Sed0012281 (gene) Chayote v1

Overview
NameSed0012281
Typegene
OrganismSechium edule (Chayote v1)
DescriptionTy3/gypsy retrotransposon protein
LocationLG01: 10545385 .. 10546392 (+)
RNA-Seq ExpressionSed0012281
SyntenySed0012281
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAAAATAACCAAATGGAAACCAAGTTGAAGAAGGTTACAGAGGAAGTTCAGAAGACCCCAGCAATGGAGAAGAAGAACGAAGAAGAAGCGAAACCAAAGCGACGCCTACCCGAAGCCATAGCCAACCGGATGCTGGAGTTTCCTCTCTTCCATGGAACCGATGCGCCCACCTGGATCTTGAAAATAGAGCTCCACTTCAAATTTCACGCCATGGACGACTTTCCCACCATGATCGATGTCATCGCACTCTCTATGTCCGGCCAGGCCTTATACTGGTTCCGATGCCTCGAAAACCAGAATCAAATGCCGAAATCGTGGAATGAGTTTCGCCATGCTCTGTTCGAGCGATTTGAAGGCGGCGACACCATGTGTGAACGGTTCATTGCGTTGCAGCAACATGGGACCGTGAGGGAGTATTGCAGCCAGTTCGAGTTGTACGGGGCGCTCCTTCCAGACATTCCTGACTCCGTTCTTCGAGCCAAGTTTATGAACGGCTTACACGCACTCATTCGCGCCGAGGTCCGGGTGTTCCAGCCAAAGCACATACGAGACATGATGAAAACGGCGAGGTTGGTGGAAGATAAGAACCTCGCCTCGACGAGCCTACCCGTCGGAGATGCATTGCGTCATACCATGAAACTTGGAGCCACCATCGACGGGAAGCCCGTGGTTGTTAAGGTCGACAGTGGGGAAACTCATAATTTCATATCCCGAAATTTGGCTAAGGATTTGAAGCTCCCAGTGGACGACTACGGCATCAGCAGTGTGGTTTTGGGTTCCGGGAAGGCCATCAAAGTAGATGAAGTTTTTCGCGGCGTGCTGCTGCGAATCCAGAATCTAACGTTTGTGGAGGACTGTTTGCCGATTGAAATGGAAGGGGATTTTGAGGTCATATTGGGAATGCCGTGGCTGCGTGGCATGGAAGTTGATTGGAAAGCTCGAACCATGAACATGAATTTGGGGGAAAAGACTGTAACATTTCAGGGAGACCCATTTCTCTGA

mRNA sequence

ATGGAAAAAAATAACCAAATGGAAACCAAGTTGAAGAAGGTTACAGAGGAAGTTCAGAAGACCCCAGCAATGGAGAAGAAGAACGAAGAAGAAGCGAAACCAAAGCGACGCCTACCCGAAGCCATAGCCAACCGGATGCTGGAGTTTCCTCTCTTCCATGGAACCGATGCGCCCACCTGGATCTTGAAAATAGAGCTCCACTTCAAATTTCACGCCATGGACGACTTTCCCACCATGATCGATGTCATCGCACTCTCTATGTCCGGCCAGGCCTTATACTGGTTCCGATGCCTCGAAAACCAGAATCAAATGCCGAAATCGTGGAATGAGTTTCGCCATGCTCTGTTCGAGCGATTTGAAGGCGGCGACACCATGTGTGAACGGTTCATTGCGTTGCAGCAACATGGGACCGTGAGGGAGTATTGCAGCCAGTTCGAGTTGTACGGGGCGCTCCTTCCAGACATTCCTGACTCCGTTCTTCGAGCCAAGTTTATGAACGGCTTACACGCACTCATTCGCGCCGAGGTCCGGGTGTTCCAGCCAAAGCACATACGAGACATGATGAAAACGGCGAGGTTGGTGGAAGATAAGAACCTCGCCTCGACGAGCCTACCCGTCGGAGATGCATTGCGTCATACCATGAAACTTGGAGCCACCATCGACGGGAAGCCCGTGGTTGTTAAGGTCGACAGTGGGGAAACTCATAATTTCATATCCCGAAATTTGGCTAAGGATTTGAAGCTCCCAGTGGACGACTACGGCATCAGCAGTGTGGTTTTGGGTTCCGGGAAGGCCATCAAAGTAGATGAAGTTTTTCGCGGCGTGCTGCTGCGAATCCAGAATCTAACGTTTGTGGAGGACTGTTTGCCGATTGAAATGGAAGGGGATTTTGAGGTCATATTGGGAATGCCGTGGCTGCGTGGCATGGAAGTTGATTGGAAAGCTCGAACCATGAACATGAATTTGGGGGAAAAGACTGTAACATTTCAGGGAGACCCATTTCTCTGA

Coding sequence (CDS)

