGAAGGATAATTTACCTTTATCTCATCTTCAATTTGCCGATGATACTATTTTTTATGCTTAGGAGCTGCGAATTCGTTCGTCAATCTTAATAACCTTTTTTTTACGTTGAGGAAGTATCAAGTTTAAAGATTTTTTTTGAAACACGTATTGAGATTGTGTGATAGAATCTGGATCTATCTATTAGCAAATCATCACGAACATACAAGATAAGCCAAGTGATTCAAGGTACTTGGACCCTCCCTAGATTCTTGAGATCTCTCAAGCCCTAATTCTCATACAATTCCAAAGATAGCTTCACACTAACTATCCTTCTCTATTTATAACCACTAGCCTCTAACTTGCTCTCCACGTACTTGCTAACATACTCCTATATTATTCATTAATATTCTAAGACCCCAATCCTATCATTGTGTTTGTGCCATTTTGTGGTGCTTTGGTGTGAGAGATAATAAAATCTTTAGAGGGATAGAGAGGTTGTCGGGTGATGTTTGGGTCTTCGTCAACTTCAAGTTGCATGTTATTTTTGGCCCTTATTTGTAAGTCCTTTTGTAATTATTTTCTAGGCATTATTTTACTTGACGACTCTTGGCCATTTTTATAGGTGGTCTACTTCTTGCAGGCCTTTTCTTTTATATGCACTTCTGTGCTTAATCATGTAAGTGATTAATAGGGGGCTCTAGAGGACATAAACAATAGTGTTTTTTGGGGGATGGAGAGGTCTCCGGTGGAGACCCGGATGATGTGGGGTCCCTTATTAGGTTGTGTGTTTCTCTTTGGGCCTTGGTGGCAAAACCATTTTGTTATTACACTGGGTTTTATTTGGTTAAACTGGAGGCCTTTTGTAGGCCCCACTTCCTTTTGTGGGTTCTCTCTTTTGTTTACTTTTTAATCCTTCATTTTATTGCAAAGCAAGTTTGGATGTCAATAAAAAAAAGACTATTTGTTGAGGCTTATTTGAAAACTCTGTCTTCGTTTTATAGTCATTTGATTTTTCAAAATTAAACCTACTATAAATATTAATTGCATATATGGATTTTCTTATTATCTACTTTTTCTTTATGTTTTCAAAAACCAACCTAAGTTTTGAAAATTAAGAAAAAGTAGTTTTAGAAACTTTATTGAAGAGAAAATTGTAGAGAAGTGATAAGAAAACAAATATAATTTTCTTTTCTTTTTTCTTGAAACAAGGGTAACCACGCCCGTCCCTAAACCAGGCACCGGGAGACATCGAAGGAGTAATGTCACAAGTGAGTTTCGAACCTGAGACCTTGAAGAGAGGATACCTTCAAAGCCCAAATCTTCAACCACTGTGCCACCCCTTGCGGACAACAAACATAATTTTCTTATACTCAAATGGTTATCAAGCGGCCTATCCAAAAGATGAAAAATGTTATTATCAAGTTTATTTTCTATCTTGTTTGTTAACTTTGTAATTTGAACCACTCTTAGAATGATTGCTCCCTTTTCTTTTCCGTCAAGATATTAACTTCGTCCTCGTTTATATTGTTAGTGCAAATCCCTGTTGTTGCTCTAAATGATGATGGAAAAGTAGTGTTTGTCTCTGAAGAAGAAGGGGGAGAAAACTTTGAGAAGGAACCTGTCAACAAAGAGAAAAGGAAACTTAAATTGAACTGTATTCCTTTTTCATTAACATGCTTACTCCACAAGAAGTATATCTTGGCCGACCCTACCACAGAGGAAGAGTCCATCATGGAAACTATTGTAACCGTGGTTTTGGATTCATCTGGTCAATTGGTGTCCTTCTACAAGCCGGGTGGATCCGTTCTTGCATATTCATCAGCTGTTCAGGTTCGTCTCTCGTTTCTCTTGAAAGTTCATTTATTACTGTCTTTGACTGAATCCAATTGGATGGAGAATGAACCATCGTGGTGTGACCTAGTTGTCAAGAGGACCCGGAGGAACCAAGAGATGAAGTGTTCAATTCACGGTGGCTACTTACCTAGGAATTAATTTCCTACGGGTTTCTTTGATATCCAAATATTGTAAGGTTAGGCGGTTTGTCCTATGACAAAAGTCCAAGTGTGCATAAGCTAGCCTAGACAGTCATAAATATCAAAAAAGGAAAAAGAAAAAAAAGATGGAGGATGGTGTAGTTCGTTGATATCTTCTCTCTTCACCTTTTTTGGTAAAGCAGGTTGGATTTTCAATATGATGTTGCATGTTGGATTTACTTGTATAATCGTATTATAACAGTAATTTATTTAATTGTTTGATTTTCTTATAAGTGCTCTTGAAAATTTAAAAAATGTTTAAAAGCACCTCAACTCAATAGATGAAGCCTGCTTCTAATTCGTACTTAGTGTACTTTAAAAACCATCCTAACCTCTGAAATCTGAATATAATGAATTGACTTGATTAGTTTCTTTTGTTTTTTTAAAATTTTTTTTATCAATGAACACATGCTTGGATGTGCGAAAAGTTGCATTTATAACATATCTTACTTTAGAACAGTGTTTTAAAAAGCGCAAGGCGCACTAAGACGCAATTGCCCTCTGGAGCATGAGGCGCAAGGCGCACCAAAAGACGAGGGCTTTTTTACTTAAGGCGCATTATATAAAAAAACACAAAAAAATTATATATGTGTGTATATACAATAAAAACACTTTACATGGACATAAATGAAGTTTTAACCAAGAATAATATATAAAACATACATAATATTCAACTATCAACCTTCACGCGCTTCGAATGACCTAATACCGGGATTTAAAATACAAAAAACGCAAAGGAAAATTAAAAAGCCAACGAGGCGCGCACCTTTTGCCGCCCGGGGCTTCACGTAAGGTGCCATAAGGCACGCGCCTTATTTTACACACCTCGATTGGGACAAGTGAGGTGAAAAGGTGGGACTTGAGCCTAGGCGCGCCTTTTAAAATACTCCTTTAGAATGAACGATCTTTTTCATAGACTACTATTTTGACCTAGTGGGTTGGCGGTCTAGTGGTTAAAAGCGCCTCATGGTGGCCACCTACCTAGAGGGAATTAATTTCCTACGAATTTCTTTAATACTCGATTATGTGAATAGTCAAAGTTCTCAGTTAAAAAAAAAGGAGAATAGTAAAGTGAATGTAAGCTTCCTTAGACACTCACAGTTATAAAAAAAAACTACTATTTGGACTGTATCAGTTTTGATTTTGAAGTAAATAGATGCAAATATACTAATCCCTGTGTGGTTGCAGGATTGTGTAGCATTGACGAGACAAAGATCGAAAGAACTGCAGATGATTTTAGAGGAAGCTATTTCTGGTATGGACATTGACTAAGTTGGGAATCTTTCCTCCTAATTTTATTGAATGGAATGGTGGATGTTTTGGTTTCCTCCAAATTTTGGTGATGATATTTGTTAAAACCCTGTAGTTGTTTTTCTTAGGATTTTTGATGCAGGGGTTTGATTTTTGTGACAGTTCTAAATCAAATCTCTCT

