
Sed0012061 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSexonpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGACAAAAGTTGCATTTTGCATCATTGTTGGGCTTGTTTCACTGGCTGCCTCCAACACCATGGCTGTGGACATTGACTATGTCCCATTCAACCTACAAGTACATATTGCCAATGGAGAACCAAAACATATGCGGTGTTTGGATTTCAACCCTCCATTGTACAAGGGCTCGAACCACGACTACGACGTTCCAGCCGAACTCTTCCCGTGCTCAAATAATAGAGTGAACCAATTCTGGATTTTGTCCCCAGAGGGCTATATTCGATCTTCTGGAAACTTGTGCTTGATCTATGACCCCTACGTCAACAATCCAAAAACCCCTGCAACGGTAAGGGCTTGCGATAAATCGAGCGTAGAAGCGAAGAAATGGAAGATTTGGCCTGAACATGGCACCATCACCCACGTTGCGATGCCCCGCCATGTCCTCACAGCGCCTTTTGCCGGGCCATATTCGTTTGTGGATGTTGAGCAAAACACATACGCTTCATCACAGACTTGGGAATTCTTATATAGCAACTAA ATGACAAAAGTTGCATTTTGCATCATTGTTGGGCTTGTTTCACTGGCTGCCTCCAACACCATGGCTGTGGACATTGACTATGTCCCATTCAACCTACAAGTACATATTGCCAATGGAGAACCAAAACATATGCGGTGTTTGGATTTCAACCCTCCATTGTACAAGGGCTCGAACCACGACTACGACGTTCCAGCCGAACTCTTCCCGTGCTCAAATAATAGAGTGAACCAATTCTGGATTTTGTCCCCAGAGGGCTATATTCGATCTTCTGGAAACTTGTGCTTGATCTATGACCCCTACGTCAACAATCCAAAAACCCCTGCAACGGTAAGGGCTTGCGATAAATCGAGCGTAGAAGCGAAGAAATGGAAGATTTGGCCTGAACATGGCACCATCACCCACGTTGCGATGCCCCGCCATGTCCTCACAGCGCCTTTTGCCGGGCCATATTCGTTTGTGGATGTTGAGCAAAACACATACGCTTCATCACAGACTTGGGAATTCTTATATAGCAACTAA ATGACAAAAGTTGCATTTTGCATCATTGTTGGGCTTGTTTCACTGGCTGCCTCCAACACCATGGCTGTGGACATTGACTATGTCCCATTCAACCTACAAGTACATATTGCCAATGGAGAACCAAAACATATGCGGTGTTTGGATTTCAACCCTCCATTGTACAAGGGCTCGAACCACGACTACGACGTTCCAGCCGAACTCTTCCCGTGCTCAAATAATAGAGTGAACCAATTCTGGATTTTGTCCCCAGAGGGCTATATTCGATCTTCTGGAAACTTGTGCTTGATCTATGACCCCTACGTCAACAATCCAAAAACCCCTGCAACGGTAAGGGCTTGCGATAAATCGAGCGTAGAAGCGAAGAAATGGAAGATTTGGCCTGAACATGGCACCATCACCCACGTTGCGATGCCCCGCCATGTCCTCACAGCGCCTTTTGCCGGGCCATATTCGTTTGTGGATGTTGAGCAAAACACATACGCTTCATCACAGACTTGGGAATTCTTATATAGCAACTAA MTKVAFCIIVGLVSLAASNTMAVDIDYVPFNLQVHIANGEPKHMRCLDFNPPLYKGSNHDYDVPAELFPCSNNRVNQFWILSPEGYIRSSGNLCLIYDPYVNNPKTPATVRACDKSSVEAKKWKIWPEHGTITHVAMPRHVLTAPFAGPYSFVDVEQNTYASSQTWEFLYSN Homology
BLAST of Sed0012061 vs. NCBI nr
Match: XP_002529062.1 (ricin-like [Ricinus communis] >EEF33306.1 ricin-agglutinin family protein [Ricinus communis]) HSP 1 Score: 67.0 bits (162), Expect = 1.8e-07 Identity = 45/122 (36.89%), Postives = 64/122 (52.46%), Query Frame = 0
BLAST of Sed0012061 vs. NCBI nr
Match: Q70US9.1 (RecName: Full=Volkensin; AltName: Allergen=Ade v RIP; Contains: RecName: Full=Volkensin A chain; Short=VKA; AltName: Full=Ribosome-inactivating protein volkensin; Short=RIP VK; AltName: Full=rRNA N-glycosidase; Contains: RecName: Full=Volkensin B chain; Short=VKB [Adenia volkensii] >CAD61022.1 Volkensin, partial [Adenia volkensii]) HSP 1 Score: 61.2 bits (147), Expect = 9.9e-06 Identity = 41/123 (33.33%), Postives = 61/123 (49.59%), Query Frame = 0
BLAST of Sed0012061 vs. ExPASy Swiss-Prot
Match: Q70US9 (Volkensin (Fragment) OS=Adenia volkensii OX=219186 GN=volk38 PE=1 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 1.3e-08 Identity = 41/123 (33.33%), Postives = 61/123 (49.59%), Query Frame = 0
BLAST of Sed0012061 vs. ExPASy TrEMBL
Match: B9SSU3 (rRNA N-glycosidase OS=Ricinus communis OX=3988 GN=RCOM_0792550 PE=3 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 8.7e-08 Identity = 45/122 (36.89%), Postives = 64/122 (52.46%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
|