ATGGAAAAAAATAACCAAATGGAAACCAAGTTGAAGAAGGTTACAGAGGAAGTTCAGAAGACCCCAGCAATGGAGAAGAAGAACGAAGAAGAAGCGAAACCAAAGCGACGCCTACCCGAAGCCATAGCCAACCGGATGCTGGAGTTTCCTCTCTTCCATGGAACCGATGCGCCCACCTGGATCTTGAAAATAGAGCTCCACTTCAAATTTCACGCCATGGACGACTTTCCCACCATGATCGATGTCATCGCACTCTCTATGTCCGGCCAGGCCTTATACTGGTTCCGATGCCTCGAAAACCAGAATCAAATGCCGAAATCGTGGAATGAGTTTCGCCATGCTCTGTTCGAGCGATTTGAAGGCGGCGACACCATGTGTGAACGGTTCATTGCGTTGCAGCAACATGGGACCGTGAGGGAGTATTGCAGCCAGTTCGAGTTGTACGGGGCGCTCCTTCCAGACATTCCTGACTCCGTTCTTCGAGCCAAGTTTATGAACGGCTTACACGCACTCATTCGCGCCGAGGTCCGGGTGTTCCAGCCAAAGCACATACGAGACATGATGAAAACGGCGAGGTTGGTGGAAGATAAGAACCTCGCCTCGACGAGCCTACCCGTCGGAGATGCATTGCGTCATACCATGAAACTTGGAGCCACCATCGACGGGAAGCCCGTGGTTGTTAAGGTCGACAGTGGGGAAACTCATAATTTCATATCCCGAAATTTGGCTAAGGATTTGAAGCTCCCAGTGGACGACTACGGCATCAGCAGTGTGGTTTTGGGTTCCGGGAAGGCCATCAAAGTAGATGAAGTTTTTCGCGGCGTGCTGCTGCGAATCCAGAATCTAACGTTTGTGGAGGACTGTTTGCCGATTGAAATGGAAGGGGATTTTGAGGTCATATTGGGAATGCCGTGGCTGCGTGGCATGGAAGTTGATTGGAAAGCTCGAACCATGAACATGAATTTGGGGGAAAAGACTGTAACATTTCAGGGAGACCCATTTCTCTGA

Protein sequence

MEKNNQMETKLKKVTEEVQKTPAMEKKNEEEAKPKRRLPEAIANRMLEFPLFHGTDAPTWILKIELHFKFHAMDDFPTMIDVIALSMSGQALYWFRCLENQNQMPKSWNEFRHALFERFEGGDTMCERFIALQQHGTVREYCSQFELYGALLPDIPDSVLRAKFMNGLHALIRAEVRVFQPKHIRDMMKTARLVEDKNLASTSLPVGDALRHTMKLGATIDGKPVVVKVDSGETHNFISRNLAKDLKLPVDDYGISSVVLGSGKAIKVDEVFRGVLLRIQNLTFVEDCLPIEMEGDFEVILGMPWLRGMEVDWKARTMNMNLGEKTVTFQGDPFL
Homology
BLAST of Sed0012281 vs. NCBI nr
Match: KAA0056890.1 (aminoacyl-tRNA ligase [Cucumis melo var. makuwa] >TYJ99393.1 aminoacyl-tRNA ligase [Cucumis melo var. makuwa])

HSP 1 Score: 281.2 bits (718), Expect = 1.2e-71
Identity = 162/347 (46.69%), Postives = 209/347 (60.23%), Query Frame = 0

Query: 7   METKLKKV-TEEVQKTPAMEKKN--------------EEEAKPKRRLPEAIANRMLEFPL 66
           ++ KLKKV  EEV   P     N               ++  P+      + N  LE P+
Sbjct: 8   LDAKLKKVEDEEVHNIPTTHDNNLTTLMHQMALLLNGHQQCLPQYAPTHRMPN--LELPM 67

Query: 67  FHGTDAPTWILKIELHFKFHAMDDFPTMIDVIALSMSGQALYWFRCLENQNQMPKSWNEF 126
           F GTD   WILK+E +F+ H +DD   M+D I L MSGQAL WFRC +N  + P+SW+EF
Sbjct: 68  FDGTDTLMWILKMERYFEVHHIDDIARMMDTILLCMSGQALAWFRCFQNWGKPPESWDEF 127

Query: 127 RHALFERFEGGDTMCERFIALQQHGTVREYCSQFELYGALLPDIPDSVLRAKFMNGLHAL 186
           R +L+ RF     +C +F+ L+Q G+V EYCS+FE  GALLP++   VL AKFMNGL   
Sbjct: 128 RDSLYMRFGDARNVCSKFLGLEQEGSVEEYCSKFETLGALLPELQHVVLEAKFMNGLKTE 187

