Sed0012595 (gene) Chayote v1

Overview


Name	Sed0012595
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING/U-box superfamily protein
Location	LG09: 3774639 .. 3776246 (+)
RNA-Seq Expression	Sed0012595
Synteny	Sed0012595

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAACATATTGAAGAAACCAATCCCCATATGTCCAGTTCTCAAAACCCTAGAACAAGATCAAAATTTCCAATCCATAACATTTCAACATGATTGCCAACTATGCCATTTACCAATCTTCTCCCCCTCATCAAAATTCACCAATGACAGCAATTGCCATCACACCATATGCATAGAATGCATTTCCGACCACATCGACTCAAAGCTTGAGACTAACGCCGTTGAGATCACCTGCCCCGGCCCCGACTGCAAGGCGGTTCTCGACCCAGTCTTGTGCCGTGACATTGTCGAGACCCTGCCCTACAACCAGTGGCTGGACCGCCTTTGCTACGCTGCAATCCTCAGGCGGGAGAAATGCTATTGCCCACATGGGAATTGTAGGGCATTGATCGTCGACGAATGCTGCGACAGAGAATCGGTTCCGAGGAAGTCAAAGTGCCCGGAATGCAAGAAGTGGTTTTGCTTCTTGTGCCGGACGGTGTGGCACGAAGGGCAGAATTGCGATTTGAGTAGAGGAAGGGAGATGATAAGTTTGAATGATATGTTGTTCATGGGAATGACTGTGGGGTTTTACAAGAAGTTTTCTTGTTGCCCTAAATGCAGATCGTTTACTGAGCTCAATAGAAAAACTGGCTTCTGCATTGTGAGATGCAGGTTTTTTCTTCTCTCTTTATATTCTCATATATGTTTGATTATGTTTTTATTTATTGTTGTGATTATTTTCTTTAGGGTTAGCCTATTTTTATAATATCTCTCGTGTTTTCGTTCTTTTTTATTACTTGGGAACTTGGAGTTTCGCTTCTTGAAATCCGATAGCATCGGTAGATAACCGGAACTCCCCCATTCGACGTGTGAAACTGGAATGCAAGTTGCATGATGGATTGATTCCCAACCTCTAGAGGACCATCTTTTTCTTTTCTTATTTGTAATGTTTTTGTTTCTTATTTTGATTATTTTTTTTAAAAACCAGATTTTGATGGATTTTTTTTATAATTAGAGGTGTAATCAAACCCATATTTTTTGGTTCATAAGTATAATTTACAATCTCCACATAGTTGTTTAACTTGGTAGTTTTGTTATGATCTTGGCTAAATGAAAATAGACTATAATTTTGTTTTTAGTTTTCTCTATTTGTGAGATGCTCTTTGAAAACTTCTAGTTATCATTTCTATATTTTCTTTTTTCTTTTTCTTTTTTTTTGAAAAACAATTATTCATAACAACTGTATGTGAGACATATACAAATAGTTAGGATTGTATTGTTTCACTACATCTAATTTCTTTGTGTTTTTCTGTTAGGATTTTATTGTTTCATTTTTGAAGTTATTTTTTGTTTTTTAGAATTGATATTTTACGAATTTAGTCTTACGTTTTAAAAAAGTTTTGATCTTAGGATTTAAATATTGTTTTGACTTTTAGTAAATTTAATGTAGAAGAAAAAATAGATTCAGAATTTTAAAGTTAAACTTATTTCACTTTTGAATATAGTAAAAAAAAATTAACTACACTAACTTGAAAGGTGAATTAGTTTTTGGCATTTTTGCTATATTAAAAAAAGAGCAATACTTTCCTGTTGGAAATTCTATAGGGAGCCCAGAGACTATTAG

mRNA sequence

ATGGGCAACATATTGAAGAAACCAATCCCCATATGTCCAGTTCTCAAAACCCTAGAACAAGATCAAAATTTCCAATCCATAACATTTCAACATGATTGCCAACTATGCCATTTACCAATCTTCTCCCCCTCATCAAAATTCACCAATGACAGCAATTGCCATCACACCATATGCATAGAATGCATTTCCGACCACATCGACTCAAAGCTTGAGACTAACGCCGTTGAGATCACCTGCCCCGGCCCCGACTGCAAGGCGGTTCTCGACCCAGTCTTGTGCCGTGACATTGTCGAGACCCTGCCCTACAACCAGTGGCTGGACCGCCTTTGCTACGCTGCAATCCTCAGGCGGGAGAAATGCTATTGCCCACATGGGAATTGTAGGGCATTGATCGTCGACGAATGCTGCGACAGAGAATCGGTTCCGAGGAAGTCAAAGTGCCCGGAATGCAAGAAGTGGTTTTGCTTCTTGTGCCGGACGGTGTGGCACGAAGGGCAGAATTGCGATTTGAGTAGAGGAAGGGAGATGATAAGTTTGAATGATATGTTGTTCATGGGAATGACTGTGGGGTTTTACAAGAAGTTTTCTTGTTGCCCTAAATGCAGATCGTTTACTGAGCTCAATAGAAAAACTGGCTTCTGCATTGTGAGATGCAGTTTTTGGCATTTTTGCTATATTAAAAAAAGAGCAATACTTTCCTGTTGGAAATTCTATAGGGAGCCCAGAGACTATTAG

