Sed0012192 (gene) Chayote v1

Overview


Name	Sed0012192
Type	gene
Organism	Sechium edule (Chayote v1)
Description	small acidic protein-like isoform X2
Location	LG07: 1194718 .. 1196634 (+)
RNA-Seq Expression	Sed0012192
Synteny	Sed0012192

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTCTTCTTCTTCTTCATATTCACATTCTTCATTCCATCCATTTCTTATTCTTCAAGATGAAATCCCCTCACATGGCGGCCATTACCGATTCTCTTGAGCAATCTTTCCGCACCTTCTCCATCAACCACCGCCTCGTCTCCGGTGCGGCGCCAGCTGCGACCTCCGCCGGTGTTCGGCGGTCGCCGTCGTCATCCTCCTCCTCCGACGAAGAACAACGTCGCCATCATCGCTTCGACACTACCTTGGAGCTCAACTCTCACATCTCCCTCCCTCCGTTCTGGGAACAATGCCTCGATTTGAAGGTTAGGTTATCGCTTCATTTTTCTTTCTTGTTTACTAATTCCTTCGCCGGTTGATGATTCGTTTCGTGAAATTGATTTGAAACACGGAGTTCTGTTATCCGACTTGATTTTGATTTTGATTTTGATTTTGTCTTTTTCGTTTTTTTGCCTCTTCTAACCTAGCTTCATTTAATGCGGAATAATGGCTCTTATATGATCAGATCCTTTGAAATTTATGTTCTCTTGTACTTTTTGATTCATCTTTCTGATGATTACTGTATGTAGAGAGCGCCTTTCGCTTTGATCTTTAATGCGTTTTTGTTTTCATGAATTTGTGTATACGAAACGATTAGTTCCGTTTTGCTTCAAATTATACTTCGTTTTCGTAGGATTCGGAATCGAAACCCTAGAAATAAATACTTGTTCAGTTCTCTATCCGTAAGAACGATTCAGAAACGCATATCTGTTGTTGTGTTTAGAATTGTTTGATTCTGGATTTTGGATTCCGTTGCATTGATCTTTGATTTTTCTTGAGAAAATTATCTTTCCTCAGGAGAACATGAAATTATTAACTCTTGCGCTTCAATTCCGTTTGTTTTCTACAGTTGTTCTCGATTCGTACGAAAGATTCAGAAACAAATATCTGTTGTTGTTGTGTCTAGAATCGTTTGATTGTGGATTTTGGATTCCTGTACATCGATCTTCGATTTTGTTGAGAAATCTTCCCTCATGAACATGAAATTAACTGTTGCGATGTAGACAGGGGAAGTGTATTACAGAAACTGCCGGACCGGAATGAGAGTAAAGGAAGATCCGAGGATAACAGAAGCACACAGCCGAGATTCATACTCCGACGGAGATGAGAGCTCGTCGGACGGCGGCAGCGAGGAGTCGTGCTGTTCGTCACCGTACGGCGGCGGTGGAAGGCAGCAATATCCGGCGGAAAGCGAGGAGGAAGTGCTGGTGGTGGCGGGATGCAAGAGATGCTTCATGTACTTCATGGTGCCGAAGCAGGTTGAGGATTGCCCGAAATGCAGCACCAGTCGTCTTGTTCATTTCGATCGCTCAGACGACAGTAATGGATTTCCATGATGATTCAGAACGCAGTATTTGGGTAAAAACCCTTTCTGACAAAATCTTTGATTCTTTGTTGCAAATGGCAAATGGGGTTTGAAATTATGAGTTTCTCTTTCTCTTTGATGGTATGATGTGTTGTGTGAGAGTGTTTGTTTTGTGTGTGTGTGTGTGTTTTTTTTTTCCAGTGTATGGATTGGAAAGTTTTTGGTTGTGATTGAAAAGAAAAAAAAAGGGGAAAAGGGAAAAAGGAGAAGAGAATCTCTGGCATGGGCTGCTGCCATGGATGTCTGAGAAAGGTACAATAAAATGTGCAGGCTGCTGCTCTGTATTGGTTGGTGGTCAACGAATCAAACGAAGAAGAAGGAATATTATTTTTGCTCGTGAAGACAGCGGTTTCTTGCCTTTTTATTCTAAATCAATATTCAATTCCTCTCTTTCTTTTTTTTCTATCAACAATGTAATTATTTAATCATTGAAAATCAGAGTTGCCCATCTAAATTATTTGGTTTCATACATGGTCCGGTTACAAAAATAAATAAATAAAATTAGAAAAATTT

