Sed0012407 (gene) Chayote v1

Overview


Name	Sed0012407
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein RDM1-like
Location	LG12: 5919821 .. 5922184 (+)
RNA-Seq Expression	Sed0012407
Synteny	Sed0012407

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAGCCTTTGGAAGCATTGCGAGAAGATCTGGTCTCTCAAAATTGGAGCTGGTTGGATTCATTACTGAGCTCTACGGCCTATTCCTCAACAAACCCACATCACAAAAACACTCAGCTTCAGTTTCAGCTTCAACTTTCCGATTCAAAGCTCTTTGCTTTACGGAGGTACCTTACCATCACTCTTGACTTTCCATTCATCATCCCATAACCACCTTTGTTCATATGTACATATTCTTCACTTGGTTTCTCCGAAAAATCAAACCCCATGTTCTTTCATTTTGGACTCTGTAATTATGGAGATTTTTAACACCATCTCTGATGGGCTGCTGCTTTCTGCATTTCTATGACTATTTCTTGTTTCAATGAGATGTTAATTGGAATTGTATCTCATCCGGTTGGTGGGTTTTGCGAAAATGTCTCTAAGTGGGATGAACATCCATTGTTTGCTGTAGTGTTGTGTGGTAATCAAATCTAATTAGTAATTAGTTCTTAGAAATTGCCCCAGATATTGATGGTTATCTTGTGTAGGTTTATAATATGAGCCTGTTCCTACCAGAAACTGAGTGCATTGCATCATAGTTTGTATGTTAGAGGTGGGTTTTGGGAATGGGGTGAAATTGTTTTTGTTTTTTGTTCCAAGTTTGTGATTTTGTTGTTTTTTAGTATCCCACCTTGGAAAACCGAGCAGATCTTTTAGGGTTTATCAGATAGATGAGCTACTCTAATCATTCCTAATTAGTTTTGAGGTTTTGGTCGAAATTGGGATCCGATTATTGATGGATCCGAAGAGGTACCATCTTGAAAGGCATGTTGAGAATCTGAAAATGTAAGGTGACCTCCTAGGACTCACAAGATAGATGGGCTACTCTAATAATTTCCAATTAGTTTTGCGATAAAAGCAAACATCTAGTACATTTTTTATGCTAACTAAAAGCTCTTGTGCTCTTTTTTATCTTCTCCATAGTAATCTTTTGTATCTAGTGGATCTATATATTTTGGTTGACATCTCATATTTCTAGCTCTTTCTACAATAACATGGATTTTTAAATGTGTTAGTATTTGATAAGCTGTTATGTCCTAATCGGCATGGTTACTATCTATGATCTTTTTTCTCCAGAATTTCAATCTTTACCAAATGAAAAGACCAATGCCGTGGAATGAACAAGTAGATGTTATGTCATCAGGGGAATCTTCTTCCTCTGACTCAGAAATAGGAGGACAAAATGGTGGATTGGAGTTCAAACCCTCCACTGACAATTTCATAATCCCTGCCCAAGATTTGACATCTGAGGGTAAGTTGGCTTTTGTCTTTGCTAAATCAACAATTTAGGCCCTGTTTGATAACAATTTTGTTTTTAAATTTTAAGCCTACAACAACTACCTTACCATAGGTCTTTTCTTATTTGGATATCTACATCTTACTTATATTTTAAGAAACAAAACCAAAATTTAGAAACAAAAAAAGTAGCTTCGAAAAGCTTGTTTTTGTTTTTGAAATTGGTTAGTATGTACCTACTTTCTTAAGGAAAGATGGAGCAGATGGTAGGAAATAATTTGAGTAGAAAAAGGCTTAAATTTCATAAACAAAAAATGAAATGATTATCAAACAGGCCTTAACTGGCTGTTAAATTCAGAGTTTCTCAATTGATGCTGGCTGCATATATGAATTGTCACATTCATAAGCTTTGAAAGAGAGGATCTTCTTTGAAATGTCGTCTAACGATGCAGGTATGTTGATGAAAAGGGCGGAAATGTATCAAGAATATATGAAACAGATCCCAATCCCAGCACACCGTGGTTCTGTAATACCATTTACATCATGGATGGGGCTAGGAAAATCTATAAAGCAGCTTTATTGCCAGCCTTTGCATTACCTGACTAACATTCTACTTAAACAGTGGGATCACTTAAGGTTCGGAAGCACGGATGAATACAAGCCATTGGATATCGTAATTCACCCGAGTAAAGCTGAAGCAACCATATGGCTGGTTGAAGAGATTCATAGGCTCACCACATCACATCATCATGTTGCTAAACTCTGGTTATCAGATCCAATGCACGAATTGTATGTTGACTCCATTTTCCCCCAACTATGATGGCTGCTCTCTGTGAAGTTCTGGTCTGTGTTGATATTATAACATATTTCTAGAAGGCTAACTGGTCATTGACAATGTGAATTGTAATAGAAACAACATAGTTCTTTTGTCACACTGCTCTTCAATATGTAGGTTTCTTATCAACTGACAGAGAACATGCTCTAGTAATTTCTTCTGTCCATTCTTGCTGTCTGTCTGTGAAGTTGTTTATTGCATTTTACCTTTGTAGCTTACAGATAGAAAAGCAGATTTAAGTGTTTTGGGAAG