Coding sequence (CDS)

ATGGGCAACATATTGAAGAAACCAATCCCCATATGTCCAGTTCTCAAAACCCTAGAACAAGATCAAAATTTCCAATCCATAACATTTCAACATGATTGCCAACTATGCCATTTACCAATCTTCTCCCCCTCATCAAAATTCACCAATGACAGCAATTGCCATCACACCATATGCATAGAATGCATTTCCGACCACATCGACTCAAAGCTTGAGACTAACGCCGTTGAGATCACCTGCCCCGGCCCCGACTGCAAGGCGGTTCTCGACCCAGTCTTGTGCCGTGACATTGTCGAGACCCTGCCCTACAACCAGTGGCTGGACCGCCTTTGCTACGCTGCAATCCTCAGGCGGGAGAAATGCTATTGCCCACATGGGAATTGTAGGGCATTGATCGTCGACGAATGCTGCGACAGAGAATCGGTTCCGAGGAAGTCAAAGTGCCCGGAATGCAAGAAGTGGTTTTGCTTCTTGTGCCGGACGGTGTGGCACGAAGGGCAGAATTGCGATTTGAGTAGAGGAAGGGAGATGATAAGTTTGAATGATATGTTGTTCATGGGAATGACTGTGGGGTTTTACAAGAAGTTTTCTTGTTGCCCTAAATGCAGATCGTTTACTGAGCTCAATAGAAAAACTGGCTTCTGCATTGTGAGATGCAGTTTTTGGCATTTTTGCTATATTAAAAAAAGAGCAATACTTTCCTGTTGGAAATTCTATAGGGAGCCCAGAGACTATTAG

Protein sequence

MGNILKKPIPICPVLKTLEQDQNFQSITFQHDCQLCHLPIFSPSSKFTNDSNCHHTICIECISDHIDSKLETNAVEITCPGPDCKAVLDPVLCRDIVETLPYNQWLDRLCYAAILRREKCYCPHGNCRALIVDECCDRESVPRKSKCPECKKWFCFLCRTVWHEGQNCDLSRGREMISLNDMLFMGMTVGFYKKFSCCPKCRSFTELNRKTGFCIVRCSFWHFCYIKKRAILSCWKFYREPRDY

Homology

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BLAST of Sed0012595 vs. NCBI nr
Match: XP_015082762.1 (probable E3 ubiquitin-protein ligase RNF217 [Solanum pennellii])

HSP 1 Score: 170.6 bits (431), Expect = 1.6e-38
Identity = 88/225 (39.11%), Postives = 126/225 (56.00%), Query Frame = 0


Query: 1   MGNILKKPIPICPVLKTLEQDQNFQSITFQHDCQLCHLPIFSPSSKFTNDSNCHHTICIE 60
           MGN LKK            Q+      +    C++C  P+  PS+KF N + C H  CI+
Sbjct: 1   MGNALKK-----------FQEHELADESQPFCCKICMEPMLLPSTKFKNQNLCVHPFCID 60

Query: 61  CISDHIDSKLETNAVEITCPGPDCKAVLDPVLCRDIVETLPYNQWLDRLCYAAILRREKC 120
           CI+ +I  KL  N VEI CP P+C   LDP+ CR+++++  +++W ++LC  ++L   +C
Sbjct: 61  CITTYISVKLVDNVVEIPCPFPNCNHFLDPIGCRNLMDSDLFDKWSEKLCEYSVLGLTRC 120

Query: 121 YCPHGNCRALIVDECCDRESVPRKSKCPECKKWFCFLCRTVWHEGQNCDLSRGREMISLN 180
           YCP+ NC ALI+DEC     V   SKCP CK+ FCF C+  WH G  C+ S    +   N
Sbjct: 121 YCPYQNCSALILDEC---GGVATLSKCPNCKRLFCFRCKIPWHAGFQCEESGA--LRDEN 180

Query: 181 DMLFMGMTVGFYKKFSCCPKCRSFTELNRKTGFCIVRCSFWHFCY 226
           D  F GM +   +K+  CPKCRSF +L+    +   RC   +FCY
Sbjct: 181 DFTF-GM-LAEREKWQRCPKCRSFVQLSEGCRYITCRCQA-NFCY 206

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BLAST of Sed0012595 vs. NCBI nr
Match: PHT93504.1 (hypothetical protein T459_01386 [Capsicum annuum])

HSP 1 Score: 170.2 bits (430), Expect = 2.1e-38
Identity = 87/235 (37.02%), Postives = 122/235 (51.91%), Query Frame = 0