mRNA sequence

CACAGATATTCTCCTTCAAACTCAGACTCGTTCGCTTCCTCAAGTTTCACCTCCTCCACGGCCGCCGCATTTATCTCCTTCGAAATCGCCGCCGCCGACCGCCACAACTGAACCCCGCCGCCGGGACTTTGACCGGAGCAACGATAAACAAAAGGACTGCAGAATTTATACACACATCGGAGCGTGAGGGATAAAGAGTACGAACAATGGGACTGCCAAATACTGCTGATTCTGGAGACTTGTCGTCGGAAATGGAGGTCGATGCTTATCGGCGCCTCTTTCCGATTCAGTTTTTCGAGCGCCACCTCGCTGAATCGATACGCCCTGATGGAAGGGCACTGGGAAAGGCTAGAGATACAACCATTGCTCTTGGACCGGTATCGTCTGCGAACGGGTCTGCCCTGGCTAAGATTGGTTCTACCACAATGTTGGCTGCTGTTAAAATGGAAGTGATGACGCCTTCGATAGAGTCGCCCGACGAGGGTTGCATAGCTGTTGATTTCCATATGCCTCCGATTTGCTCTCCCATTGTTAGGCCTGGGAGACCAGCTGAAGCAGCACCTGTGATTTCAAAGCAGTTATCTGACACTATTTCAAGTTCTGGGATGATTGATCTGAGAGAATTATCTCTTGTCAAAGGAAAAGCTGCTTGGATGGCATACCTGGATATTTATTGCTTGGATGCAGACGGATCTCTTTTTGATGCTGCACTTCTTTCTGCAGCTGCTGCATTTTCTCACTTGCAAATCCCTGTTGTTGCTCTAAATGATGATGGAAAAGTAGTGTTTGTCTCTGAAGAAGAAGGGGGAGAAAACTTTGAGAAGGAACCTGTCAACAAAGAGAAAAGGAAACTTAAATTGAACTGTATTCCTTTTTCATTAACATGCTTACTCCACAAGAAGTATATCTTGGCCGACCCTACCACAGAGGAAGAGTCCATCATGGAAACTATTGTAACCGTGGTTTTGGATTCATCTGGTCAATTGGTGTCCTTCTACAAGCCGGGTGGATCCGTTCTTGCATATTCATCAGCTGTTCAGGATTGTGTAGCATTGACGAGACAAAGATCGAAAGAACTGCAGATGATTTTAGAGGAAGCTATTTCTGGTATGGACATTGACTAAGTTGGGAATCTTTCCTCCTAATTTTATTGAATGGAATGGTGGATGTTTTGGTTTCCTCCAAATTTTGGTGATGATATTTGTTAAAACCCTGTAGTTGTTTTTCTTAGGATTTTTGATGCAGGGGTTTGATTTTTGTGACAGTTCTAAATCAAATCTCTCT

Coding sequence (CDS)

ATGGGACTGCCAAATACTGCTGATTCTGGAGACTTGTCGTCGGAAATGGAGGTCGATGCTTATCGGCGCCTCTTTCCGATTCAGTTTTTCGAGCGCCACCTCGCTGAATCGATACGCCCTGATGGAAGGGCACTGGGAAAGGCTAGAGATACAACCATTGCTCTTGGACCGGTATCGTCTGCGAACGGGTCTGCCCTGGCTAAGATTGGTTCTACCACAATGTTGGCTGCTGTTAAAATGGAAGTGATGACGCCTTCGATAGAGTCGCCCGACGAGGGTTGCATAGCTGTTGATTTCCATATGCCTCCGATTTGCTCTCCCATTGTTAGGCCTGGGAGACCAGCTGAAGCAGCACCTGTGATTTCAAAGCAGTTATCTGACACTATTTCAAGTTCTGGGATGATTGATCTGAGAGAATTATCTCTTGTCAAAGGAAAAGCTGCTTGGATGGCATACCTGGATATTTATTGCTTGGATGCAGACGGATCTCTTTTTGATGCTGCACTTCTTTCTGCAGCTGCTGCATTTTCTCACTTGCAAATCCCTGTTGTTGCTCTAAATGATGATGGAAAAGTAGTGTTTGTCTCTGAAGAAGAAGGGGGAGAAAACTTTGAGAAGGAACCTGTCAACAAAGAGAAAAGGAAACTTAAATTGAACTGTATTCCTTTTTCATTAACATGCTTACTCCACAAGAAGTATATCTTGGCCGACCCTACCACAGAGGAAGAGTCCATCATGGAAACTATTGTAACCGTGGTTTTGGATTCATCTGGTCAATTGGTGTCCTTCTACAAGCCGGGTGGATCCGTTCTTGCATATTCATCAGCTGTTCAGGATTGTGTAGCATTGACGAGACAAAGATCGAAAGAACTGCAGATGATTTTAGAGGAAGCTATTTCTGGTATGGACATTGACTAA