mRNA sequence

TTTTCTTCTTCTTCTTCATATTCACATTCTTCATTCCATCCATTTCTTATTCTTCAAGATGAAATCCCCTCACATGGCGGCCATTACCGATTCTCTTGAGCAATCTTTCCGCACCTTCTCCATCAACCACCGCCTCGTCTCCGGTGCGGCGCCAGCTGCGACCTCCGCCGGTGTTCGGCGGTCGCCGTCGTCATCCTCCTCCTCCGACGAAGAACAACGTCGCCATCATCGCTTCGACACTACCTTGGAGCTCAACTCTCACATCTCCCTCCCTCCGTTCTGGGAACAATGCCTCGATTTGAAGACAGGGGAAGTGTATTACAGAAACTGCCGGACCGGAATGAGAGTAAAGGAAGATCCGAGGATAACAGAAGCACACAGCCGAGATTCATACTCCGACGGAGATGAGAGCTCGTCGGACGGCGGCAGCGAGGAGTCGTGCTGTTCGTCACCGTACGGCGGCGGTGGAAGGCAGCAATATCCGGCGGAAAGCGAGGAGGAAGTGCTGGTGGTGGCGGGATGCAAGAGATGCTTCATGTACTTCATGGTGCCGAAGCAGGTTGAGGATTGCCCGAAATGCAGCACCAGTCGTCTTGTTCATTTCGATCGCTCAGACGACAGTAATGGATTTCCATGATGATTCAGAACGCAGTATTTGGGTAAAAACCCTTTCTGACAAAATCTTTGATTCTTTGTTGCAAATGGCAAATGGGGTTTGAAATTATGAGTTTCTCTTTCTCTTTGATGGTATGATGTGTTGTGTGAGAGTGTTTGTTTTGTGTGTGTGTGTGTGTTTTTTTTTTCCAGTGTATGGATTGGAAAGTTTTTGGTTGTGATTGAAAAGAAAAAAAAAGGGGAAAAGGGAAAAAGGAGAAGAGAATCTCTGGCATGGGCTGCTGCCATGGATGTCTGAGAAAGGTACAATAAAATGTGCAGGCTGCTGCTCTGTATTGGTTGGTGGTCAACGAATCAAACGAAGAAGAAGGAATATTATTTTTGCTCGTGAAGACAGCGGTTTCTTGCCTTTTTATTCTAAATCAATATTCAATTCCTCTCTTTCTTTTTTTTCTATCAACAATGTAATTATTTAATCATTGAAAATCAGAGTTGCCCATCTAAATTATTTGGTTTCATACATGGTCCGGTTACAAAAATAAATAAATAAAATTAGAAAAATTT

Coding sequence (CDS)

ATGAAATCCCCTCACATGGCGGCCATTACCGATTCTCTTGAGCAATCTTTCCGCACCTTCTCCATCAACCACCGCCTCGTCTCCGGTGCGGCGCCAGCTGCGACCTCCGCCGGTGTTCGGCGGTCGCCGTCGTCATCCTCCTCCTCCGACGAAGAACAACGTCGCCATCATCGCTTCGACACTACCTTGGAGCTCAACTCTCACATCTCCCTCCCTCCGTTCTGGGAACAATGCCTCGATTTGAAGACAGGGGAAGTGTATTACAGAAACTGCCGGACCGGAATGAGAGTAAAGGAAGATCCGAGGATAACAGAAGCACACAGCCGAGATTCATACTCCGACGGAGATGAGAGCTCGTCGGACGGCGGCAGCGAGGAGTCGTGCTGTTCGTCACCGTACGGCGGCGGTGGAAGGCAGCAATATCCGGCGGAAAGCGAGGAGGAAGTGCTGGTGGTGGCGGGATGCAAGAGATGCTTCATGTACTTCATGGTGCCGAAGCAGGTTGAGGATTGCCCGAAATGCAGCACCAGTCGTCTTGTTCATTTCGATCGCTCAGACGACAGTAATGGATTTCCATGA