Query: 1   MGNILKKPIPICPVLKTLEQDQNFQSITFQHDCQLCHLPIFSPSSKFTNDSNCHHTICIE 60
           MGN L+K            Q+Q     +    C++C  P+  P+ KF N + C H  CI+
Sbjct: 1   MGNTLQK--------TDQNQEQELPDESEPFTCEICIEPMLLPNKKFNNQNRCVHPFCID 60

Query: 61  CISDHIDSKLETNAVEITCPGPDCKAVLDPVLCRDIVETLPYNQWLDRLCYAAILRREKC 120
           CI  +I  KLE N  +I CP   C   LDP+ CR++V    + +W D LC +++L   +C
Sbjct: 61  CIVKYISVKLEDNVGKIPCPSLSCDQFLDPISCRNLVGPQLFVKWSDVLCESSVLGVPQC 120

Query: 121 YCPHGNCRALIVDECCDRESVPRKSKCPECKKWFCFLCRTVWHEGQNCDLSRGREMISLN 180
           YCPH NC ALI+DEC       ++S+CP CK+ FCF C+  WH G  C+    RE+   N
Sbjct: 121 YCPHRNCSALILDECGGN---AKRSQCPNCKRSFCFKCKLPWHAGFQCE--ENRELRDTN 180

Query: 181 DMLFMGMTVGFYKKFSCCPKCRSFTELNRKTGFCIVRCSFWHFCYIKKRAILSCW 236
           D++F    +   KK+  CP CR F EL+        RC   +FCY   R +   W
Sbjct: 181 DVVF--GVLAELKKWKRCPLCRHFVELSEGCKIVKCRCGA-NFCYSCGRRVYRHW 219

[Close]

BLAST of Sed0012595 vs. NCBI nr
Match: XP_006362044.1 (PREDICTED: probable E3 ubiquitin-protein ligase RNF217 [Solanum tuberosum])

HSP 1 Score: 169.9 bits (429), Expect = 2.8e-38
Identity = 80/193 (41.45%), Postives = 116/193 (60.10%), Query Frame = 0


Query: 33  CQLCHLPIFSPSSKFTNDSNCHHTICIECISDHIDSKLETNAVEITCPGPDCKAVLDPVL 92
           C++C  P+  PS+KF N + C H  CI+CI+ +I  KL  N +EI CP P C   LDP+ 
Sbjct: 22  CKICMEPLLLPSTKFKNQNLCVHPFCIDCITRYISVKLVDNVIEIPCPFPTCNQFLDPIG 81

Query: 93  CRDIVETLPYNQWLDRLCYAAILRREKCYCPHGNCRALIVDECCDRESVPRKSKCPECKK 152
           CR++V++  +++W ++LC  ++L   +CYCP+ NC ALI+DEC     V  +SKCP CK+
Sbjct: 82  CRNLVDSELFDKWSEKLCEYSVLGLTRCYCPNRNCSALILDEC---GGVATRSKCPNCKR 141

Query: 153 WFCFLCRTVWHEGQNCDLSRGREMISLNDMLFMGMTVGFYKKFSCCPKCRSFTELNRKTG 212
            FCF C+  WH    C+ S    +   ND++F  +     KK+  CPKCRSF +L+    
Sbjct: 142 LFCFQCKLPWHAVFQCEESGA--LRDKNDVVFGKLAE--RKKWQRCPKCRSFVQLSDGCR 201

Query: 213 FCIVRCSFWHFCY 226
           F   RC   +FCY
Sbjct: 202 FITCRCRA-NFCY 206

[Close]

BLAST of Sed0012595 vs. NCBI nr
Match: PHU10691.1 (hypothetical protein BC332_22551 [Capsicum chinense])

HSP 1 Score: 169.5 bits (428), Expect = 3.7e-38
Identity = 86/235 (36.60%), Postives = 122/235 (51.91%), Query Frame = 0


Query: 1   MGNILKKPIPICPVLKTLEQDQNFQSITFQHDCQLCHLPIFSPSSKFTNDSNCHHTICIE 60
           MGN L+K            Q+Q     +    C++C  P+  P+ KF N + C H  CI+
Sbjct: 1   MGNTLQK--------TDQNQEQELPDESEPFTCEICIEPMLLPNKKFNNQNRCVHPFCID 60

Query: 61  CISDHIDSKLETNAVEITCPGPDCKAVLDPVLCRDIVETLPYNQWLDRLCYAAILRREKC 120
           CI  +I  K+E N  +I CP   C   LDP+ CR++V    + +W D LC +++L   +C
Sbjct: 61  CIVKYISVKIEDNVGKIPCPSLSCDQFLDPISCRNLVGPQLFVKWSDVLCESSVLGVPQC 120

Query: 121 YCPHGNCRALIVDECCDRESVPRKSKCPECKKWFCFLCRTVWHEGQNCDLSRGREMISLN 180
           YCPH NC ALI+DEC       ++S+CP CK+ FCF C+  WH G  C+    RE+   N
Sbjct: 121 YCPHRNCSALILDECGGN---AKRSQCPNCKRSFCFKCKLPWHAGFQCE--ENRELRDTN 180