Protein sequence

MGLPNTADSGDLSSEMEVDAYRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAVKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNCIPFSLTCLLHKKYILADPTTEEESIMETIVTVVLDSSGQLVSFYKPGGSVLAYSSAVQDCVALTRQRSKELQMILEEAISGMDID

Homology

[Close]

BLAST of Sed0012804 vs. NCBI nr
Match: XP_023544252.1 (exosome complex component RRP43 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 562.8 bits (1449), Expect = 1.9e-156
Identity = 291/305 (95.41%), Postives = 299/305 (98.03%), Query Frame = 0


Query: 1   MGLPNTADSGDLSSEMEVDAYRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSS 60
           MGLPN A SGDLSSEMEVDA+RRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSS
Sbjct: 1   MGLPNAA-SGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSS 60

Query: 61  ANGSALAKIGSTTMLAAVKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPV 120
           ANGSALAK+GSTTMLAA+KMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPV
Sbjct: 61  ANGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPV 120

Query: 121 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 180
           ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ
Sbjct: 121 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 180

Query: 181 IPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNCIPFSLTCLLHKKYILADPTT 240
           IPVVALNDDGKVVFVSEEEGGENFEKE VNKEKRKLKLN +PFSLTCLLHK YILADPT 
Sbjct: 181 IPVVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTA 240

Query: 241 EEESIMETIVTVVLDSSGQLVSFYKPGGSVLAYSSAVQDCVALTRQRSKELQMILEEAIS 300
           EEES+METIVTVVLDSSGQLVSFYKPGGSVLAY+SAVQDCVALTRQRSKELQMIL+EAIS
Sbjct: 241 EEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAIS 300

Query: 301 GMDID 306
           GM+ID
Sbjct: 301 GMEID 304

[Close]

BLAST of Sed0012804 vs. NCBI nr
Match: KAG7033523.1 (Exosome complex component RRP43 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 561.6 bits (1446), Expect = 4.1e-156
Identity = 290/305 (95.08%), Postives = 299/305 (98.03%), Query Frame = 0


Query: 1   MGLPNTADSGDLSSEMEVDAYRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSS 60
           MGLPN A SGDLSSEMEVDA+RRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSS
Sbjct: 1   MGLPNAA-SGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSS 60

Query: 61  ANGSALAKIGSTTMLAAVKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPV 120
           ANGSALAK+GSTTMLAA+KMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPV
Sbjct: 61  ANGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPV 120

Query: 121 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 180
           ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ
Sbjct: 121 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 180

Query: 181 IPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNCIPFSLTCLLHKKYILADPTT 240
           IPVVALNDDGKVVFVSEEEGGENFEKE VNKE+RKLKLN +PFSLTCLLHK YILADPT 
Sbjct: 181 IPVVALNDDGKVVFVSEEEGGENFEKEAVNKERRKLKLNSLPFSLTCLLHKNYILADPTA 240

Query: 241 EEESIMETIVTVVLDSSGQLVSFYKPGGSVLAYSSAVQDCVALTRQRSKELQMILEEAIS 300
           EEES+METIVTVVLDSSGQLVSFYKPGGSVLAY+SAVQDCVALTRQRSKELQMIL+EAIS
Sbjct: 241 EEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAIS 300

Query: 301 GMDID 306
           GM+ID
Sbjct: 301 GMEID 304

[Close]

BLAST of Sed0012804 vs. NCBI nr
Match: XP_008460772.1 (PREDICTED: exosome complex component RRP43 isoform X1 [Cucumis melo])

HSP 1 Score: 561.2 bits (1445), Expect = 5.4e-156
Identity = 286/305 (93.77%), Postives = 301/305 (98.69%), Query Frame = 0


Query: 1   MGLPNTADSGDLSSEMEVDAYRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSS 60
           MGLPN A SGDLSS+MEVDA+RRLFPIQF+ERHLAESIRPDGRALGKARDTTIALGPVSS
Sbjct: 13  MGLPNAA-SGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSS 72

Query: 61  ANGSALAKIGSTTMLAAVKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPV 120
           ANGSALAKIGSTTMLAA+KMEVMTPS+ESPDEGCIA+DFHMPP+CSPIVRPGRPAEAAPV
Sbjct: 73  ANGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPV 132

Query: 121 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 180
           ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ
Sbjct: 133 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 192

Query: 181 IPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNCIPFSLTCLLHKKYILADPTT 240
           IPVVALNDDG+VVFVSEEEGGENFEKEPVNKEKRKLKLN +PFSLTCLLHKKYILADPT 
Sbjct: 193 IPVVALNDDGRVVFVSEEEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKKYILADPTA 252

Query: 241 EEESIMETIVTVVLDSSGQLVSFYKPGGSVLAYSSAVQDCVALTRQRSKELQMILEEAIS 300
           EEES+METIVTVVLDSSGQLVSFYKPGGSVLAY+SAVQDC+ALTRQRSKELQ+IL+EAIS
Sbjct: 253 EEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAIS 312