Query: 187 IRAEVRVFQPKHIRDMMKTARLVEDKNLASTSLPVGDALRHTMKLGATIDGKPVVVKVDS 246
           IR +VR+  PK I D+M  ARL E KN          AL  T + G T+  + V+VKV S
Sbjct: 188 IREDVRMLHPKDILDIMHRARLGEKKN--------NVALNSTKRKG-TVKERSVIVKVVS 247

Query: 247 GETHNFISRNLAKDLKLPVDDYGISSVVLGSGKAIKVDEVFRGVLLRIQNLTFVEDCLPI 306
              +N IS+NLA DLKL +D YG  SVVLGSGK +K D + RGVLL+I N T+VED  P+
Sbjct: 248 WTDYNLISKNLATDLKLKLDMYGDYSVVLGSGKKVKGDGICRGVLLQIGNDTYVEDFFPL 307

Query: 307 EMEGDFEVILGMPWLRG---MEVDWKARTMNMNLGEKTVTFQGDPFL 336
           +M  D EVILG  WL     MEVDWK   M + +G++TVT + DPFL
Sbjct: 308 QMGEDDEVILGNLWLVALGKMEVDWKNLPMKLKVGKETVTLRKDPFL 343

BLAST of Sed0012281 vs. NCBI nr
Match: KAE8652678.1 (hypothetical protein Csa_013756 [Cucumis sativus])

HSP 1 Score: 275.8 bits (704), Expect = 5.0e-70
Identity = 162/344 (47.09%), Postives = 207/344 (60.17%), Query Frame = 0

Query: 7   METKLKKV-TEEVQKTPAMEKKNEE---------EAKPKRRLPEAIANRM--LEFPLFHG 66
           +E KLKKV  EEV   P  +  +            A  +R L  A  +RM  LE P+F G
Sbjct: 8   LEAKLKKVEDEEVHNIPITDNNHTTLLHQMALLLNAHQQRLLQYAPTHRMPNLELPMFDG 67

Query: 67  TDAPTWILKIELHFKFHAMDDFPTMIDVIALSMSGQALYWFRCLENQNQMPKSWNEFRHA 126
           TD   WILK+E +F+ H +DD   M++ I L MSGQAL WFRC +N    P+SW EFR +
Sbjct: 68  TDTLMWILKMERYFEVHHIDDIAQMMETILLCMSGQALAWFRCFQNWGNPPESWGEFRGS 127

Query: 127 LFERFEGGDTMCERFIALQQHGTVREYCSQFELYGALLPDIPDSVLRAKFMNGLHALIRA 186
           L++RF  G  +  RFI LQQ G+V EYCS+FE  GALLP++   V+ AKFMNGL   IR 
Sbjct: 128 LYKRFGDGHRVLSRFIGLQQEGSVGEYCSKFESLGALLPELSHCVVEAKFMNGLKTEIRG 187

Query: 187 EVRVFQPKHIRDMMKTARLVEDKNLASTSLPVGDALRHTMKLGATIDGKPVVVKVDSGET 246
           EVR+   + I D+M  ARL E KN         +   ++ K   T+  + VVVKV S   
Sbjct: 188 EVRMLDTEGILDIMHRARLAEIKN---------NVAFNSTKRKGTVKERSVVVKVVSWTD 247

Query: 247 HNFISRNLAKDLKLPVDDYGISSVVLGSGKAIKVDEVFRGVLLRIQNLTFVEDCLPIEME 306
           +N IS+NLA DLKL +D YG  SVVLGSGK +K D + RGVLL+I N T+ ED  P++M 
Sbjct: 248 YNLISKNLATDLKLKLDMYGDYSVVLGSGKTVKGDGICRGVLLQIGNETYAEDFFPLQMG 307

Query: 307 GDFEVILGMPW---LRGMEVDWKARTMNMNLGEKTVTFQGDPFL 336
            D EVILG  W   L  MEVDWK  TM + +G++ VT + DP L
Sbjct: 308 EDDEVILGNLWLVDLGKMEVDWKNLTMKLEVGKEIVTLRKDPSL 342

BLAST of Sed0012281 vs. NCBI nr
Match: XP_016900762.1 (PREDICTED: uncharacterized protein LOC107991016 [Cucumis melo])

HSP 1 Score: 262.3 bits (669), Expect = 5.7e-66
Identity = 154/332 (46.39%), Postives = 197/332 (59.34%), Query Frame = 0

Query: 7   METKLKKV-TEEVQKTPAMEKKN--------------EEEAKPKRRLPEAIANRMLEFPL 66
           ++ KLKKV  EEV   P     N               ++  P+      + N  LE P+
Sbjct: 8   LDAKLKKVEDEEVHNIPTTHDNNLTTLMHQMALLLNGHQQCLPQYAPTHRMPN--LELPM 67

Query: 67  FHGTDAPTWILKIELHFKFHAMDDFPTMIDVIALSMSGQALYWFRCLENQNQMPKSWNEF 126
           F GTD   WILK+E +F+ H +DD   M+D I L MSGQAL WFRC +N  + P+SW+EF
Sbjct: 68  FDGTDTLMWILKMERYFEVHHIDDIARMMDTILLCMSGQALAWFRCFQNWGKPPESWDEF 127