mRNA sequence

GAAAGCCTTTGGAAGCATTGCGAGAAGATCTGGTCTCTCAAAATTGGAGCTGGTTGGATTCATTACTGAGCTCTACGGCCTATTCCTCAACAAACCCACATCACAAAAACACTCAGCTTCAGTTTCAGCTTCAACTTTCCGATTCAAAGCTCTTTGCTTTACGGAGAATTTCAATCTTTACCAAATGAAAAGACCAATGCCGTGGAATGAACAAGTAGATGTTATGTCATCAGGGGAATCTTCTTCCTCTGACTCAGAAATAGGAGGACAAAATGGTGGATTGGAGTTCAAACCCTCCACTGACAATTTCATAATCCCTGCCCAAGATTTGACATCTGAGGGTATGTTGATGAAAAGGGCGGAAATGTATCAAGAATATATGAAACAGATCCCAATCCCAGCACACCGTGGTTCTGTAATACCATTTACATCATGGATGGGGCTAGGAAAATCTATAAAGCAGCTTTATTGCCAGCCTTTGCATTACCTGACTAACATTCTACTTAAACAGTGGGATCACTTAAGGTTCGGAAGCACGGATGAATACAAGCCATTGGATATCGTAATTCACCCGAGTAAAGCTGAAGCAACCATATGGCTGGTTGAAGAGATTCATAGGCTCACCACATCACATCATCATGTTGCTAAACTCTGGTTATCAGATCCAATGCACGAATTGTATGTTGACTCCATTTTCCCCCAACTATGATGGCTGCTCTCTGTGAAGTTCTGGTCTGTGTTGATATTATAACATATTTCTAGAAGGCTAACTGGTCATTGACAATGTGAATTGTAATAGAAACAACATAGTTCTTTTGTCACACTGCTCTTCAATATGTAGGTTTCTTATCAACTGACAGAGAACATGCTCTAGTAATTTCTTCTGTCCATTCTTGCTGTCTGTCTGTGAAGTTGTTTATTGCATTTTACCTTTGTAGCTTACAGATAGAAAAGCAGATTTAAGTGTTTTGGGAAG

Coding sequence (CDS)

ATGAAAAGACCAATGCCGTGGAATGAACAAGTAGATGTTATGTCATCAGGGGAATCTTCTTCCTCTGACTCAGAAATAGGAGGACAAAATGGTGGATTGGAGTTCAAACCCTCCACTGACAATTTCATAATCCCTGCCCAAGATTTGACATCTGAGGGTATGTTGATGAAAAGGGCGGAAATGTATCAAGAATATATGAAACAGATCCCAATCCCAGCACACCGTGGTTCTGTAATACCATTTACATCATGGATGGGGCTAGGAAAATCTATAAAGCAGCTTTATTGCCAGCCTTTGCATTACCTGACTAACATTCTACTTAAACAGTGGGATCACTTAAGGTTCGGAAGCACGGATGAATACAAGCCATTGGATATCGTAATTCACCCGAGTAAAGCTGAAGCAACCATATGGCTGGTTGAAGAGATTCATAGGCTCACCACATCACATCATCATGTTGCTAAACTCTGGTTATCAGATCCAATGCACGAATTGTATGTTGACTCCATTTTCCCCCAACTATGA