Query: 301 GMDID 306
           GM+ID
Sbjct: 313 GMEID 316

[Close]

BLAST of Sed0012804 vs. NCBI nr
Match: XP_008460773.1 (PREDICTED: exosome complex component RRP43 isoform X2 [Cucumis melo] >XP_008460774.1 PREDICTED: exosome complex component RRP43 isoform X2 [Cucumis melo])

HSP 1 Score: 561.2 bits (1445), Expect = 5.4e-156
Identity = 286/305 (93.77%), Postives = 301/305 (98.69%), Query Frame = 0


Query: 1   MGLPNTADSGDLSSEMEVDAYRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSS 60
           MGLPN A SGDLSS+MEVDA+RRLFPIQF+ERHLAESIRPDGRALGKARDTTIALGPVSS
Sbjct: 1   MGLPNAA-SGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSS 60

Query: 61  ANGSALAKIGSTTMLAAVKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPV 120
           ANGSALAKIGSTTMLAA+KMEVMTPS+ESPDEGCIA+DFHMPP+CSPIVRPGRPAEAAPV
Sbjct: 61  ANGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPV 120

Query: 121 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 180
           ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ
Sbjct: 121 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 180

Query: 181 IPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNCIPFSLTCLLHKKYILADPTT 240
           IPVVALNDDG+VVFVSEEEGGENFEKEPVNKEKRKLKLN +PFSLTCLLHKKYILADPT 
Sbjct: 181 IPVVALNDDGRVVFVSEEEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKKYILADPTA 240

Query: 241 EEESIMETIVTVVLDSSGQLVSFYKPGGSVLAYSSAVQDCVALTRQRSKELQMILEEAIS 300
           EEES+METIVTVVLDSSGQLVSFYKPGGSVLAY+SAVQDC+ALTRQRSKELQ+IL+EAIS
Sbjct: 241 EEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAIS 300

Query: 301 GMDID 306
           GM+ID
Sbjct: 301 GMEID 304

[Close]

BLAST of Sed0012804 vs. NCBI nr
Match: XP_022928740.1 (exosome complex component RRP43 [Cucurbita moschata])

HSP 1 Score: 560.8 bits (1444), Expect = 7.0e-156
Identity = 290/305 (95.08%), Postives = 298/305 (97.70%), Query Frame = 0


Query: 1   MGLPNTADSGDLSSEMEVDAYRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSS 60
           MGLPN A SGDLSSEMEVDA+RRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSS
Sbjct: 1   MGLPNAA-SGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSS 60

Query: 61  ANGSALAKIGSTTMLAAVKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPV 120
           ANGSALAK+GSTTMLAA+KMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPV
Sbjct: 61  ANGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPV 120

Query: 121 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 180
           ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ
Sbjct: 121 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 180

Query: 181 IPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNCIPFSLTCLLHKKYILADPTT 240
           IP VALNDDGKVVFVSEEEGGENFEKE VNKEKRKLKLN +PFSLTCLLHK YILADPT 
Sbjct: 181 IPFVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTA 240

Query: 241 EEESIMETIVTVVLDSSGQLVSFYKPGGSVLAYSSAVQDCVALTRQRSKELQMILEEAIS 300
           EEES+METIVTVVLDSSGQLVSFYKPGGSVLAY+SAVQDCVALTRQRSKELQMIL+EAIS
Sbjct: 241 EEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAIS 300

Query: 301 GMDID 306
           GM+ID
Sbjct: 301 GMEID 304

[Close]

BLAST of Sed0012804 vs. ExPASy Swiss-Prot
Match: Q96B26 (Exosome complex component RRP43 OS=Homo sapiens OX=9606 GN=EXOSC8 PE=1 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 6.2e-46
Identity = 98/283 (34.63%), Postives = 165/283 (58.30%), Query Frame = 0


Query: 21  YRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAVKM 80
           ++ + P++++ R L E+ RPDGR LG+ R TT+ +G +S+A+GSAL K+G+TT++  VK 
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKA 64

Query: 81  EVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 140
           E   PS ++PD+G +  +  +PP+CS   R G P E A V S+ ++D I +S +I   +L
Sbjct: 65  EFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDL 124

Query: 141 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEG 200
            +  GK  W+ Y D+ CLD DG++ DA   +  AA  ++Q+P V +N++  +  V+    
Sbjct: 125 CISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVN---- 184

Query: 201 GENFEKEPVNKEKRKLKLNCIPFSLT-CLLHKKYILADPTTEEESIMETIVTVVLDSSGQ 260
                     K+K  L +   P + +  +     ++ DPT EEE +    +T+V+D  G+
Sbjct: 185 ---------LKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGK 244

Query: 261 LVSFYKPGGSVLAYSSAVQDCVALTRQRSKELQMILEEAISGM 303
           L   +KPGGS L   + +QDC++    R KE++ +++E I  M
Sbjct: 245 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVIKSM 273

[Close]

BLAST of Sed0012804 vs. ExPASy Swiss-Prot
Match: Q9D753 (Exosome complex component RRP43 OS=Mus musculus OX=10090 GN=Exosc8 PE=1 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.4e-45
Identity = 99/283 (34.98%), Postives = 163/283 (57.60%), Query Frame = 0


Query: 21  YRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAVKM 80
           ++ + P++++ R L E+ RPDGR LG+ R TT+ +G +S+A+GSAL K+G+TT++  VK 
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKA 64

Query: 81  EVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 140
           E   P +++PD G +  +  +PP+CS   R G P E A V S+ ++D + +S +I   +L
Sbjct: 65  EFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDL 124

Query: 141 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEG 200
            +  GK AW+ Y D+ CLD DG++ DA   +  AA  ++Q+P V +N++  +  V+    
Sbjct: 125 CISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVN---- 184