Protein sequence

MKSPHMAAITDSLEQSFRTFSINHRLVSGAAPAATSAGVRRSPSSSSSSDEEQRRHHRFDTTLELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMRVKEDPRITEAHSRDSYSDGDESSSDGGSEESCCSSPYGGGGRQQYPAESEEEVLVVAGCKRCFMYFMVPKQVEDCPKCSTSRLVHFDRSDDSNGFP

Homology

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BLAST of Sed0012192 vs. NCBI nr
Match: KAG6576106.1 (hypothetical protein SDJN03_26745, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014626.1 hypothetical protein SDJN02_24805 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 305.1 bits (780), Expect = 4.4e-79
Identity = 161/201 (80.10%), Postives = 168/201 (83.58%), Query Frame = 0


Query: 1   MKSPHMAAITDSLEQSFRTFSINHRLVSGAAPAATSAGVRRSPSSSSSSDEEQ---RRHH 60
           MKSP MAA+TDSLEQSFRTFS+NHRLVS    AA SAGVRRS SSSSS+DE      +HH
Sbjct: 1   MKSPDMAAVTDSLEQSFRTFSLNHRLVS----AAPSAGVRRSSSSSSSADERHLPLNQHH 60

Query: 61  RFDTTLELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMRVKEDPRITEAHSRDSYS---- 120
           RFDTTLELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMRV EDPR  EAHSRD YS    
Sbjct: 61  RFDTTLELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMRVTEDPRTAEAHSRDLYSEDDD 120

Query: 121 --DGDESSSDGGSEESCCSSPYGGGGRQQYPAESEEEVLVVAGCKRCFMYFMVPKQVEDC 180
             D DESSSD GSEESC SS Y G  RQQYP   EE+VLVVAGCKRCFMYFMVPKQVEDC
Sbjct: 121 DNDADESSSDDGSEESCSSSSY-GASRQQYPPGKEEDVLVVAGCKRCFMYFMVPKQVEDC 180

Query: 181 PKCSTSRLVHFDRSDDSNGFP 193
           PKCS+SRLVHFDRS+DSNGFP
Sbjct: 181 PKCSSSRLVHFDRSEDSNGFP 196

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BLAST of Sed0012192 vs. NCBI nr
Match: XP_038906838.1 (uncharacterized protein LOC120092736 [Benincasa hispida])

HSP 1 Score: 304.3 bits (778), Expect = 7.5e-79
Identity = 162/207 (78.26%), Postives = 175/207 (84.54%), Query Frame = 0


Query: 1   MKSPHMAAITDSLEQSFRTFSINHRLVSGAAPAATSAGVRRSP----SSSSSSDEEQ--- 60
           MKSP MAA+TDSLEQSFR FS+NHRL   A+ AA+SAGVRRSP    SSSSSSD+E    
Sbjct: 1   MKSPDMAAVTDSLEQSFRNFSLNHRL---ASAAASSAGVRRSPSSFSSSSSSSDDEPHLP 60

Query: 61  -RRHHRFDTTLELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMRVKEDPRITEAHSRDSY 120
             +H++FDT LELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMRVKEDPR  EAHSRD Y
Sbjct: 61  LHQHNQFDTILELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMRVKEDPRTAEAHSRDLY 120

Query: 121 S-------DGDESSSDGGSEESCCSSPYGGGGRQQYPAESEEEVLVVAGCKRCFMYFMVP 180
           S       DGDESSSDGGSEESC SS Y GG R+QYPAE+ E+VLVVAGCKRCFMYFMVP
Sbjct: 121 SEDEDDDEDGDESSSDGGSEESCSSSSY-GGSRRQYPAENVEDVLVVAGCKRCFMYFMVP 180

Query: 181 KQVEDCPKCSTSRLVHFDRSDDSNGFP 193
           KQVEDCPKCS+SRLVHFDRSD+SNGFP
Sbjct: 181 KQVEDCPKCSSSRLVHFDRSDESNGFP 203

[Close]

BLAST of Sed0012192 vs. NCBI nr
Match: XP_022953156.1 (uncharacterized protein LOC111455780 [Cucurbita moschata])

HSP 1 Score: 303.9 bits (777), Expect = 9.8e-79
Identity = 160/201 (79.60%), Postives = 168/201 (83.58%), Query Frame = 0


Query: 1   MKSPHMAAITDSLEQSFRTFSINHRLVSGAAPAATSAGVRRSPSSSSSSDEEQ---RRHH 60
           MKSP MAA+TDSLEQSFRTFS+NHRL+S    AA SAGVRRS SSSSS+DE      +HH
Sbjct: 1   MKSPDMAAVTDSLEQSFRTFSLNHRLLS----AAPSAGVRRSSSSSSSADERHLPLNQHH 60