Protein sequence

MKRPMPWNEQVDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYCQPLHYLTNILLKQWDHLRFGSTDEYKPLDIVIHPSKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQL

Homology

[Close]

BLAST of Sed0012407 vs. NCBI nr
Match: XP_023538686.1 (protein RDM1-like [Cucurbita pepo subsp. pepo] >XP_023538687.1 protein RDM1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 322.0 bits (824), Expect = 3.1e-84
Identity = 151/174 (86.78%), Postives = 163/174 (93.68%), Query Frame = 0


Query: 1   MKRPMPWNEQVDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAE 60
           MKRPMPWNEQVDV+SSGESSSSDSEIGGQN G EFKPS D+F IPA+++TS+GML+KRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSDGMLIKRAE 60

Query: 61  MYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYCQPLHYLTNILLKQWDHLRFGSTDE 120
           MYQEYMKQIPIPAHRGSVIPFT+WMGLGKSIKQLY QPLHYLTNI LKQWD LRFGS DE
Sbjct: 61  MYQEYMKQIPIPAHRGSVIPFTTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSVDE 120

Query: 121 YKPLDIVIHPSKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQL 175
           YKPLD +IHPSKAEAT+WLVEEIHR T+SHHHVAKLWLSD MHE+YVDSIFPQL
Sbjct: 121 YKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 174

[Close]

BLAST of Sed0012407 vs. NCBI nr
Match: XP_022951070.1 (protein RDM1-like [Cucurbita moschata])

HSP 1 Score: 320.9 bits (821), Expect = 7.0e-84
Identity = 151/174 (86.78%), Postives = 162/174 (93.10%), Query Frame = 0


Query: 1   MKRPMPWNEQVDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAE 60
           MKRPMPWNEQVDV+SSGESSSSDSEIGGQN G EFKPS D+F IPA+++TSEGML+KRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAE 60

Query: 61  MYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYCQPLHYLTNILLKQWDHLRFGSTDE 120
           MYQEYMKQIPIPAHRGSVIPF +WMGLGKSIKQLY QPLHYLTNI LKQWD LRFGS DE
Sbjct: 61  MYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSVDE 120

Query: 121 YKPLDIVIHPSKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQL 175
           YKPLD +IHPSKAEAT+WLVEEIHR T+SHHHVAKLWLSD MHE+YVDSIFPQL
Sbjct: 121 YKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 174

[Close]

BLAST of Sed0012407 vs. NCBI nr
Match: KAG7028891.1 (Protein RDM1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 320.9 bits (821), Expect = 7.0e-84
Identity = 151/174 (86.78%), Postives = 162/174 (93.10%), Query Frame = 0


Query: 1   MKRPMPWNEQVDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAE 60
           MKRPMPWNEQVDV+SSGESSSSDSEIGGQN G EFKPS D+F IPA+++TSEGML+KRAE
Sbjct: 13  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAE 72

Query: 61  MYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYCQPLHYLTNILLKQWDHLRFGSTDE 120
           MYQEYMKQIPIPAHRGSVIPF +WMGLGKSIKQLY QPLHYLTNI LKQWD LRFGS DE
Sbjct: 73  MYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSVDE 132

Query: 121 YKPLDIVIHPSKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQL 175
           YKPLD +IHPSKAEAT+WLVEEIHR T+SHHHVAKLWLSD MHE+YVDSIFPQL
Sbjct: 133 YKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 186

[Close]

BLAST of Sed0012407 vs. NCBI nr
Match: KAG6597432.1 (Protein RDM1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 319.7 bits (818), Expect = 1.6e-83
Identity = 151/174 (86.78%), Postives = 161/174 (92.53%), Query Frame = 0


Query: 1   MKRPMPWNEQVDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAE 60
           MKRPMPWNEQVDV+SSGESSSSDSEIGGQN G EFKPS D F IPA+++TSEGML+KRAE
Sbjct: 43  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDAFKIPAKEMTSEGMLIKRAE 102