Query: 127 RHALFERFEGGDTMCERFIALQQHGTVREYCSQFELYGALLPDIPDSVLRAKFMNGLHAL 186
           R +L+ RF     +C +F+ L+Q G+V EYCS+FE  GALLP++   VL AKFMNGL   
Sbjct: 128 RDSLYMRFGDARNVCSKFLGLEQEGSVEEYCSKFETLGALLPELQHVVLEAKFMNGLKTE 187

Query: 187 IRAEVRVFQPKHIRDMMKTARLVEDKNLASTSLPVGDALRHTMKLGATIDGKPVVVKVDS 246
           IR +VR+  PK I D+M  ARL E KN          AL  T + G T+  + V+VKV S
Sbjct: 188 IREDVRMLHPKDILDIMHRARLGEKKN--------NVALNSTKRKG-TVKERSVIVKVVS 247

Query: 247 GETHNFISRNLAKDLKLPVDDYGISSVVLGSGKAIKVDEVFRGVLLRIQNLTFVEDCLPI 306
              +N IS+NLA DLKL +D YG  SVVLGSGK +K D + RGVLL+I N T+VED  P+
Sbjct: 248 WTDYNLISKNLATDLKLKLDMYGDYSVVLGSGKKVKGDGICRGVLLQIGNDTYVEDFFPL 307

Query: 307 EMEGDFEVILGMPWLRG---MEVDWKARTMNM 321
           +M  D EVILG  WL     MEVDWK   M +
Sbjct: 308 QMGEDDEVILGNLWLVALGKMEVDWKNLPMKL 328

BLAST of Sed0012281 vs. NCBI nr
Match: TYK06549.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 177.6 bits (449), Expect = 1.8e-40
Identity = 114/375 (30.40%), Postives = 186/375 (49.60%), Query Frame = 0

Query: 12  KKVTEEVQKTPAMEKKNEEEAKPKRRLPEAIANR----MLEFPLFHGTDAPTWILKIELH 71
           +K     + T +    +++  + K    EA A+R     +E P+F G D  +W+ + E +
Sbjct: 88  EKEANSSKSTVSGRSNSDDRNEGKTETEEAAADRNKFKKVEMPVFAGEDPDSWLFRAERY 147

Query: 72  FKFHAMDDFPTMIDVIALSMSGQALYWFRCLENQNQMPKSWNEFRHALFERFEGG--DTM 131
           F+ H + D   M+ V  +S  G AL W+R  E + +   SW   +  L  RF     + +
Sbjct: 148 FQIHKLSDSEKML-VSTISFDGPALNWYRSQEEREKF-TSWANLKERLLVRFRSSRDEKV 207

Query: 132 CERFIALQQHGTVREYCSQFELYGALLPDIPDSVLRAKFMNGLHALIRAEVRVFQPKHIR 191
            ERF+ ++Q  TV +Y + F+   A L D+PD V++  FMNGL   IRAEVR+ +PK + 
Sbjct: 208 LERFLRVKQESTVDDYRNLFDKLVAPLSDVPDPVVKDTFMNGLFPWIRAEVRICRPKGLA 267

Query: 192 DMMKTARLVEDKNL----------------------------------ASTSLPV----- 251
           +MM+ A+LVE++ +                                   +T+ P+     
Sbjct: 268 EMMEFAQLVENREIERNEVNLNNFAGGKYSQQNTVNNRTPANTNSDSKTNTNFPMRTITL 327

Query: 252 ---GDALRHTMKLGATIDGKPVVVKVDSGETHNFISRNLAKDLKLPVDDYGISSVVLGSG 311
               +A   TMK+   I  + V++ +D G THNFIS  L + L+LPV + G   V+LGSG
Sbjct: 328 RSSNNAEICTMKVKGKIQEREVIILIDYGATHNFISEKLVESLQLPVKETGHYGVILGSG 387

Query: 312 KAIKVDEVFRGVLLRIQNLTFVEDCLPIEMEGDFEVILGMPWLRGM---EVDWKARTMNM 336
             ++   +   V +++ N    E+ LP+E+ G  +V+LGM WL  +    VDWK  T+  
Sbjct: 388 TVVQGKGICENVEIQLSNWKVKEEFLPLEL-GGVDVVLGMQWLHSLGITVVDWKNLTLTF 447

BLAST of Sed0012281 vs. NCBI nr
Match: KAA0037097.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 176.8 bits (447), Expect = 3.1e-40
Identity = 114/375 (30.40%), Postives = 185/375 (49.33%), Query Frame = 0