Query: 201 GENFEKEPVNKEKRKLKLNCIPFSLT-CLLHKKYILADPTTEEESIMETIVTVVLDSSGQ 260
                     K+K  L +   P + +  +     ++ DPT EEE +    +TVV D  G+
Sbjct: 185 ---------LKKKSYLNVRTNPVATSFAVFDDTLLIVDPTGEEEHLSTGTLTVVTDEDGK 244

Query: 261 LVSFYKPGGSVLAYSSAVQDCVALTRQRSKELQMILEEAISGM 303
           L   +KPGGS L   + +QDC++    R KE+  +L+E I  M
Sbjct: 245 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVSKLLDEVIQSM 273

[Close]

BLAST of Sed0012804 vs. ExPASy Swiss-Prot
Match: Q2KHU3 (Exosome complex component RRP43 OS=Bos taurus OX=9913 GN=EXOSC8 PE=2 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 3.7e-43
Identity = 94/283 (33.22%), Postives = 162/283 (57.24%), Query Frame = 0


Query: 21  YRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAVKM 80
           ++ + P++++ R L E+ RPDGR LG+ R TT+ +G + +A+GSAL K+G+TT++  +K 
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNVGSIGTADGSALVKLGNTTVICGIKA 64

Query: 81  EVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 140
           E   P  ++PD+G +  +  + P+CS   R G P E A V S+ ++D I +S +I   +L
Sbjct: 65  EFGAPPTDAPDKGYVVPNVDLSPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDL 124

Query: 141 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEG 200
            +  GK AW+ Y D+ CL+ DG++ DA   +  AA  ++Q+P V +N++  +  V+    
Sbjct: 125 CISSGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLPEVTINEETALAEVN---- 184

Query: 201 GENFEKEPVNKEKRKLKLNCIPFSLT-CLLHKKYILADPTTEEESIMETIVTVVLDSSGQ 260
                     K+K  L +   P + +  +     ++ DPT EEE +    +TVV+D  G+
Sbjct: 185 ---------LKKKSCLNIRTHPVATSFAVFDDTLLIVDPTEEEEHLATGTLTVVMDEEGR 244

Query: 261 LVSFYKPGGSVLAYSSAVQDCVALTRQRSKELQMILEEAISGM 303
           L   +KPGGS L   + +QDC++    R KE++ +++E    M
Sbjct: 245 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVFKSM 273

[Close]

BLAST of Sed0012804 vs. ExPASy Swiss-Prot
Match: Q8TYC2 (Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) OX=190192 GN=rrp42 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.7e-32
Identity = 85/255 (33.33%), Postives = 143/255 (56.08%), Query Frame = 0


Query: 39  RPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAVKMEVMTPSIESPDEGCIAVD 98
           R DGR   + R   +  G +S ANGSAL ++G+T ++  VK+EV  P  +SP+EG +AV+
Sbjct: 23  RIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRPYPDSPNEGALAVN 82

Query: 99  FHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCL 158
             + P+  P   PG P E A  +S+ +   I  S MIDL EL + +G+  W+ ++DI+ L
Sbjct: 83  AELVPLADPSFEPGPPDENAIELSRVVDRGIRESEMIDLEELCIEEGEHCWVTFVDIHVL 142

Query: 159 DADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKL 218
           D DG+LFDA+++ + +A S  ++P   + DD               E E + ++   L +
Sbjct: 143 DHDGNLFDASMIGSVSALSITEVPKAEVVDD---------------EVEVMEEDTEPLAI 202

Query: 219 NCIPFSLTCLLHKKYILADPTTEEESIMETIVTVVLDSSGQLVSFYKPGGSVLAY-SSAV 278
           N  P S+T     +Y+L DP  EEE IM+T +TV +  SG++ +  K  G +  +    +
Sbjct: 203 NDFPISVTIAKVGEYLLVDPCLEEEVIMDTRLTVTVTESGEVCAVQK--GELGDFPEHLL 260

Query: 279 QDCVALTRQRSKELQ 293
           +D + L  ++++E++
Sbjct: 263 EDAIDLATKKAEEVR 260

[Close]

BLAST of Sed0012804 vs. ExPASy Swiss-Prot
Match: Q10205 (Exosome complex component rrp43 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp43 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 5.1e-32
Identity = 80/267 (29.96%), Postives = 144/267 (53.93%), Query Frame = 0


Query: 21  YRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAVKM 80
           ++++ P Q+    L + +R DGR++ + R+  I    +S+ANGSA+ + G    +  +K 
Sbjct: 17  FKKITPEQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKA 76

Query: 81  EVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 140
           E+  P   SP+EG I  +  + P+CS   +PG P++ A V+S++L  T+  S +I+L+ L
Sbjct: 77  EIAEPFENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTLQQSNLINLQSL 136

Query: 141 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEG 200
            + + KAAW+ Y DI CL+ DGS FD A  +  AA   +++P    ++D + V  +    
Sbjct: 137 CIFEKKAAWVLYADIICLNYDGSAFDYAWAALFAALKTVKLPTAVWDEDLERVICA---- 196

Query: 201 GENFEKEPVNKEKRKLKLNCIPFSLTCLLHKKYILADPTTEEESIMETIVTVVLDSSGQL 260
                    +   R ++L+    S +  +    +LADPT EEE +    +T++L+SS  +
Sbjct: 197 ---------STLTRPVQLSTEVRSFSWSVFDDKLLADPTDEEEDLSTEFLTIMLNSSKNI 256

Query: 261 VSFYKPGGSVLAYSSAVQDCVALTRQR 288
           V   K GG+ +     ++ C+ + R +
Sbjct: 257 VKIIKLGGTHI-QPLLLKKCIEVARSK 269