Query: 61  MYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYCQPLHYLTNILLKQWDHLRFGSTDE 120
           MYQEYMKQIPIPAHRGSVIPF +WMGLGKSIKQLY QPLHYLTNI LKQWD LRFGS DE
Sbjct: 103 MYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSVDE 162

Query: 121 YKPLDIVIHPSKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQL 175
           YKPLD +IHPSKAEAT+WLVEEIHR T+SHHHVAKLWLSD MHE+YVDSIFPQL
Sbjct: 163 YKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 216

[Close]

BLAST of Sed0012407 vs. NCBI nr
Match: XP_022974457.1 (protein RDM1-like [Cucurbita maxima] >XP_022974458.1 protein RDM1-like [Cucurbita maxima] >XP_022974459.1 protein RDM1-like [Cucurbita maxima] >XP_022975130.1 protein RDM1-like [Cucurbita maxima] >XP_022975131.1 protein RDM1-like [Cucurbita maxima] >XP_022975132.1 protein RDM1-like [Cucurbita maxima])

HSP 1 Score: 318.5 bits (815), Expect = 3.5e-83
Identity = 150/174 (86.21%), Postives = 162/174 (93.10%), Query Frame = 0


Query: 1   MKRPMPWNEQVDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAE 60
           MKRPMPWNEQVDV+SSGESSSSDSEIGGQN G EFKPS D+F IPA+++TSE ML+KRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEDMLIKRAE 60

Query: 61  MYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYCQPLHYLTNILLKQWDHLRFGSTDE 120
           MYQEYMKQIPIPA+RGSVIPFT+WMGLGKSIKQLY QPLHYLTNI LKQWD LRFGS DE
Sbjct: 61  MYQEYMKQIPIPAYRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNIQLKQWDQLRFGSVDE 120

Query: 121 YKPLDIVIHPSKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQL 175
           YKPLD +IHPSKAEAT+WLVEEIHR T+SHHHVAKLWLSD MHE+YVDSIFPQL
Sbjct: 121 YKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 174

[Close]

BLAST of Sed0012407 vs. ExPASy Swiss-Prot
Match: Q9LUJ3 (Protein RDM1 OS=Arabidopsis thaliana OX=3702 GN=RDM1 PE=1 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.7e-48
Identity = 93/163 (57.06%), Postives = 122/163 (74.85%), Query Frame = 0


Query: 11  VDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAEMYQEYMKQIP 70
           +++  SG+S SSD +    +G   F P   +     +D+  EG L++RAEMYQ+YMKQ+P
Sbjct: 7   MELRPSGDSGSSDVDAEISDG---FSPLDTSH----RDVADEGSLLRRAEMYQDYMKQVP 66

Query: 71  IPAHRGSVIPFTSWMGLGKSIKQLYCQPLHYLTNILLKQWDHLRFGSTDEYKPLDIVIHP 130
           IP +RGS+IPFTSW+GL  S+KQLY QPLHYLTN+LL++WD  RFG+  E + LD +IHP
Sbjct: 67  IPTNRGSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHP 126

Query: 131 SKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQ 174
           +KAEATIWLVEEIHRLT SH H+A LW SDPM+  ++D IFP+
Sbjct: 127 TKAEATIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPIFPE 162

[Close]

BLAST of Sed0012407 vs. ExPASy TrEMBL
Match: A0A6J1GHM4 (protein RDM1-like OS=Cucurbita moschata OX=3662 GN=LOC111454021 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 3.4e-84
Identity = 151/174 (86.78%), Postives = 162/174 (93.10%), Query Frame = 0


Query: 1   MKRPMPWNEQVDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAE 60
           MKRPMPWNEQVDV+SSGESSSSDSEIGGQN G EFKPS D+F IPA+++TSEGML+KRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAE 60

Query: 61  MYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYCQPLHYLTNILLKQWDHLRFGSTDE 120
           MYQEYMKQIPIPAHRGSVIPF +WMGLGKSIKQLY QPLHYLTNI LKQWD LRFGS DE
Sbjct: 61  MYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRFGSVDE 120

Query: 121 YKPLDIVIHPSKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQL 175
           YKPLD +IHPSKAEAT+WLVEEIHR T+SHHHVAKLWLSD MHE+YVDSIFPQL
Sbjct: 121 YKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 174