Query: 12  KKVTEEVQKTPAMEKKNEEEAKPKRRLPEAIANR----MLEFPLFHGTDAPTWILKIELH 71
           +K     + T +    +++  + K    EA A+R     +E P+F G D  +W+ + E +
Sbjct: 88  EKEANSSKSTVSGRSNSDDRNEGKTETEEAAADRNKFKKVEMPVFAGEDPDSWLFRAERY 147

Query: 72  FKFHAMDDFPTMIDVIALSMSGQALYWFRCLENQNQMPKSWNEFRHALFERFEGG--DTM 131
           F+ H + D   M+ V  +S  G AL W+R  E + +   SW   +  L  RF     + +
Sbjct: 148 FQIHKLSDSEKML-VSTISFDGPALNWYRSQEEREKF-TSWANLKERLLVRFRSSRDEKV 207

Query: 132 CERFIALQQHGTVREYCSQFELYGALLPDIPDSVLRAKFMNGLHALIRAEVRVFQPKHIR 191
            ERF+ ++Q  TV +Y + F+   A L D+PD V++  FMNGL   IRAEVR+ +PK + 
Sbjct: 208 LERFLRVKQESTVDDYRNLFDKLVAPLSDVPDPVVKDTFMNGLFPWIRAEVRICRPKGLA 267

Query: 192 DMMKTARLVEDKNL----------------------------------ASTSLPV----- 251
           +MM+ A+LVE++ +                                   +T+ P+     
Sbjct: 268 EMMEFAQLVENREIERNEVNLNNFAGGKYSQQNTVNNRTPANTNSDSKTNTNFPMRTITL 327

Query: 252 ---GDALRHTMKLGATIDGKPVVVKVDSGETHNFISRNLAKDLKLPVDDYGISSVVLGSG 311
               +A   TMK+   I  + V++ +D G THNFIS  L + L+LPV + G   V+LGSG
Sbjct: 328 RSSNNAEICTMKVKGKIQEREVIILIDYGATHNFISEKLVESLQLPVKETGHYGVILGSG 387

Query: 312 KAIKVDEVFRGVLLRIQNLTFVEDCLPIEMEGDFEVILGMPWLRGM---EVDWKARTMNM 336
             ++   +   V +++ N    E+ LP+E+ G  +V+LGM WL  +    VDWK  T+  
Sbjct: 388 TVVQGKGICENVEIQLSNWKVKEEFLPLEL-GGVDVVLGMQWLHSLGITVVDWKNLTLTF 447

BLAST of Sed0012281 vs. ExPASy TrEMBL
Match: A0A5D3BJD9 (Aminoacyl-tRNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G006110 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 5.7e-72
Identity = 162/347 (46.69%), Postives = 209/347 (60.23%), Query Frame = 0

Query: 7   METKLKKV-TEEVQKTPAMEKKN--------------EEEAKPKRRLPEAIANRMLEFPL 66
           ++ KLKKV  EEV   P     N               ++  P+      + N  LE P+
Sbjct: 8   LDAKLKKVEDEEVHNIPTTHDNNLTTLMHQMALLLNGHQQCLPQYAPTHRMPN--LELPM 67

Query: 67  FHGTDAPTWILKIELHFKFHAMDDFPTMIDVIALSMSGQALYWFRCLENQNQMPKSWNEF 126
           F GTD   WILK+E +F+ H +DD   M+D I L MSGQAL WFRC +N  + P+SW+EF
Sbjct: 68  FDGTDTLMWILKMERYFEVHHIDDIARMMDTILLCMSGQALAWFRCFQNWGKPPESWDEF 127

Query: 127 RHALFERFEGGDTMCERFIALQQHGTVREYCSQFELYGALLPDIPDSVLRAKFMNGLHAL 186
           R +L+ RF     +C +F+ L+Q G+V EYCS+FE  GALLP++   VL AKFMNGL   
Sbjct: 128 RDSLYMRFGDARNVCSKFLGLEQEGSVEEYCSKFETLGALLPELQHVVLEAKFMNGLKTE 187

Query: 187 IRAEVRVFQPKHIRDMMKTARLVEDKNLASTSLPVGDALRHTMKLGATIDGKPVVVKVDS 246
           IR +VR+  PK I D+M  ARL E KN          AL  T + G T+  + V+VKV S
Sbjct: 188 IREDVRMLHPKDILDIMHRARLGEKKN--------NVALNSTKRKG-TVKERSVIVKVVS 247

Query: 247 GETHNFISRNLAKDLKLPVDDYGISSVVLGSGKAIKVDEVFRGVLLRIQNLTFVEDCLPI 306
              +N IS+NLA DLKL +D YG  SVVLGSGK +K D + RGVLL+I N T+VED  P+
Sbjct: 248 WTDYNLISKNLATDLKLKLDMYGDYSVVLGSGKKVKGDGICRGVLLQIGNDTYVEDFFPL 307