Query: 181 DMLFMGMTVGFYKKFSCCPKCRSFTELNRKTGFCIVRCSFWHFCYIKKRAILSCW 236
           D++F    +   KK+  CP CR F EL+        RC   +FCY   R +   W
Sbjct: 181 DVVF--GVLAELKKWKRCPLCRHFVELSEGCKIVKCRCGA-NFCYSCGRRVYRHW 219

[Close]

BLAST of Sed0012595 vs. NCBI nr
Match: XP_016539808.1 (PREDICTED: probable E3 ubiquitin-protein ligase RNF217 isoform X1 [Capsicum annuum] >KAF3618646.1 putative purple acid phosphatase 2-like [Capsicum annuum])

HSP 1 Score: 169.1 bits (427), Expect = 4.8e-38
Identity = 86/235 (36.60%), Postives = 122/235 (51.91%), Query Frame = 0


Query: 1   MGNILKKPIPICPVLKTLEQDQNFQSITFQHDCQLCHLPIFSPSSKFTNDSNCHHTICIE 60
           MGN L+K            Q+Q     +    C++C  P+  P+ KF N + C H  CI+
Sbjct: 1   MGNTLQK--------TDQNQEQELPDESEPFTCEICIEPMLLPNKKFNNQNRCVHPFCID 60

Query: 61  CISDHIDSKLETNAVEITCPGPDCKAVLDPVLCRDIVETLPYNQWLDRLCYAAILRREKC 120
           CI  +I  KLE N  +I CP   C   LDP+ CR++V    + +W D LC +++L   +C
Sbjct: 61  CIVKYISVKLEDNVGKIPCPSLSCDQFLDPISCRNLVGPQLFVKWSDVLCESSVLGVPQC 120

Query: 121 YCPHGNCRALIVDECCDRESVPRKSKCPECKKWFCFLCRTVWHEGQNCDLSRGREMISLN 180
           YCPH NC ALI+DEC       ++S+CP CK+ FCF C+  WH G  C+    RE+   N
Sbjct: 121 YCPHRNCSALILDECGGN---AKRSQCPNCKRSFCFKCKLPWHAGFQCE--ENRELRDTN 180

Query: 181 DMLFMGMTVGFYKKFSCCPKCRSFTELNRKTGFCIVRCSFWHFCYIKKRAILSCW 236
           D++F    +   KK+  CP CR F EL+        RC   +FCY   + +   W
Sbjct: 181 DVVF--GVLAELKKWKRCPLCRHFVELSEGCKIVKCRCGA-NFCYSCGKRVYRHW 219

[Close]

BLAST of Sed0012595 vs. ExPASy Swiss-Prot
Match: Q08B84 (E3 ubiquitin-protein ligase RNF19B OS=Xenopus laevis OX=8355 GN=rnf19b PE=2 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 6.1e-12
Identity = 53/210 (25.24%), Postives = 89/210 (42.38%), Query Frame = 0


Query: 32  DCQLCHLPIFSPSSKFTNDSNCHHTICIECISDHIDSKLETNAVEITCPGPDCKAVLDP- 91
           +C LC   +  P  +     +C H  C+ C+  ++  ++  + V + C  P+C   L P 
Sbjct: 94  ECPLC--LVRQPPEEIPELLSCRHRSCLRCLRQYLRIEICESRVNLRC--PECAERLSPQ 153

Query: 92  ---VLCRDIVETLPYNQWLDRLCYAAILRREKCYCPHGNCRALIVDECCDRESVPRKSKC 151
               + RD + T  Y ++L R C AA    +  +CP  +C   ++   C   S P+ +  
Sbjct: 154 HVRAILRDPLLTRKYEEFLLRRCLAA--DPDCRWCPAPDCGYAVIAYGC--ASCPKLTCE 213

Query: 152 PE-CKKWFCFLCRTVWHEGQNCDLSRGREMISLN------DMLFMGMTVGFYKKFSCCPK 211
            E C+  FC+ C+ VWH  Q CD++R +   SL         +  G   G       CP+
Sbjct: 214 REGCRTEFCYHCKHVWHPNQTCDMARQQRAPSLGVRRKHPSGISYGQESGSADDMKSCPR 273

Query: 212 CRSFTELNRKTGFC------IVRCSFWHFC 225
           C ++  +    G C      +  C F   C
Sbjct: 274 CSAYI-IKMNDGSCNHMTCSVCGCEFCWLC 294

[Close]

BLAST of Sed0012595 vs. ExPASy Swiss-Prot
Match: Q6ZMZ0 (E3 ubiquitin-protein ligase RNF19B OS=Homo sapiens OX=9606 GN=RNF19B PE=1 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 1.4e-08
Identity = 48/208 (23.08%), Postives = 86/208 (41.35%), Query Frame = 0