[Close]

BLAST of Sed0012407 vs. ExPASy TrEMBL
Match: A0A6J1IGA1 (protein RDM1-like OS=Cucurbita maxima OX=3661 GN=LOC111473115 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 1.7e-83
Identity = 150/174 (86.21%), Postives = 162/174 (93.10%), Query Frame = 0


Query: 1   MKRPMPWNEQVDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAE 60
           MKRPMPWNEQVDV+SSGESSSSDSEIGGQN G EFKPS D+F IPA+++TSE ML+KRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEDMLIKRAE 60

Query: 61  MYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYCQPLHYLTNILLKQWDHLRFGSTDE 120
           MYQEYMKQIPIPA+RGSVIPFT+WMGLGKSIKQLY QPLHYLTNI LKQWD LRFGS DE
Sbjct: 61  MYQEYMKQIPIPAYRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNIQLKQWDQLRFGSVDE 120

Query: 121 YKPLDIVIHPSKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQL 175
           YKPLD +IHPSKAEAT+WLVEEIHR T+SHHHVAKLWLSD MHE+YVDSIFPQL
Sbjct: 121 YKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL 174

[Close]

BLAST of Sed0012407 vs. ExPASy TrEMBL
Match: A0A6J1INZ9 (protein RDM1-like OS=Cucurbita maxima OX=3661 GN=LOC111479225 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.1e-82
Identity = 150/174 (86.21%), Postives = 160/174 (91.95%), Query Frame = 0


Query: 1   MKRPMPWNEQVDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAE 60
           MKRPMPWNEQVDV+SSGESSSSDSE G QN G EFKPS D+F IPA+++T+EGML+KRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSLDDFKIPAKEMTAEGMLIKRAE 60

Query: 61  MYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYCQPLHYLTNILLKQWDHLRFGSTDE 120
           MYQEYMKQI IPA RGSVIPFT+WMGLGKSIKQLY QPLHYLTNILLKQWD LRFGS DE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120

Query: 121 YKPLDIVIHPSKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQL 175
           YKPLD VIHPSKAEAT+WLVEEIHR T+SHHHVAKLWLSDPMHE YVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]

BLAST of Sed0012407 vs. ExPASy TrEMBL
Match: A0A6J1GV10 (protein RDM1 OS=Cucurbita moschata OX=3662 GN=LOC111457683 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.1e-82
Identity = 150/174 (86.21%), Postives = 160/174 (91.95%), Query Frame = 0


Query: 1   MKRPMPWNEQVDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAE 60
           MKRPMPWNEQVDV+SSGESSSSDSE G QN G EFKPS D+F IPA+++T+EGML+KRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSMDDFKIPAKEMTAEGMLIKRAE 60

Query: 61  MYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYCQPLHYLTNILLKQWDHLRFGSTDE 120
           MYQEYMKQI IPA RGSVIPFT+WMGLGKSIKQLY QPLHYLTNILLKQWD LRFGS DE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120

Query: 121 YKPLDIVIHPSKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQL 175
           YKPLD VIHPSKAEAT+WLVEEIHR T+SHHHVAKLWLSDPMHE YVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]

BLAST of Sed0012407 vs. ExPASy TrEMBL
Match: A0A6J1E3H6 (protein RDM1-like OS=Momordica charantia OX=3673 GN=LOC111025708 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 3.2e-82
Identity = 147/174 (84.48%), Postives = 160/174 (91.95%), Query Frame = 0


Query: 1   MKRPMPWNEQVDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAE 60
           MKRPMPWNEQVD++SSGESSSSDSEIGGQN G EFKPS D+  IPA+++TSEG+L KRAE
Sbjct: 1   MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAE 60

Query: 61  MYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYCQPLHYLTNILLKQWDHLRFGSTDE 120
           MYQEYMKQIPIPAHRGSVIPFT+W+GLGKSIKQLY QPL YLTNI LKQWD LRFGS+DE
Sbjct: 61  MYQEYMKQIPIPAHRGSVIPFTTWVGLGKSIKQLYSQPLXYLTNIQLKQWDQLRFGSSDE 120