Query: 307 EMEGDFEVILGMPWLRG---MEVDWKARTMNMNLGEKTVTFQGDPFL 336
           +M  D EVILG  WL     MEVDWK   M + +G++TVT + DPFL
Sbjct: 308 QMGEDDEVILGNLWLVALGKMEVDWKNLPMKLKVGKETVTLRKDPFL 343

BLAST of Sed0012281 vs. ExPASy TrEMBL
Match: A0A1S4DXQ7 (uncharacterized protein LOC107991016 OS=Cucumis melo OX=3656 GN=LOC107991016 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 2.8e-66
Identity = 154/332 (46.39%), Postives = 197/332 (59.34%), Query Frame = 0

Query: 7   METKLKKV-TEEVQKTPAMEKKN--------------EEEAKPKRRLPEAIANRMLEFPL 66
           ++ KLKKV  EEV   P     N               ++  P+      + N  LE P+
Sbjct: 8   LDAKLKKVEDEEVHNIPTTHDNNLTTLMHQMALLLNGHQQCLPQYAPTHRMPN--LELPM 67

Query: 67  FHGTDAPTWILKIELHFKFHAMDDFPTMIDVIALSMSGQALYWFRCLENQNQMPKSWNEF 126
           F GTD   WILK+E +F+ H +DD   M+D I L MSGQAL WFRC +N  + P+SW+EF
Sbjct: 68  FDGTDTLMWILKMERYFEVHHIDDIARMMDTILLCMSGQALAWFRCFQNWGKPPESWDEF 127

Query: 127 RHALFERFEGGDTMCERFIALQQHGTVREYCSQFELYGALLPDIPDSVLRAKFMNGLHAL 186
           R +L+ RF     +C +F+ L+Q G+V EYCS+FE  GALLP++   VL AKFMNGL   
Sbjct: 128 RDSLYMRFGDARNVCSKFLGLEQEGSVEEYCSKFETLGALLPELQHVVLEAKFMNGLKTE 187

Query: 187 IRAEVRVFQPKHIRDMMKTARLVEDKNLASTSLPVGDALRHTMKLGATIDGKPVVVKVDS 246
           IR +VR+  PK I D+M  ARL E KN          AL  T + G T+  + V+VKV S
Sbjct: 188 IREDVRMLHPKDILDIMHRARLGEKKN--------NVALNSTKRKG-TVKERSVIVKVVS 247

Query: 247 GETHNFISRNLAKDLKLPVDDYGISSVVLGSGKAIKVDEVFRGVLLRIQNLTFVEDCLPI 306
              +N IS+NLA DLKL +D YG  SVVLGSGK +K D + RGVLL+I N T+VED  P+
Sbjct: 248 WTDYNLISKNLATDLKLKLDMYGDYSVVLGSGKKVKGDGICRGVLLQIGNDTYVEDFFPL 307

Query: 307 EMEGDFEVILGMPWLRG---MEVDWKARTMNM 321
           +M  D EVILG  WL     MEVDWK   M +
Sbjct: 308 QMGEDDEVILGNLWLVALGKMEVDWKNLPMKL 328

BLAST of Sed0012281 vs. ExPASy TrEMBL
Match: A0A5D3C860 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G00050 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 8.9e-41
Identity = 114/375 (30.40%), Postives = 186/375 (49.60%), Query Frame = 0

Query: 12  KKVTEEVQKTPAMEKKNEEEAKPKRRLPEAIANR----MLEFPLFHGTDAPTWILKIELH 71
           +K     + T +    +++  + K    EA A+R     +E P+F G D  +W+ + E +
Sbjct: 88  EKEANSSKSTVSGRSNSDDRNEGKTETEEAAADRNKFKKVEMPVFAGEDPDSWLFRAERY 147

Query: 72  FKFHAMDDFPTMIDVIALSMSGQALYWFRCLENQNQMPKSWNEFRHALFERFEGG--DTM 131
           F+ H + D   M+ V  +S  G AL W+R  E + +   SW   +  L  RF     + +
Sbjct: 148 FQIHKLSDSEKML-VSTISFDGPALNWYRSQEEREKF-TSWANLKERLLVRFRSSRDEKV 207

Query: 132 CERFIALQQHGTVREYCSQFELYGALLPDIPDSVLRAKFMNGLHALIRAEVRVFQPKHIR 191
            ERF+ ++Q  TV +Y + F+   A L D+PD V++  FMNGL   IRAEVR+ +PK + 
Sbjct: 208 LERFLRVKQESTVDDYRNLFDKLVAPLSDVPDPVVKDTFMNGLFPWIRAEVRICRPKGLA 267

Query: 192 DMMKTARLVEDKNL----------------------------------ASTSLPV----- 251
           +MM+ A+LVE++ +                                   +T+ P+     
Sbjct: 268 EMMEFAQLVENREIERNEVNLNNFAGGKYSQQNTVNNRTPANTNSDSKTNTNFPMRTITL 327