Query: 32  DCQLCHLPIFSPSSKFTNDSNCHHTICIECISDHIDSKLETNAVEITCPGPDCKAVLDPV 91
           +C LC + +  P  +     +C H  C +C+  ++  ++  + V I+C  P+C   L+P 
Sbjct: 118 ECPLCLVRL--PPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISC--PECSERLNPH 177

Query: 92  LCRDIVETLPYNQWLDRLCYAAILRRE-KC-YCPHGNCRALIVDECCDRESVPRKSKCPE 151
             R ++   P     +       L  +  C +CP  +C   ++   C   S P+ +   E
Sbjct: 178 DIRLLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGYAVIAYGC--ASCPKLTCERE 237

Query: 152 -CKKWFCFLCRTVWHEGQNCDLSRGREMISL------NDMLFMGMTVGFYKKFSCCPKCR 211
            C+  FC+ C+ +WH  Q CD++R +   +L         L  G   G       CP+C 
Sbjct: 238 GCQTEFCYHCKQIWHPNQTCDMARQQRAQTLRVRTKHTSGLSYGQESGPADDIKPCPRCS 297

Query: 212 SFTELNRKTGFC------IVRCSFWHFC 225
           ++  +    G C      +  C F   C
Sbjct: 298 AYI-IKMNDGSCNHMTCAVCGCEFCWLC 318

[Close]

BLAST of Sed0012595 vs. ExPASy Swiss-Prot
Match: A2A7Q9 (E3 ubiquitin-protein ligase RNF19B OS=Mus musculus OX=10090 GN=Rnf19b PE=1 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 1.4e-08
Identity = 48/208 (23.08%), Postives = 86/208 (41.35%), Query Frame = 0


Query: 32  DCQLCHLPIFSPSSKFTNDSNCHHTICIECISDHIDSKLETNAVEITCPGPDCKAVLDPV 91
           +C LC + +  P  +     +C H  C +C+  ++  ++  + V I+C  P+C   L+P 
Sbjct: 115 ECPLCLVRL--PPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISC--PECSERLNPH 174

Query: 92  LCRDIVETLPYNQWLDRLCYAAILRRE-KC-YCPHGNCRALIVDECCDRESVPRKSKCPE 151
             R ++   P     +       L  +  C +CP  +C   ++   C   S P+ +   E
Sbjct: 175 DIRLLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGYAVIAYGC--ASCPKLTCERE 234

Query: 152 -CKKWFCFLCRTVWHEGQNCDLSRGREMISL------NDMLFMGMTVGFYKKFSCCPKCR 211
            C+  FC+ C+ +WH  Q CD++R +   +L         L  G   G       CP+C 
Sbjct: 235 GCQTEFCYHCKQIWHPNQTCDMARQQRAQTLRVRTKHTSGLSYGQESGPADDIKPCPRCS 294

Query: 212 SFTELNRKTGFC------IVRCSFWHFC 225
           ++  +    G C      +  C F   C
Sbjct: 295 AYI-IKMNDGSCNHMTCAVCGCEFCWLC 315

[Close]

BLAST of Sed0012595 vs. ExPASy TrEMBL
Match: A0A2G3AH05 (Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_01386 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.0e-38
Identity = 87/235 (37.02%), Postives = 122/235 (51.91%), Query Frame = 0


Query: 1   MGNILKKPIPICPVLKTLEQDQNFQSITFQHDCQLCHLPIFSPSSKFTNDSNCHHTICIE 60
           MGN L+K            Q+Q     +    C++C  P+  P+ KF N + C H  CI+
Sbjct: 1   MGNTLQK--------TDQNQEQELPDESEPFTCEICIEPMLLPNKKFNNQNRCVHPFCID 60

Query: 61  CISDHIDSKLETNAVEITCPGPDCKAVLDPVLCRDIVETLPYNQWLDRLCYAAILRREKC 120
           CI  +I  KLE N  +I CP   C   LDP+ CR++V    + +W D LC +++L   +C
Sbjct: 61  CIVKYISVKLEDNVGKIPCPSLSCDQFLDPISCRNLVGPQLFVKWSDVLCESSVLGVPQC 120

Query: 121 YCPHGNCRALIVDECCDRESVPRKSKCPECKKWFCFLCRTVWHEGQNCDLSRGREMISLN 180
           YCPH NC ALI+DEC       ++S+CP CK+ FCF C+  WH G  C+    RE+   N
Sbjct: 121 YCPHRNCSALILDECGGN---AKRSQCPNCKRSFCFKCKLPWHAGFQCE--ENRELRDTN 180

Query: 181 DMLFMGMTVGFYKKFSCCPKCRSFTELNRKTGFCIVRCSFWHFCYIKKRAILSCW 236
           D++F    +   KK+  CP CR F EL+        RC   +FCY   R +   W
Sbjct: 181 DVVF--GVLAELKKWKRCPLCRHFVELSEGCKIVKCRCGA-NFCYSCGRRVYRHW 219