[Close]

BLAST of Sed0012804 vs. ExPASy TrEMBL
Match: A0A1S3CEE1 (exosome complex component RRP43 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499535 PE=4 SV=1)

HSP 1 Score: 561.2 bits (1445), Expect = 2.6e-156
Identity = 286/305 (93.77%), Postives = 301/305 (98.69%), Query Frame = 0


Query: 1   MGLPNTADSGDLSSEMEVDAYRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSS 60
           MGLPN A SGDLSS+MEVDA+RRLFPIQF+ERHLAESIRPDGRALGKARDTTIALGPVSS
Sbjct: 1   MGLPNAA-SGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSS 60

Query: 61  ANGSALAKIGSTTMLAAVKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPV 120
           ANGSALAKIGSTTMLAA+KMEVMTPS+ESPDEGCIA+DFHMPP+CSPIVRPGRPAEAAPV
Sbjct: 61  ANGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPV 120

Query: 121 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 180
           ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ
Sbjct: 121 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 180

Query: 181 IPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNCIPFSLTCLLHKKYILADPTT 240
           IPVVALNDDG+VVFVSEEEGGENFEKEPVNKEKRKLKLN +PFSLTCLLHKKYILADPT 
Sbjct: 181 IPVVALNDDGRVVFVSEEEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKKYILADPTA 240

Query: 241 EEESIMETIVTVVLDSSGQLVSFYKPGGSVLAYSSAVQDCVALTRQRSKELQMILEEAIS 300
           EEES+METIVTVVLDSSGQLVSFYKPGGSVLAY+SAVQDC+ALTRQRSKELQ+IL+EAIS
Sbjct: 241 EEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAIS 300

Query: 301 GMDID 306
           GM+ID
Sbjct: 301 GMEID 304

[Close]

BLAST of Sed0012804 vs. ExPASy TrEMBL
Match: A0A1S3CD66 (exosome complex component RRP43 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499535 PE=4 SV=1)

HSP 1 Score: 561.2 bits (1445), Expect = 2.6e-156
Identity = 286/305 (93.77%), Postives = 301/305 (98.69%), Query Frame = 0


Query: 1   MGLPNTADSGDLSSEMEVDAYRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSS 60
           MGLPN A SGDLSS+MEVDA+RRLFPIQF+ERHLAESIRPDGRALGKARDTTIALGPVSS
Sbjct: 13  MGLPNAA-SGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSS 72

Query: 61  ANGSALAKIGSTTMLAAVKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPV 120
           ANGSALAKIGSTTMLAA+KMEVMTPS+ESPDEGCIA+DFHMPP+CSPIVRPGRPAEAAPV
Sbjct: 73  ANGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPV 132

Query: 121 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 180
           ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ
Sbjct: 133 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 192

Query: 181 IPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNCIPFSLTCLLHKKYILADPTT 240
           IPVVALNDDG+VVFVSEEEGGENFEKEPVNKEKRKLKLN +PFSLTCLLHKKYILADPT 
Sbjct: 193 IPVVALNDDGRVVFVSEEEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKKYILADPTA 252

Query: 241 EEESIMETIVTVVLDSSGQLVSFYKPGGSVLAYSSAVQDCVALTRQRSKELQMILEEAIS 300
           EEES+METIVTVVLDSSGQLVSFYKPGGSVLAY+SAVQDC+ALTRQRSKELQ+IL+EAIS
Sbjct: 253 EEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAIS 312

Query: 301 GMDID 306
           GM+ID
Sbjct: 313 GMEID 316

[Close]

BLAST of Sed0012804 vs. ExPASy TrEMBL
Match: A0A6J1ESF5 (exosome complex component RRP43 OS=Cucurbita moschata OX=3662 GN=LOC111435558 PE=4 SV=1)

HSP 1 Score: 560.8 bits (1444), Expect = 3.4e-156
Identity = 290/305 (95.08%), Postives = 298/305 (97.70%), Query Frame = 0


Query: 1   MGLPNTADSGDLSSEMEVDAYRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSS 60
           MGLPN A SGDLSSEMEVDA+RRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSS
Sbjct: 1   MGLPNAA-SGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSS 60

Query: 61  ANGSALAKIGSTTMLAAVKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPV 120
           ANGSALAK+GSTTMLAA+KMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPV
Sbjct: 61  ANGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPV 120

Query: 121 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 180
           ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ
Sbjct: 121 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 180

Query: 181 IPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNCIPFSLTCLLHKKYILADPTT 240
           IP VALNDDGKVVFVSEEEGGENFEKE VNKEKRKLKLN +PFSLTCLLHK YILADPT 
Sbjct: 181 IPFVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTA 240

Query: 241 EEESIMETIVTVVLDSSGQLVSFYKPGGSVLAYSSAVQDCVALTRQRSKELQMILEEAIS 300
           EEES+METIVTVVLDSSGQLVSFYKPGGSVLAY+SAVQDCVALTRQRSKELQMIL+EAIS
Sbjct: 241 EEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAIS 300

Query: 301 GMDID 306
           GM+ID
Sbjct: 301 GMEID 304

[Close]

BLAST of Sed0012804 vs. ExPASy TrEMBL
Match: A0A6J1HVL5 (exosome complex component RRP43 OS=Cucurbita maxima OX=3661 GN=LOC111467240 PE=4 SV=1)

HSP 1 Score: 558.1 bits (1437), Expect = 2.2e-155
Identity = 289/305 (94.75%), Postives = 298/305 (97.70%), Query Frame = 0


Query: 1   MGLPNTADSGDLSSEMEVDAYRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSS 60
           MGLPN A SGDLSSEMEVDA+RRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSS
Sbjct: 1   MGLPNAA-SGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSS 60