Query: 252 ---GDALRHTMKLGATIDGKPVVVKVDSGETHNFISRNLAKDLKLPVDDYGISSVVLGSG 311
               +A   TMK+   I  + V++ +D G THNFIS  L + L+LPV + G   V+LGSG
Sbjct: 328 RSSNNAEICTMKVKGKIQEREVIILIDYGATHNFISEKLVESLQLPVKETGHYGVILGSG 387

Query: 312 KAIKVDEVFRGVLLRIQNLTFVEDCLPIEMEGDFEVILGMPWLRGM---EVDWKARTMNM 336
             ++   +   V +++ N    E+ LP+E+ G  +V+LGM WL  +    VDWK  T+  
Sbjct: 388 TVVQGKGICENVEIQLSNWKVKEEFLPLEL-GGVDVVLGMQWLHSLGITVVDWKNLTLTF 447

BLAST of Sed0012281 vs. ExPASy TrEMBL
Match: A0A5A7T6B1 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G002030 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.5e-40
Identity = 114/375 (30.40%), Postives = 185/375 (49.33%), Query Frame = 0

Query: 12  KKVTEEVQKTPAMEKKNEEEAKPKRRLPEAIANR----MLEFPLFHGTDAPTWILKIELH 71
           +K     + T +    +++  + K    EA A+R     +E P+F G D  +W+ + E +
Sbjct: 88  EKEANSSKSTVSGRSNSDDRNEGKTETEEAAADRNKFKKVEMPVFAGEDPDSWLFRAERY 147

Query: 72  FKFHAMDDFPTMIDVIALSMSGQALYWFRCLENQNQMPKSWNEFRHALFERFEGG--DTM 131
           F+ H + D   M+ V  +S  G AL W+R  E + +   SW   +  L  RF     + +
Sbjct: 148 FQIHKLSDSEKML-VSTISFDGPALNWYRSQEEREKF-TSWANLKERLLVRFRSSRDEKV 207

Query: 132 CERFIALQQHGTVREYCSQFELYGALLPDIPDSVLRAKFMNGLHALIRAEVRVFQPKHIR 191
            ERF+ ++Q  TV +Y + F+   A L D+PD V++  FMNGL   IRAEVR+ +PK + 
Sbjct: 208 LERFLRVKQESTVDDYRNLFDKLVAPLSDVPDPVVKDTFMNGLFPWIRAEVRICRPKGLA 267

Query: 192 DMMKTARLVEDKNL----------------------------------ASTSLPV----- 251
           +MM+ A+LVE++ +                                   +T+ P+     
Sbjct: 268 EMMEFAQLVENREIERNEVNLNNFAGGKYSQQNTVNNRTPANTNSDSKTNTNFPMRTITL 327

Query: 252 ---GDALRHTMKLGATIDGKPVVVKVDSGETHNFISRNLAKDLKLPVDDYGISSVVLGSG 311
               +A   TMK+   I  + V++ +D G THNFIS  L + L+LPV + G   V+LGSG
Sbjct: 328 RSSNNAEICTMKVKGKIQEREVIILIDYGATHNFISEKLVESLQLPVKETGHYGVILGSG 387

Query: 312 KAIKVDEVFRGVLLRIQNLTFVEDCLPIEMEGDFEVILGMPWLRGM---EVDWKARTMNM 336
             ++   +   V +++ N    E+ LP+E+ G  +V+LGM WL  +    VDWK  T+  
Sbjct: 388 TVVQGKGICENVEIQLSNWKVKEEFLPLEL-GGVDVVLGMQWLHSLGITVVDWKNLTLTF 447

BLAST of Sed0012281 vs. ExPASy TrEMBL
Match: A0A0A0LUB3 (Retrotrans_gag domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G064860 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.4e-38
Identity = 97/204 (47.55%), Postives = 123/204 (60.29%), Query Frame = 0

Query: 7   METKLKKV-TEEVQKTPAMEKKNEE---------EAKPKRRLPEAIANRM--LEFPLFHG 66
           +E KLKKV  EEV   P  +  +            A  +R L  A  +RM  LE P+F G
Sbjct: 8   LEAKLKKVEDEEVHNIPITDNNHTTLLHQMALLLNAHQQRLLQYAPTHRMPNLELPMFDG 67

Query: 67  TDAPTWILKIELHFKFHAMDDFPTMIDVIALSMSGQALYWFRCLENQNQMPKSWNEFRHA 126
           TD   WILK+E +F+ H +DD   M++ I L MSGQAL WFRC +N    P+SW EFR +
Sbjct: 68  TDTLMWILKMERYFEVHHIDDIAQMMETILLCMSGQALAWFRCFQNWGNPPESWGEFRGS 127

Query: 127 LFERFEGGDTMCERFIALQQHGTVREYCSQFELYGALLPDIPDSVLRAKFMNGLHALIRA 186
           L++RF  G  +  RFI LQQ G+V EYCS+FE  GALLP++   V+ AKFMNGL   IR 
Sbjct: 128 LYKRFGDGHRVLSRFIGLQQEGSVGEYCSKFESLGALLPELSHCVVEAKFMNGLKTEIRG 187