[Close]

BLAST of Sed0012595 vs. ExPASy TrEMBL
Match: A0A2G3BW23 (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_22551 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.8e-38
Identity = 86/235 (36.60%), Postives = 122/235 (51.91%), Query Frame = 0


Query: 1   MGNILKKPIPICPVLKTLEQDQNFQSITFQHDCQLCHLPIFSPSSKFTNDSNCHHTICIE 60
           MGN L+K            Q+Q     +    C++C  P+  P+ KF N + C H  CI+
Sbjct: 1   MGNTLQK--------TDQNQEQELPDESEPFTCEICIEPMLLPNKKFNNQNRCVHPFCID 60

Query: 61  CISDHIDSKLETNAVEITCPGPDCKAVLDPVLCRDIVETLPYNQWLDRLCYAAILRREKC 120
           CI  +I  K+E N  +I CP   C   LDP+ CR++V    + +W D LC +++L   +C
Sbjct: 61  CIVKYISVKIEDNVGKIPCPSLSCDQFLDPISCRNLVGPQLFVKWSDVLCESSVLGVPQC 120

Query: 121 YCPHGNCRALIVDECCDRESVPRKSKCPECKKWFCFLCRTVWHEGQNCDLSRGREMISLN 180
           YCPH NC ALI+DEC       ++S+CP CK+ FCF C+  WH G  C+    RE+   N
Sbjct: 121 YCPHRNCSALILDECGGN---AKRSQCPNCKRSFCFKCKLPWHAGFQCE--ENRELRDTN 180

Query: 181 DMLFMGMTVGFYKKFSCCPKCRSFTELNRKTGFCIVRCSFWHFCYIKKRAILSCW 236
           D++F    +   KK+  CP CR F EL+        RC   +FCY   R +   W
Sbjct: 181 DVVF--GVLAELKKWKRCPLCRHFVELSEGCKIVKCRCGA-NFCYSCGRRVYRHW 219

[Close]

BLAST of Sed0012595 vs. ExPASy TrEMBL
Match: A0A2G2XNK6 (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_01439 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 2.3e-38
Identity = 86/235 (36.60%), Postives = 122/235 (51.91%), Query Frame = 0


Query: 1   MGNILKKPIPICPVLKTLEQDQNFQSITFQHDCQLCHLPIFSPSSKFTNDSNCHHTICIE 60
           MGN L+K            Q+Q     +    C++C  P+  P+ KF N + C H  CI+
Sbjct: 1   MGNTLQK--------TDQNQEQELPDESEPFTCEICIEPMLLPNKKFNNQNRCVHPFCID 60

Query: 61  CISDHIDSKLETNAVEITCPGPDCKAVLDPVLCRDIVETLPYNQWLDRLCYAAILRREKC 120
           CI  +I  KLE N  +I CP   C   LDP+ CR++V    + +W D LC +++L   +C
Sbjct: 61  CIVKYISVKLEDNVGKIPCPSLSCDQFLDPISCRNLVGPQLFVKWSDVLCESSVLGVPQC 120

Query: 121 YCPHGNCRALIVDECCDRESVPRKSKCPECKKWFCFLCRTVWHEGQNCDLSRGREMISLN 180
           YCPH NC ALI+DEC       ++S+CP CK+ FCF C+  WH G  C+    RE+   N
Sbjct: 121 YCPHRNCSALILDECGGN---AKRSQCPNCKRSFCFKCKLPWHAGFQCE--ENRELRDTN 180

Query: 181 DMLFMGMTVGFYKKFSCCPKCRSFTELNRKTGFCIVRCSFWHFCYIKKRAILSCW 236
           D++F    +   KK+  CP CR F EL+        RC   +FCY   + +   W
Sbjct: 181 DVVF--GVLAELKKWKRCPLCRHFVELSEGCKIVKCRCGA-NFCYSCGKRVYRHW 219

[Close]

BLAST of Sed0012595 vs. ExPASy TrEMBL
Match: A0A1U8DXQ3 (probable E3 ubiquitin-protein ligase RNF217 isoform X1 OS=Capsicum annuum OX=4072 GN=LOC107840457 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 2.3e-38
Identity = 86/235 (36.60%), Postives = 122/235 (51.91%), Query Frame = 0


Query: 1   MGNILKKPIPICPVLKTLEQDQNFQSITFQHDCQLCHLPIFSPSSKFTNDSNCHHTICIE 60
           MGN L+K            Q+Q     +    C++C  P+  P+ KF N + C H  CI+
Sbjct: 1   MGNTLQK--------TDQNQEQELPDESEPFTCEICIEPMLLPNKKFNNQNRCVHPFCID 60

Query: 61  CISDHIDSKLETNAVEITCPGPDCKAVLDPVLCRDIVETLPYNQWLDRLCYAAILRREKC 120
           CI  +I  KLE N  +I CP   C   LDP+ CR++V    + +W D LC +++L   +C
Sbjct: 61  CIVKYISVKLEDNVGKIPCPSLSCDQFLDPISCRNLVGPQLFVKWSDVLCESSVLGVPQC 120