Query: 121 YKPLDIVIHPSKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQL 175
           YKPLD +IHPSKAEATIW+VEEIHR T+SHHHVAKLWLSDPMH  YVDSIFPQL
Sbjct: 121 YKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL 174

[Close]

BLAST of Sed0012407 vs. TAIR 10
Match: AT3G22680.1 (RNA-DIRECTED DNA METHYLATION 1 )

HSP 1 Score: 193.7 bits (491), Expect = 1.2e-49
Identity = 93/163 (57.06%), Postives = 122/163 (74.85%), Query Frame = 0


Query: 11  VDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAEMYQEYMKQIP 70
           +++  SG+S SSD +    +G   F P   +     +D+  EG L++RAEMYQ+YMKQ+P
Sbjct: 7   MELRPSGDSGSSDVDAEISDG---FSPLDTSH----RDVADEGSLLRRAEMYQDYMKQVP 66

Query: 71  IPAHRGSVIPFTSWMGLGKSIKQLYCQPLHYLTNILLKQWDHLRFGSTDEYKPLDIVIHP 130
           IP +RGS+IPFTSW+GL  S+KQLY QPLHYLTN+LL++WD  RFG+  E + LD +IHP
Sbjct: 67  IPTNRGSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHP 126

Query: 131 SKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQ 174
           +KAEATIWLVEEIHRLT SH H+A LW SDPM+  ++D IFP+
Sbjct: 127 TKAEATIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPIFPE 162

The following BLAST results are available for this feature:

BLAST of Sed0012407 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023538686.1	3.1e-84	86.78	protein RDM1-like [Cucurbita pepo subsp. pepo] >XP_023538687.1 protein RDM1-like...	[more]
XP_022951070.1	7.0e-84	86.78	protein RDM1-like [Cucurbita moschata]	[more]
KAG7028891.1	7.0e-84	86.78	Protein RDM1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6597432.1	1.6e-83	86.78	Protein RDM1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022974457.1	3.5e-83	86.21	protein RDM1-like [Cucurbita maxima] >XP_022974458.1 protein RDM1-like [Cucurbit...	[more]

BLAST of Sed0012407 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUJ3	1.7e-48	57.06	Protein RDM1 OS=Arabidopsis thaliana OX=3702 GN=RDM1 PE=1 SV=1	[more]

BLAST of Sed0012407 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GHM4	3.4e-84	86.78	protein RDM1-like OS=Cucurbita moschata OX=3662 GN=LOC111454021 PE=4 SV=1	[more]
A0A6J1IGA1	1.7e-83	86.21	protein RDM1-like OS=Cucurbita maxima OX=3661 GN=LOC111473115 PE=4 SV=1	[more]
A0A6J1INZ9	1.1e-82	86.21	protein RDM1-like OS=Cucurbita maxima OX=3661 GN=LOC111479225 PE=4 SV=1	[more]
A0A6J1GV10	1.1e-82	86.21	protein RDM1 OS=Cucurbita moschata OX=3662 GN=LOC111457683 PE=4 SV=1	[more]
A0A6J1E3H6	3.2e-82	84.48	protein RDM1-like OS=Momordica charantia OX=3673 GN=LOC111025708 PE=4 SV=1	[more]

BLAST of Sed0012407 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22680.1	1.2e-49	57.06	RNA-DIRECTED DNA METHYLATION 1	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036319	RDM1 superfamily	GENE3D	1.20.120.690	RDM1 protein domain	coord: 53..174 e-value: 1.5E-61 score: 207.6
IPR036319	RDM1 superfamily	SUPERFAMILY	109920	Hypothetical protein At3g22680	coord: 53..173
IPR015270	Protein RDM1, plant	PFAM	PF09187	RdDM_RDM1	coord: 55..173 e-value: 4.8E-66 score: 220.2
IPR015270	Protein RDM1, plant	PANTHER	PTHR36366	PROTEIN RDM1	coord: 1..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	PANTHER	PTHR36366:SF1	PROTEIN RDM1	coord: 1..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0012407.1	Sed0012407.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044030	regulation of DNA methylation
cellular_component	GO:0000419	RNA polymerase V complex
cellular_component	GO:0005634	nucleus