Query: 187 EVRVFQPKHIRDMMKTARLVEDKN 199
           EVR+   + I D+M  ARL E KN
Sbjct: 188 EVRMLDTEGILDIMHRARLAEIKN 211

BLAST of Sed0012281 vs. TAIR 10
Match: AT3G30770.1 (Eukaryotic aspartyl protease family protein )

HSP 1 Score: 57.0 bits (136), Expect = 3.4e-08
Identity = 36/101 (35.64%), Postives = 54/101 (53.47%), Query Frame = 0

Query: 214 MKLGATIDGKPVVVKVDSGETHNFISRNLAKDLKLPVDDYGISSVVLGSGKAIKVDEVFR 273
           M+    I    VVV +DSG T+NFIS  LA  LKLP      +SV+LG  + I+      
Sbjct: 284 MRFYGFISCHKVVVVIDSGATNNFISDELALVLKLPTSTTNQASVLLGQRQCIQTIGTCF 343

Query: 274 GVLLRIQNLTFVEDCLPIEM-EGDFEVILGMPWLRGMEVDW 314
           G+ L +Q +   E+ L +++ + D +VILG    + +E  W
Sbjct: 344 GINLLVQEVEINENFLLLDLTKTDVDVILGYGGSQNLERQW 384

BLAST of Sed0012281 vs. TAIR 10
Match: AT3G42723.1 (aminoacyl-tRNA ligases;ATP binding;nucleotide binding )

HSP 1 Score: 56.6 bits (135), Expect = 4.4e-08
Identity = 37/123 (30.08%), Postives = 58/123 (47.15%), Query Frame = 0

Query: 80  IDVIALSMSGQALYWFRCLENQNQMPKSWNEFRHALFERFEGGDTM----CERFIALQQH 139
           + ++  ++ G    W + L  +N  P SW EF+  +    E   TM       +  +QQ 
Sbjct: 293 LQIVYSNLEGDIGQWIKHLWKKNS-PTSWKEFKCMMAR--ETKTTMKVNHQPHYSGIQQE 352

Query: 140 GTVREYCSQFELYGALLPDIPDSVLRAKFMNGLHALIRAEVRVFQPKHIRDMMKTARLVE 199
           G+VREY  +FE        +P   L A F+ GL   ++  VR  +P  I  MM TA+ +E
Sbjct: 353 GSVREYRERFEALCLGSVILPGQGLEALFLQGLQPSLQTAVRELKPNGIVQMMDTAQWLE 412

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0056890.11.2e-7146.69aminoacyl-tRNA ligase [Cucumis melo var. makuwa] >TYJ99393.1 aminoacyl-tRNA liga... [more]
KAE8652678.15.0e-7047.09hypothetical protein Csa_013756 [Cucumis sativus][more]
XP_016900762.15.7e-6646.39PREDICTED: uncharacterized protein LOC107991016 [Cucumis melo][more]
TYK06549.11.8e-4030.40transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa][more]
KAA0037097.13.1e-4030.40Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BJD95.7e-7246.69Aminoacyl-tRNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24... [more]
A0A1S4DXQ72.8e-6646.39uncharacterized protein LOC107991016 OS=Cucumis melo OX=3656 GN=LOC107991016 PE=... [more]
A0A5D3C8608.9e-4130.40Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7T6B11.5e-4030.40Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A0A0LUB31.4e-3847.55Retrotrans_gag domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G064... [more]
Match NameE-valueIdentityDescription
AT3G30770.13.4e-0835.64Eukaryotic aspartyl protease family protein [more]
AT3G42723.14.4e-0830.08aminoacyl-tRNA ligases;ATP binding;nucleotide binding [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 82..169
e-value: 5.3E-12
score: 45.8
IPR021109Aspartic peptidase domain superfamilyGENE3D2.40.70.10Acid Proteasescoord: 202..331
e-value: 2.0E-18
score: 68.4
IPR021109Aspartic peptidase domain superfamilySUPERFAMILY50630Acid proteasescoord: 216..310
NoneNo IPR availablePFAMPF08284RVP_2coord: 220..313
e-value: 2.4E-13
score: 50.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35
NoneNo IPR availablePANTHERPTHR34482DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKEcoord: 208..331
NoneNo IPR availablePANTHERPTHR34482:SF20SUBFAMILY NOT NAMEDcoord: 208..331
NoneNo IPR availablePANTHERPTHR34482:SF20SUBFAMILY NOT NAMEDcoord: 44..201
NoneNo IPR availablePANTHERPTHR34482DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKEcoord: 44..201
NoneNo IPR availableCDDcd00303retropepsin_likecoord: 219..307
e-value: 8.43854E-18
score: 75.4508

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0012281.1Sed0012281.1mRNA