Query: 121 YCPHGNCRALIVDECCDRESVPRKSKCPECKKWFCFLCRTVWHEGQNCDLSRGREMISLN 180
           YCPH NC ALI+DEC       ++S+CP CK+ FCF C+  WH G  C+    RE+   N
Sbjct: 121 YCPHRNCSALILDECGGN---AKRSQCPNCKRSFCFKCKLPWHAGFQCE--ENRELRDTN 180

Query: 181 DMLFMGMTVGFYKKFSCCPKCRSFTELNRKTGFCIVRCSFWHFCYIKKRAILSCW 236
           D++F    +   KK+  CP CR F EL+        RC   +FCY   + +   W
Sbjct: 181 DVVF--GVLAELKKWKRCPLCRHFVELSEGCKIVKCRCGA-NFCYSCGKRVYRHW 219

[Close]

BLAST of Sed0012595 vs. ExPASy TrEMBL
Match: A0A6I9U6L5 (E3 ubiquitin-protein ligase RNF144B-like isoform X1 OS=Sesamum indicum OX=4182 GN=LOC105172912 PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 3.0e-38
Identity = 95/241 (39.42%), Postives = 123/241 (51.04%), Query Frame = 0


Query: 1   MGNILKKPIPICPVLKTLEQDQNFQSI-----TFQHDCQLCHLPIFSPSSKFTNDSNCHH 60
           MGN L+ P  + P     +Q Q  Q I       +  C++C  P  +   KFTN + C H
Sbjct: 1   MGNTLQAPPQVLPP----QQPQQHQKIAGGEENQEFTCEICIEPTSNADKKFTNTNRCSH 60

Query: 61  TICIECISDHIDSKLE-TNAVEITCPGPDCKAVLDPVLCRDIVETLPYNQWLDRLCYAAI 120
             C +C+  +I  KLE  N   I CP  +C   LDP+ C  +V    + +W D LC AAI
Sbjct: 61  PFCTDCMIKYIRVKLEDDNVGHIKCPAFNCDHTLDPLACASLVGPSLFVRWCDVLCEAAI 120

Query: 121 LRREKCYCPHGNCRALIVDECCDRESVPRKSKCPECKKWFCFLCRTVWHEGQNCDLSRGR 180
           +  +KCYCPH NC ALIV+EC       +KS CP C++WFCF C+ VWH G  CD S   
Sbjct: 121 VGFDKCYCPHRNCNALIVNECGGN---VKKSNCPNCRRWFCFQCKRVWHAGFGCDES--G 180

Query: 181 EMISLNDMLFMGMTVGFYKKFSCCPKCRSFTELNRKTGFCIVRCSFWHFCYIKKRAILSC 236
           E+   NDM F G  V   KK+  CP+CR F EL         RC    FCY   + +   
Sbjct: 181 ELRDRNDMAF-GRLVE-QKKWMRCPRCRHFVELLEGCQIVKCRCGI-SFCYKCGKQVHQH 229

[Close]

BLAST of Sed0012595 vs. TAIR 10
Match: AT3G53690.1 (RING/U-box superfamily protein )

HSP 1 Score: 120.9 bits (302), Expect = 1.4e-27
Identity = 70/218 (32.11%), Postives = 105/218 (48.17%), Query Frame = 0


Query: 19  EQDQNFQSITFQHDCQLCHLPIFSPSSKFTNDS----NCHHTICIECISDHIDSKLETNA 78
           E+ Q+  S T   DC++C        SK   +S     C H  C +C+S +I +KL+ N 
Sbjct: 101 EKGQSSSSKTATFDCEIC------VDSKSIIESFRIGGCSHFYCNDCVSKYIAAKLQDNI 160

Query: 79  VEITCPGPDCKAVLDPVLCRDIVETLPYNQWLDRLCYAAILRREKCYCPHGNCRALIVDE 138
           + I CP   C   L+P  CR I+    +++W D LC A ++R +K YCP+ +C AL+  E
Sbjct: 161 LSIECPVSGCSGRLEPDQCRQILPKEVFDRWGDALCEAVVMRSKKFYCPYKDCSALVFLE 220

Query: 139 CCDRESVPRKSKCPECKKWFCFLCRTVWHEGQNCD-------LSRGREMISLNDMLFMGM 198
             + E   + S+CP C +  C  C T WH    C+         RGR+ I L        
Sbjct: 221 --ESEVKMKDSECPHCHRMVCVECGTQWHPEMTCEEFQKLAANERGRDDILL-------A 280

Query: 199 TVGFYKKFSCCPKCRSFTELNRKTGFCIVRCSFWHFCY 226
           T+   KK+  CP C+ + E ++   +   RC    FCY
Sbjct: 281 TMAKQKKWKRCPSCKFYIEKSQGCLYMKCRCGL-AFCY 302