Query: 61  RFDTTLELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMRVKEDPRITEAHSRDSYS---- 120
           RFDTTLELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMRV EDPR  EAHSRD YS    
Sbjct: 61  RFDTTLELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMRVTEDPRTAEAHSRDLYSEDDD 120

Query: 121 --DGDESSSDGGSEESCCSSPYGGGGRQQYPAESEEEVLVVAGCKRCFMYFMVPKQVEDC 180
             D DESSSD GSEESC SS Y G  RQQYP   EE+VLVVAGCKRCFMYFMVPKQVEDC
Sbjct: 121 ENDADESSSDDGSEESCSSSSY-GASRQQYPPGKEEDVLVVAGCKRCFMYFMVPKQVEDC 180

Query: 181 PKCSTSRLVHFDRSDDSNGFP 193
           PKCS+SRLVHFDRS+DSNGFP
Sbjct: 181 PKCSSSRLVHFDRSEDSNGFP 196

[Close]

BLAST of Sed0012192 vs. NCBI nr
Match: KAA0039848.1 (uncharacterized protein E6C27_scaffold122G001230 [Cucumis melo var. makuwa] >TYK24651.1 uncharacterized protein E5676_scaffold266G002010 [Cucumis melo var. makuwa])

HSP 1 Score: 302.8 bits (774), Expect = 2.2e-78
Identity = 163/205 (79.51%), Postives = 174/205 (84.88%), Query Frame = 0


Query: 1   MKSPHMAAITDSLEQSFRTFSINHRLVSGAAPAATSAGVRRSP----SSSSSSDEEQ--- 60
           MKSP MAA+TDSLEQSFR FS+NHRL S AAP  +SAGVRRSP    SSSSSSD+E    
Sbjct: 1   MKSPDMAAVTDSLEQSFRNFSLNHRL-SSAAP--SSAGVRRSPSSFSSSSSSSDDEPHLP 60

Query: 61  -RRHHRFDTTLELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMRVKEDPRITEAHSRDSY 120
             +H+RFDT LELNSHISLPPFWEQCLDLKTGEVYYRNCRTGM+VKEDPR   AHSRD Y
Sbjct: 61  LHQHNRFDTILELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMKVKEDPRTAVAHSRDLY 120

Query: 121 S-----DGDESSSDGGSEESCCSSPYGGGGRQQYPAESEEEVLVVAGCKRCFMYFMVPKQ 180
           S     DGDESSSDGGSEESC SS Y GG RQQYPAE+ E+VLVVAGCKRCFMYFMVPKQ
Sbjct: 121 SEDDGEDGDESSSDGGSEESCSSSSY-GGSRQQYPAENVEDVLVVAGCKRCFMYFMVPKQ 180

Query: 181 VEDCPKCSTSRLVHFDRSDDSNGFP 193
           VEDCPKCS+SRLVHFDRSD+SNGFP
Sbjct: 181 VEDCPKCSSSRLVHFDRSDESNGFP 201

[Close]

BLAST of Sed0012192 vs. NCBI nr
Match: XP_004140554.1 (uncharacterized protein LOC101221916 [Cucumis sativus] >KGN46421.1 hypothetical protein Csa_005342 [Cucumis sativus])

HSP 1 Score: 300.8 bits (769), Expect = 8.3e-78
Identity = 162/206 (78.64%), Postives = 173/206 (83.98%), Query Frame = 0


Query: 1   MKSPHMAAITDSLEQSFRTFSINHRLVSGAAPAATSAGVRRSP----SSSSSSDEEQ--- 60
           MKSP MAA+TDSLEQSFR FS+NHRL S AAP  +SAGVRRSP    SSSSSSD+E    
Sbjct: 1   MKSPDMAAVTDSLEQSFRNFSLNHRL-SSAAP--SSAGVRRSPSSFSSSSSSSDDEPHLP 60

Query: 61  -RRHHRFDTTLELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMRVKEDPRITEAHSRDSY 120
             +H+RFDT LELNSHISLPPFWEQCLDLKTGEVYYRNCRTGM+VKEDPR   AHSRD Y
Sbjct: 61  LHQHNRFDTILELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMKVKEDPRTAVAHSRDLY 120

Query: 121 ------SDGDESSSDGGSEESCCSSPYGGGGRQQYPAESEEEVLVVAGCKRCFMYFMVPK 180
                  DGDESSSDGGSEESC SS Y GG RQQYPAE+ E+VLVVAGCKRCFMYFMVPK
Sbjct: 121 LEDDDGEDGDESSSDGGSEESCSSSSY-GGSRQQYPAENVEDVLVVAGCKRCFMYFMVPK 180

Query: 181 QVEDCPKCSTSRLVHFDRSDDSNGFP 193
           QVEDCPKCS+SRLVHFDRSD+SNGFP
Sbjct: 181 QVEDCPKCSSSRLVHFDRSDESNGFP 202

[Close]

BLAST of Sed0012192 vs. ExPASy TrEMBL
Match: A0A6J1GM82 (uncharacterized protein LOC111455780 OS=Cucurbita moschata OX=3662 GN=LOC111455780 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 4.7e-79
Identity = 160/201 (79.60%), Postives = 168/201 (83.58%), Query Frame = 0


Query: 1   MKSPHMAAITDSLEQSFRTFSINHRLVSGAAPAATSAGVRRSPSSSSSSDEEQ---RRHH 60
           MKSP MAA+TDSLEQSFRTFS+NHRL+S    AA SAGVRRS SSSSS+DE      +HH
Sbjct: 1   MKSPDMAAVTDSLEQSFRTFSLNHRLLS----AAPSAGVRRSSSSSSSADERHLPLNQHH 60

Query: 61  RFDTTLELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMRVKEDPRITEAHSRDSYS---- 120
           RFDTTLELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMRV EDPR  EAHSRD YS    
Sbjct: 61  RFDTTLELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMRVTEDPRTAEAHSRDLYSEDDD 120

Query: 121 --DGDESSSDGGSEESCCSSPYGGGGRQQYPAESEEEVLVVAGCKRCFMYFMVPKQVEDC 180
             D DESSSD GSEESC SS Y G  RQQYP   EE+VLVVAGCKRCFMYFMVPKQVEDC
Sbjct: 121 ENDADESSSDDGSEESCSSSSY-GASRQQYPPGKEEDVLVVAGCKRCFMYFMVPKQVEDC 180

Query: 181 PKCSTSRLVHFDRSDDSNGFP 193
           PKCS+SRLVHFDRS+DSNGFP
Sbjct: 181 PKCSSSRLVHFDRSEDSNGFP 196

[Close]

BLAST of Sed0012192 vs. ExPASy TrEMBL
Match: A0A5A7TA84 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002010 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 1.1e-78
Identity = 163/205 (79.51%), Postives = 174/205 (84.88%), Query Frame = 0


Query: 1   MKSPHMAAITDSLEQSFRTFSINHRLVSGAAPAATSAGVRRSP----SSSSSSDEEQ--- 60
           MKSP MAA+TDSLEQSFR FS+NHRL S AAP  +SAGVRRSP    SSSSSSD+E    
Sbjct: 1   MKSPDMAAVTDSLEQSFRNFSLNHRL-SSAAP--SSAGVRRSPSSFSSSSSSSDDEPHLP 60

Query: 61  -RRHHRFDTTLELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMRVKEDPRITEAHSRDSY 120
             +H+RFDT LELNSHISLPPFWEQCLDLKTGEVYYRNCRTGM+VKEDPR   AHSRD Y
Sbjct: 61  LHQHNRFDTILELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMKVKEDPRTAVAHSRDLY 120

Query: 121 S-----DGDESSSDGGSEESCCSSPYGGGGRQQYPAESEEEVLVVAGCKRCFMYFMVPKQ 180
           S     DGDESSSDGGSEESC SS Y GG RQQYPAE+ E+VLVVAGCKRCFMYFMVPKQ
Sbjct: 121 SEDDGEDGDESSSDGGSEESCSSSSY-GGSRQQYPAENVEDVLVVAGCKRCFMYFMVPKQ 180

Query: 181 VEDCPKCSTSRLVHFDRSDDSNGFP 193
           VEDCPKCS+SRLVHFDRSD+SNGFP
Sbjct: 181 VEDCPKCSSSRLVHFDRSDESNGFP 201

[Close]