Query: 61  ANGSALAKIGSTTMLAAVKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPV 120
           ANGSALAK+GSTTMLAA+KMEVMTPSIESPDEGCIAVDFHMP ICSPIVRPGRPAEAAPV
Sbjct: 61  ANGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPSICSPIVRPGRPAEAAPV 120

Query: 121 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 180
           ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ
Sbjct: 121 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 180

Query: 181 IPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNCIPFSLTCLLHKKYILADPTT 240
           IPVVALNDDGKVVFVSEE+GGENFEKE VNKEKRKLKLN +PFSLTCLLHK YILADPT 
Sbjct: 181 IPVVALNDDGKVVFVSEEKGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTA 240

Query: 241 EEESIMETIVTVVLDSSGQLVSFYKPGGSVLAYSSAVQDCVALTRQRSKELQMILEEAIS 300
           EEES+METIVTVVLDSSGQLVSFYKPGGSVLAY+SAVQDCVALTRQRSKELQMIL+EAIS
Sbjct: 241 EEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAIS 300

Query: 301 GMDID 306
           GM+ID
Sbjct: 301 GMEID 304

[Close]

BLAST of Sed0012804 vs. ExPASy TrEMBL
Match: A0A6J1DFM7 (exosome complex component RRP43 OS=Momordica charantia OX=3673 GN=LOC111020008 PE=4 SV=1)

HSP 1 Score: 551.2 bits (1419), Expect = 2.7e-153
Identity = 284/305 (93.11%), Postives = 297/305 (97.38%), Query Frame = 0


Query: 1   MGLPNTADSGDLSSEMEVDAYRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSS 60
           MGLPN A SGDLSSEMEVDA+RRLFP+QF+ERH AESIRPDGRALGKARDTTIALGPVSS
Sbjct: 1   MGLPNAA-SGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSS 60

Query: 61  ANGSALAKIGSTTMLAAVKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPV 120
           ANGSALAKIGSTTMLAA+KMEVMTPSIESPDEGCIA+DFHMPPICSPIVRPGRPAEAAPV
Sbjct: 61  ANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPV 120

Query: 121 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 180
           ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ
Sbjct: 121 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 180

Query: 181 IPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNCIPFSLTCLLHKKYILADPTT 240
           IPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKL+ IPFSLTC+LHK +ILADPT 
Sbjct: 181 IPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTA 240

Query: 241 EEESIMETIVTVVLDSSGQLVSFYKPGGSVLAYSSAVQDCVALTRQRSKELQMILEEAIS 300
           EEESIMETIVTVVLD SGQLVSFYKPGGSVLA++SAVQDCVALTRQR KELQ+IL+EAIS
Sbjct: 241 EEESIMETIVTVVLDLSGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAIS 300

Query: 301 GMDID 306
           GM+ID
Sbjct: 301 GMEID 304

[Close]

BLAST of Sed0012804 vs. TAIR 10
Match: AT1G60080.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 443.0 bits (1138), Expect = 2.0e-124
Identity = 229/308 (74.35%), Postives = 268/308 (87.01%), Query Frame = 0


Query: 1   MGLPNTADSGDLSSEMEVDAYRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSS 60
           MG+P+ A   DLS+EMEVDA+RR+FP++FFERHL+ES+RPDGR LGKARDT + LG VS+
Sbjct: 1   MGIPDAAQ--DLSTEMEVDAFRRIFPLRFFERHLSESLRPDGRQLGKARDTIVNLGLVST 60

Query: 61  ANGSALAKIGSTTMLAAVKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPV 120
           A+GSALAKIGSTTMLAA++MEVMTPS +SPDEGCIA++FHMPPICSP VRPGRPAEAAPV
Sbjct: 61  ADGSALAKIGSTTMLAAIRMEVMTPSTDSPDEGCIAIEFHMPPICSPTVRPGRPAEAAPV 120

Query: 121 ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 180
           ISK+LSDTI SSGMIDL+EL LV GKAAWM YLDIYCLDADG+LFDAALL+A AAFS+LQ
Sbjct: 121 ISKRLSDTILSSGMIDLKELCLVSGKAAWMGYLDIYCLDADGALFDAALLAAVAAFSNLQ 180

Query: 181 IPVVALNDDGKVVFVSEEEGGEN---FEKEPVNKEKRKLKLNCIPFSLTCLLHKKYILAD 240
           IP+VALND+G++V V+ E+  +N    EKE VNKEKRKL L  IPFSLTC+LHK YILAD
Sbjct: 181 IPIVALNDNGRIVAVTGEKDQDNALITEKEAVNKEKRKLTLKNIPFSLTCILHKNYILAD 240

Query: 241 PTTEEESIMETIVTVVLDSSGQLVSFYKPGGSVLAYSSAVQDCVALTRQRSKELQMILEE 300
           PTTEEESIM+T+VTVVLDSS Q+VSFYK GG+ LAYSSA++ CV L R+R+KEL+ IL E
Sbjct: 241 PTTEEESIMDTLVTVVLDSSDQMVSFYKSGGAALAYSSAIKSCVELARKRAKELKQILGE 300

Query: 301 AISGMDID 306
               MDID
Sbjct: 301 ----MDID 302

[Close]

BLAST of Sed0012804 vs. TAIR 10
Match: AT3G07750.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 96.3 bits (238), Expect = 4.6e-20
Identity = 80/280 (28.57%), Postives = 133/280 (47.50%), Query Frame = 0


Query: 29  FFERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAVKMEVMTPSIE 88
           F +  +A+ +R DGR     R   +  G +  ANGSA  +IG T ++A+VK E+  PS  
Sbjct: 10  FIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSSL 69