[Close]

BLAST of Sed0012595 vs. TAIR 10
Match: AT3G14250.1 (RING/U-box superfamily protein )

HSP 1 Score: 104.0 bits (258), Expect = 1.8e-22
Identity = 54/198 (27.27%), Postives = 95/198 (47.98%), Query Frame = 0


Query: 33  CQLCHLPIFSPSSKFTNDSNCHHTICIECISDHIDSKLETNAVEITCPGPDCKAVLDPVL 92
           C +C +     S  F   +NC H  C +C   ++ +K++ NA  I CP  +C  +++P  
Sbjct: 95  CMIC-MDEKPSSDIFRGTTNCTHAYCTDCTVRYVATKIKENASRIKCPDVECTRLIEPYT 154

Query: 93  CRDIVETLPYNQWLDRLCYAAILRREKCYCPHGNCRALIVDECCDRESVPRKSKCPECKK 152
           CRD++    +++W   LC + I   +K YCP  +C A++V+      +V  +++C  C +
Sbjct: 155 CRDLIPKDVFDRWEKILCESLISSWDKFYCPFKDCSAMMVNNENGDANV-TQTECRSCHR 214

Query: 153 WFCFLCRTVWHEGQNCDL-----SRGREMISLNDMLFMGMTVGFYKKFSCCPKCRSFTEL 212
            FC  C+  WH G  CD      +  ++    +D L + M     K++  CP C+ + + 
Sbjct: 215 LFCVQCKVTWHAGIGCDEFQRFGNTKKKSSDEDDALLIQMAKN--KQWRRCPSCKFYVDK 274

Query: 213 NRKTGFCIVRCSFWHFCY 226
                    RC +  FCY
Sbjct: 275 VEGCQHIKCRCGY-QFCY 287

The following BLAST results are available for this feature:

BLAST of Sed0012595 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_015082762.1	1.6e-38	39.11	probable E3 ubiquitin-protein ligase RNF217 [Solanum pennellii]	[more]
PHT93504.1	2.1e-38	37.02	hypothetical protein T459_01386 [Capsicum annuum]	[more]
XP_006362044.1	2.8e-38	41.45	PREDICTED: probable E3 ubiquitin-protein ligase RNF217 [Solanum tuberosum]	[more]
PHU10691.1	3.7e-38	36.60	hypothetical protein BC332_22551 [Capsicum chinense]	[more]
XP_016539808.1	4.8e-38	36.60	PREDICTED: probable E3 ubiquitin-protein ligase RNF217 isoform X1 [Capsicum annu...	[more]

BLAST of Sed0012595 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q08B84	6.1e-12	25.24	E3 ubiquitin-protein ligase RNF19B OS=Xenopus laevis OX=8355 GN=rnf19b PE=2 SV=2	[more]
Q6ZMZ0	1.4e-08	23.08	E3 ubiquitin-protein ligase RNF19B OS=Homo sapiens OX=9606 GN=RNF19B PE=1 SV=2	[more]
A2A7Q9	1.4e-08	23.08	E3 ubiquitin-protein ligase RNF19B OS=Mus musculus OX=10090 GN=Rnf19b PE=1 SV=2	[more]

BLAST of Sed0012595 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2G3AH05	1.0e-38	37.02	Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_01386 PE=3 SV=1	[more]
A0A2G3BW23	1.8e-38	36.60	Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_22551 PE=3 SV=1	[more]
A0A2G2XNK6	2.3e-38	36.60	Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_01439 PE=3 SV=1	[more]
A0A1U8DXQ3	2.3e-38	36.60	probable E3 ubiquitin-protein ligase RNF217 isoform X1 OS=Capsicum annuum OX=407...	[more]
A0A6I9U6L5	3.0e-38	39.42	E3 ubiquitin-protein ligase RNF144B-like isoform X1 OS=Sesamum indicum OX=4182 G...	[more]

BLAST of Sed0012595 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G53690.1	1.4e-27	32.11	RING/U-box superfamily protein	[more]
AT3G14250.1	1.8e-22	27.27	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002867	IBR domain	SMART	SM00647	ibrneu5	coord: 103..168 e-value: 4.6E-4 score: 29.5
IPR002867	IBR domain	PFAM	PF01485	IBR	coord: 117..168 e-value: 1.5E-5 score: 25.1
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 28..114 e-value: 4.9E-13 score: 50.8
None	No IPR available	PANTHER	PTHR11685:SF146	RBR-TYPE E3 UBIQUITIN TRANSFERASE	coord: 25..225
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 31..109
IPR031127	E3 ubiquitin ligase RBR family	PANTHER	PTHR11685	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	coord: 25..225
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 53..62
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 33..80 score: 8.889546
IPR044066	TRIAD supradomain	PROSITE	PS51873	TRIAD	coord: 29..244 score: 12.856047

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0012595.1	Sed0012595.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
molecular_function	GO:0004842	ubiquitin-protein transferase activity