BLAST of Sed0012192 vs. ExPASy TrEMBL
Match: A0A0A0KF89 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G091940 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 4.0e-78
Identity = 162/206 (78.64%), Postives = 173/206 (83.98%), Query Frame = 0


Query: 1   MKSPHMAAITDSLEQSFRTFSINHRLVSGAAPAATSAGVRRSP----SSSSSSDEEQ--- 60
           MKSP MAA+TDSLEQSFR FS+NHRL S AAP  +SAGVRRSP    SSSSSSD+E    
Sbjct: 1   MKSPDMAAVTDSLEQSFRNFSLNHRL-SSAAP--SSAGVRRSPSSFSSSSSSSDDEPHLP 60

Query: 61  -RRHHRFDTTLELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMRVKEDPRITEAHSRDSY 120
             +H+RFDT LELNSHISLPPFWEQCLDLKTGEVYYRNCRTGM+VKEDPR   AHSRD Y
Sbjct: 61  LHQHNRFDTILELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMKVKEDPRTAVAHSRDLY 120

Query: 121 ------SDGDESSSDGGSEESCCSSPYGGGGRQQYPAESEEEVLVVAGCKRCFMYFMVPK 180
                  DGDESSSDGGSEESC SS Y GG RQQYPAE+ E+VLVVAGCKRCFMYFMVPK
Sbjct: 121 LEDDDGEDGDESSSDGGSEESCSSSSY-GGSRQQYPAENVEDVLVVAGCKRCFMYFMVPK 180

Query: 181 QVEDCPKCSTSRLVHFDRSDDSNGFP 193
           QVEDCPKCS+SRLVHFDRSD+SNGFP
Sbjct: 181 QVEDCPKCSSSRLVHFDRSDESNGFP 202

[Close]

BLAST of Sed0012192 vs. ExPASy TrEMBL
Match: A0A6J1JMX9 (uncharacterized protein LOC111488350 OS=Cucurbita maxima OX=3661 GN=LOC111488350 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 2.0e-77
Identity = 158/202 (78.22%), Postives = 164/202 (81.19%), Query Frame = 0


Query: 1   MKSPHMAAITDSLEQSFRTFSINHRLVSGAAPAATSAGVRRSPSSSSSSDEE----QRRH 60
           MKSP MAA+TDSLEQSFRTFS+NHRLVS     A SAGVRRS SSSSS+DE        H
Sbjct: 1   MKSPDMAAVTDSLEQSFRTFSLNHRLVS----PAPSAGVRRSSSSSSSADERHLPLHHHH 60

Query: 61  HRFDTTLELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMRVKEDPRITEAHSRDSYS--- 120
           HRFDTTLELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMRV EDPR  EAH RD YS   
Sbjct: 61  HRFDTTLELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMRVTEDPRTAEAHGRDLYSEDD 120

Query: 121 ---DGDESSSDGGSEESCCSSPYGGGGRQQYPAESEEEVLVVAGCKRCFMYFMVPKQVED 180
              D DESSSD  SEESC SS Y G  RQQYP   EE+VLVVAGCKRCFMYFMVPKQVED
Sbjct: 121 DDNDADESSSDDSSEESCSSSSY-GASRQQYPPGKEEDVLVVAGCKRCFMYFMVPKQVED 180

Query: 181 CPKCSTSRLVHFDRSDDSNGFP 193
           CPKCS+SRLVHFDRS+DSNGFP
Sbjct: 181 CPKCSSSRLVHFDRSEDSNGFP 197

[Close]

BLAST of Sed0012192 vs. ExPASy TrEMBL
Match: A0A1S4E3A8 (uncharacterized protein LOC103498882 OS=Cucumis melo OX=3656 GN=LOC103498882 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.9e-75
Identity = 158/201 (78.61%), Postives = 170/201 (84.58%), Query Frame = 0


Query: 1   MKSPHMAAITDSLEQSFRTFSINHRLVSGAAPAATSAGVRRSP----SSSSSSDEEQ--- 60
           MKSP MAA+TDSLEQSFR FS+NHRL S AAP  +SAGVRRSP    SSSSSSD+E    
Sbjct: 1   MKSPDMAAVTDSLEQSFRNFSLNHRL-SSAAP--SSAGVRRSPSSFSSSSSSSDDEPHLP 60

Query: 61  -RRHHRFDTTLELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMRVKEDPRITEAHSRDSY 120
             +H+RFDT LELNSHISLPPFWEQCLDLKTGEVYYRNCRTGM+VKEDPR   AHSRD Y
Sbjct: 61  LHQHNRFDTILELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMKVKEDPRTAVAHSRDLY 120

Query: 121 S-----DGDESSSDGGSEESCCSSPYGGGGRQQYPAESEEEVLVVAGCKRCFMYFMVPKQ 180
           S     DGDESSSDGGSEESC SS Y GG RQQYPAE+ E+VLVVAGCKRCFMYFMVPKQ
Sbjct: 121 SEDDGEDGDESSSDGGSEESCSSSSY-GGSRQQYPAENVEDVLVVAGCKRCFMYFMVPKQ 180

Query: 181 VEDCPKCSTSRLVHFDRSDDS 189
           VEDCPKCS+SRLVHFDRSD++
Sbjct: 181 VEDCPKCSSSRLVHFDRSDET 197

[Close]

BLAST of Sed0012192 vs. TAIR 10
Match: AT2G33510.1 (CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28070.1); Has 3898 Blast hits to 1138 proteins in 179 species: Archae - 0; Bacteria - 40; Metazoa - 2353; Fungi - 242; Plants - 298; Viruses - 92; Other Eukaryotes - 873 (source: NCBI BLink). )

HSP 1 Score: 149.4 bits (376), Expect = 2.9e-36
Identity = 99/198 (50.00%), Postives = 118/198 (59.60%), Query Frame = 0


Query: 1   MKSPHMAAITDSLEQSFRTFSIN--HRLVSGAAPAATSAGVRRSPSSSSSSDEEQRRHHR 60
           MK+P+M  IT+SLE+S    S+N   R V G     +S+    +P S             
Sbjct: 1   MKAPNMETITESLEKSMMNCSLNDRRRRVVGDGFGRSSSNEHMTPIS------------- 60

Query: 61  FDTTLELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMRVKEDPR---ITEAHSRDSYSD- 120
            D TLELNSH+SLP  WEQCLDLKTGE+YY N + GMRVKEDPR     +  S DSY   
Sbjct: 61  -DRTLELNSHLSLPCHWEQCLDLKTGEIYYINWKNGMRVKEDPRKVMNADPDSGDSYGTV 120

Query: 121 -GDESSSDGGSEESCC-SSPYGGGGRQQYPAESEEE------VLVVAGCKRCFMYFMVPK 180
             +E SS   SEES   SSP      ++   E EEE      VLVVAGCK CFMYFMVPK
Sbjct: 121 CSEEDSSYYDSEESSSESSPSSRENHKEEEEEEEEEEEEEEDVLVVAGCKACFMYFMVPK 180

Query: 181 QVEDCPKCSTSRLVHFDR 185
            VEDCPKC+ ++L+HFDR
Sbjct: 181 LVEDCPKCA-AQLLHFDR 183

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BLAST of Sed0012192 vs. TAIR 10
Match: AT2G33510.2 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28070.1). )

HSP 1 Score: 139.4 bits (350), Expect = 3.0e-33
Identity = 99/213 (46.48%), Postives = 118/213 (55.40%), Query Frame = 0


Query: 1   MKSPHMAAITDSLEQSFRTFSIN--HRLVSGAAPAATSAGVRRSPSSSSSSDEEQRRHHR 60
           MK+P+M  IT+SLE+S    S+N   R V G     +S+    +P S             
Sbjct: 1   MKAPNMETITESLEKSMMNCSLNDRRRRVVGDGFGRSSSNEHMTPIS------------- 60

Query: 61  FDTTLELNSHISLPPFWEQCLDLK---------------TGEVYYRNCRTGMRVKEDPR- 120
            D TLELNSH+SLP  WEQCLDLK               TGE+YY N + GMRVKEDPR 
Sbjct: 61  -DRTLELNSHLSLPCHWEQCLDLKVKLITTETSNSCRFRTGEIYYINWKNGMRVKEDPRK 120

Query: 121 --ITEAHSRDSYSD--GDESSSDGGSEESCC-SSPYGGGGRQQYPAESEEE------VLV 180
               +  S DSY     +E SS   SEES   SSP      ++   E EEE      VLV
Sbjct: 121 VMNADPDSGDSYGTVCSEEDSSYYDSEESSSESSPSSRENHKEEEEEEEEEEEEEEDVLV 180