Query: 89  SPDEGCIAVDFHMPPICSPIV--RPGR--PAEAAPVISKQLSDTISSSGM-IDLRELSLV 148
            PD+G +AV     P   P    R G    +E A  + + L    S +G  I+L  L + 
Sbjct: 70  QPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGINLSSLLIK 129

Query: 149 KGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGGEN 208
           +GK  W  Y+D   + +DG+L DA   +  AA ++  IP        KV   +E    E 
Sbjct: 130 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIP--------KVNVSAEVADDEQ 189

Query: 209 FEKEPVNKEKRKLKLNCIPFSLTCLLHKKYILADPTTEEESIMETIVTVVLDSSGQLVSF 268
            E +  ++E  +   + +P  +T      + + D T EEES M + V++ ++ +G +   
Sbjct: 190 PEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICGL 249

Query: 269 YKPGGSVLAYSSAVQDCVALTRQRSKELQMILEEAISGMD 304
            K  GS L   S + D +++ +  ++ L   L+  IS  +
Sbjct: 250 TKRSGSGLD-PSVILDMISVAKHVTETLMSKLDSEISAAE 280

[Close]

BLAST of Sed0012804 vs. TAIR 10
Match: AT3G07750.2 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 96.3 bits (238), Expect = 4.6e-20
Identity = 80/280 (28.57%), Postives = 133/280 (47.50%), Query Frame = 0


Query: 29  FFERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAVKMEVMTPSIE 88
           F +  +A+ +R DGR     R   +  G +  ANGSA  +IG T ++A+VK E+  PS  
Sbjct: 10  FIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSSL 69

Query: 89  SPDEGCIAVDFHMPPICSPIV--RPGR--PAEAAPVISKQLSDTISSSGM-IDLRELSLV 148
            PD+G +AV     P   P    R G    +E A  + + L    S +G  I+L  L + 
Sbjct: 70  QPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGINLSSLLIK 129

Query: 149 KGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGGEN 208
           +GK  W  Y+D   + +DG+L DA   +  AA ++  IP        KV   +E    E 
Sbjct: 130 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIP--------KVNVSAEVADDEQ 189

Query: 209 FEKEPVNKEKRKLKLNCIPFSLTCLLHKKYILADPTTEEESIMETIVTVVLDSSGQLVSF 268
            E +  ++E  +   + +P  +T      + + D T EEES M + V++ ++ +G +   
Sbjct: 190 PEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICGL 249

Query: 269 YKPGGSVLAYSSAVQDCVALTRQRSKELQMILEEAISGMD 304
            K  GS L   S + D +++ +  ++ L   L+  IS  +
Sbjct: 250 TKRSGSGLD-PSVILDMISVAKHVTETLMSKLDSEISAAE 280

The following BLAST results are available for this feature:

BLAST of Sed0012804 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023544252.1	1.9e-156	95.41	exosome complex component RRP43 [Cucurbita pepo subsp. pepo]	[more]
KAG7033523.1	4.1e-156	95.08	Exosome complex component RRP43 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_008460772.1	5.4e-156	93.77	PREDICTED: exosome complex component RRP43 isoform X1 [Cucumis melo]	[more]
XP_008460773.1	5.4e-156	93.77	PREDICTED: exosome complex component RRP43 isoform X2 [Cucumis melo] >XP_0084607...	[more]
XP_022928740.1	7.0e-156	95.08	exosome complex component RRP43 [Cucurbita moschata]	[more]

BLAST of Sed0012804 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96B26	6.2e-46	34.63	Exosome complex component RRP43 OS=Homo sapiens OX=9606 GN=EXOSC8 PE=1 SV=1	[more]
Q9D753	1.4e-45	34.98	Exosome complex component RRP43 OS=Mus musculus OX=10090 GN=Exosc8 PE=1 SV=1	[more]
Q2KHU3	3.7e-43	33.22	Exosome complex component RRP43 OS=Bos taurus OX=9913 GN=EXOSC8 PE=2 SV=1	[more]
Q8TYC2	1.7e-32	33.33	Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324...	[more]
Q10205	5.1e-32	29.96	Exosome complex component rrp43 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]

BLAST of Sed0012804 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CEE1	2.6e-156	93.77	exosome complex component RRP43 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034995...	[more]
A0A1S3CD66	2.6e-156	93.77	exosome complex component RRP43 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034995...	[more]
A0A6J1ESF5	3.4e-156	95.08	exosome complex component RRP43 OS=Cucurbita moschata OX=3662 GN=LOC111435558 PE...	[more]
A0A6J1HVL5	2.2e-155	94.75	exosome complex component RRP43 OS=Cucurbita maxima OX=3661 GN=LOC111467240 PE=4...	[more]
A0A6J1DFM7	2.7e-153	93.11	exosome complex component RRP43 OS=Momordica charantia OX=3673 GN=LOC111020008 P...	[more]

BLAST of Sed0012804 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60080.1	2.0e-124	74.35	3'-5'-exoribonuclease family protein	[more]
AT3G07750.1	4.6e-20	28.57	3'-5'-exoribonuclease family protein	[more]
AT3G07750.2	4.6e-20	28.57	3'-5'-exoribonuclease family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 49..182 e-value: 5.4E-22 score: 78.7
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	3.30.230.70		coord: 17..304 e-value: 2.1E-82 score: 278.6
None	No IPR available	PANTHER	PTHR11097:SF28	SUBFAMILY NOT NAMED	coord: 15..305
None	No IPR available	PANTHER	PTHR11097	EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN	coord: 15..305
None	No IPR available	CDD	cd11369	RNase_PH_RRP43	coord: 22..295 e-value: 1.84087E-115 score: 331.829
IPR036345	Exoribonuclease, PH domain 2 superfamily	SUPERFAMILY	55666	Ribonuclease PH domain 2-like	coord: 216..299
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 19..244

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0012804.1	Sed0012804.1	mRNA