Query: 181 VAGCKRCFMYFMVPKQVEDCPKCSTSRLVHFDR 185
           VAGCK CFMYFMVPK VEDCPKC+ ++L+HFDR
Sbjct: 181 VAGCKACFMYFMVPKLVEDCPKCA-AQLLHFDR 198

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BLAST of Sed0012192 vs. TAIR 10
Match: AT1G28070.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33510.1); Has 85 Blast hits to 77 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 122.5 bits (306), Expect = 3.8e-28
Identity = 86/191 (45.03%), Postives = 109/191 (57.07%), Query Frame = 0


Query: 6   MAAITDSLEQSFRTFSINHRLVSGAAPAATSAGVRRSPSSSSSSDEEQRRHHRFDTTLEL 65
           MA IT+ LE+S +  S+  R         +S G          SDE      RF   LEL
Sbjct: 1   MADITEYLERSMQNCSLIDR--------RSSMG-----DGFGMSDEHIPISDRF---LEL 60

Query: 66  NSHISLPPFWEQCLDLKTGEVYYRNCRTGMRVKEDPRITEAHSRDSYSDGDESSSDG--- 125
           +SH S+P   EQCLDLKTGE+YYR+  +GMRVKEDPR  ++ SR +Y+D     S G   
Sbjct: 61  SSHFSVPSHLEQCLDLKTGEIYYRSWNSGMRVKEDPR--KSMSRGNYADQSSGESSGTVF 120

Query: 126 ---------GSEESCCSSPYGGGGRQQYPAESEEEVLVVAGCKRCFMYFMVPKQVEDCPK 185
                     SEES  SS      R+ +  E +E+VLVVAGCK C MYFMVPK  +DCPK
Sbjct: 121 SSEEVSSYYESEES--SSESSPSSRKYHKEEQDEDVLVVAGCKACLMYFMVPKLFKDCPK 170

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BLAST of Sed0012192 vs. TAIR 10
Match: AT5G06270.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 6.4e-04
Identity = 17/50 (34.00%), Postives = 27/50 (54.00%), Query Frame = 0


Query: 140 QYPAESEEEVLVVAGCKRCFMYFMVPKQVEDCPKCSTSRLVHFDRSDDSN 190
           +Y    E   +V+ GC RC MY M+ +    CPKC ++ L+ F   + +N
Sbjct: 56  RYSTSPETTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHENATN 105

The following BLAST results are available for this feature:

BLAST of Sed0012192 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6576106.1	4.4e-79	80.10	hypothetical protein SDJN03_26745, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038906838.1	7.5e-79	78.26	uncharacterized protein LOC120092736 [Benincasa hispida]	[more]
XP_022953156.1	9.8e-79	79.60	uncharacterized protein LOC111455780 [Cucurbita moschata]	[more]
KAA0039848.1	2.2e-78	79.51	uncharacterized protein E6C27_scaffold122G001230 [Cucumis melo var. makuwa] >TYK...	[more]
XP_004140554.1	8.3e-78	78.64	uncharacterized protein LOC101221916 [Cucumis sativus] >KGN46421.1 hypothetical ...	[more]

BLAST of Sed0012192 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0012192 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GM82	4.7e-79	79.60	uncharacterized protein LOC111455780 OS=Cucurbita moschata OX=3662 GN=LOC1114557...	[more]
A0A5A7TA84	1.1e-78	79.51	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KF89	4.0e-78	78.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G091940 PE=4 SV=1	[more]
A0A6J1JMX9	2.0e-77	78.22	uncharacterized protein LOC111488350 OS=Cucurbita maxima OX=3661 GN=LOC111488350...	[more]
A0A1S4E3A8	1.9e-75	78.61	uncharacterized protein LOC103498882 OS=Cucumis melo OX=3656 GN=LOC103498882 PE=...	[more]

BLAST of Sed0012192 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33510.1	2.9e-36	50.00	CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis t...	[more]
AT2G33510.2	3.0e-33	46.48	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_c...	[more]
AT1G28070.1	3.8e-28	45.03	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G06270.1	6.4e-04	34.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..57
None	No IPR available	PANTHER	PTHR14791	BOMB/KIRA PROTEINS	coord: 46..186
None	No IPR available	PANTHER	PTHR14791:SF43	BNAA04G19570D PROTEIN	coord: 46..186
IPR036020	WW domain superfamily	SUPERFAMILY	51045	WW domain	coord: 67..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0012192.1	Sed0012192.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding