Sed0012032 (gene) Chayote v1

Overview


Name	Sed0012032
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Nuclear transcription factor Y subunit B
Location	LG07: 2593575 .. 2594163 (+)
RNA-Seq Expression	Sed0012032
Synteny	Sed0012032

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGATCACTCTCCAATAGACATCATCAATATATATAAGTGGGAGAGACAAGTTTGGGGCACTTGAAAGGAGCAACGTGTCTACGTTTTAGAGGATAGAAAAAGCTTCTTTTTTTTTTCCTCCTTTCCCTTTCTCTTTTTTAGATGGATGAAAACACAGGCAAACCAGAGAGATTAGTAGAATTTAAGTATGATTTCTGCACCGGAGGCGGCGGAGGAGTCGGTGGCAGCACCGGTGGCTCGAGCGAGGAAGCGCGTAGCAGTGGAGTCGGGGTCGTAAAAGAGCAGGATCGGTTTCTTCCCATAGCAAACGTGGGGAGGATCATGAAGCAAATTCTTCCTCCAAACGCTAAAATCTCCAAGGAAGCCAAGGAAACTATGCAAGAATGTGTGTCGGAGTTCATCAGCTTCGTCACGGGCGAGGCGTCGGAGAAGTGCCGCGAGGAGAAGAGGAAGACTGTTAATGGTGATGACATTTGCTGTGCCTTGGCTACACTTGGATTTGATGATTATGCTGAGCCTTTGAAGAGGTATTTAGTTAGGTATAGAGAAATGGAAGGGGAGAGAGCTCACCAAGATAAGGGATGTTGAG

mRNA sequence

GGATCACTCTCCAATAGACATCATCAATATATATAAGTGGGAGAGACAAGTTTGGGGCACTTGAAAGGAGCAACGTGTCTACGTTTTAGAGGATAGAAAAAGCTTCTTTTTTTTTTCCTCCTTTCCCTTTCTCTTTTTTAGATGGATGAAAACACAGGCAAACCAGAGAGATTAGTAGAATTTAAGTATGATTTCTGCACCGGAGGCGGCGGAGGAGTCGGTGGCAGCACCGGTGGCTCGAGCGAGGAAGCGCGTAGCAGTGGAGTCGGGGTCGTAAAAGAGCAGGATCGGTTTCTTCCCATAGCAAACGTGGGGAGGATCATGAAGCAAATTCTTCCTCCAAACGCTAAAATCTCCAAGGAAGCCAAGGAAACTATGCAAGAATGTGTGTCGGAGTTCATCAGCTTCGTCACGGGCGAGGCGTCGGAGAAGTGCCGCGAGGAGAAGAGGAAGACTGTTAATGGTGATGACATTTGCTGTGCCTTGGCTACACTTGGATTTGATGATTATGCTGAGCCTTTGAAGAGGTATTTAGTTAGGTATAGAGAAATGGAAGGGGAGAGAGCTCACCAAGATAAGGGATGTTGAG

Coding sequence (CDS)

ATGGATGAAAACACAGGCAAACCAGAGAGATTAGTAGAATTTAAGTATGATTTCTGCACCGGAGGCGGCGGAGGAGTCGGTGGCAGCACCGGTGGCTCGAGCGAGGAAGCGCGTAGCAGTGGAGTCGGGGTCGTAAAAGAGCAGGATCGGTTTCTTCCCATAGCAAACGTGGGGAGGATCATGAAGCAAATTCTTCCTCCAAACGCTAAAATCTCCAAGGAAGCCAAGGAAACTATGCAAGAATGTGTGTCGGAGTTCATCAGCTTCGTCACGGGCGAGGCGTCGGAGAAGTGCCGCGAGGAGAAGAGGAAGACTGTTAATGGTGATGACATTTGCTGTGCCTTGGCTACACTTGGATTTGATGATTATGCTGAGCCTTTGAAGAGGTATTTAGTTAGGTATAGAGAAATGGAAGGGGAGAGAGCTCACCAAGATAAGGGATGTTGA

Protein sequence

MDENTGKPERLVEFKYDFCTGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLGFDDYAEPLKRYLVRYREMEGERAHQDKGC

Homology

[Close]

BLAST of Sed0012032 vs. NCBI nr
Match: XP_038876756.1 (nuclear transcription factor Y subunit B-1-like [Benincasa hispida])

HSP 1 Score: 266.2 bits (679), Expect = 1.7e-67
Identity = 132/148 (89.19%), Postives = 137/148 (92.57%), Query Frame = 0


Query: 1   MDENTGKPERLVEFKYDFCTGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRI 60
           MDENTG PERLVEFKYDF  GGG GVGGSTGGSSEEA +   GVVKEQDR LPIANVGRI
Sbjct: 1   MDENTGMPERLVEFKYDFTGGGGSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEAS+KC +EKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLKRYLVRYREMEGERAHQDKGC 149
           DDYAEPL+RYLVRYREMEGERA Q+KGC
Sbjct: 121 DDYAEPLRRYLVRYREMEGERAQQNKGC 148

[Close]

BLAST of Sed0012032 vs. NCBI nr
Match: XP_023549145.1 (nuclear transcription factor Y subunit B-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 263.8 bits (673), Expect = 8.6e-67
Identity = 130/148 (87.84%), Postives = 137/148 (92.57%), Query Frame = 0


Query: 1   MDENTGKPERLVEFKYDFCTGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRI 60
           MD+NT  PERLVEFKYDF TGGGGGVGGSTGGSSEEA S   G VKEQDR LPIANVGRI
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEAS+KC +EKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLKRYLVRYREMEGERAHQDKGC 149
           DDYAEPL+RYL+RYRE+EGERA Q+KGC
Sbjct: 121 DDYAEPLRRYLIRYREIEGERAQQNKGC 148

[Close]

BLAST of Sed0012032 vs. NCBI nr
Match: XP_022991512.1 (nuclear transcription factor Y subunit B-1 [Cucurbita maxima])

HSP 1 Score: 263.8 bits (673), Expect = 8.6e-67
Identity = 130/148 (87.84%), Postives = 137/148 (92.57%), Query Frame = 0


Query: 1   MDENTGKPERLVEFKYDFCTGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRI 60
           MD+NT  PERLVEFKYDF TGGGGGVGGSTGGSSEEA S   G VKEQDR LPIANVGRI
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEAS+KC +EKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLKRYLVRYREMEGERAHQDKGC 149
           DDYAEPL+RYL+RYRE+EGERA Q+KGC
Sbjct: 121 DDYAEPLRRYLIRYREIEGERAQQNKGC 148

[Close]

BLAST of Sed0012032 vs. NCBI nr
Match: XP_008451614.1 (PREDICTED: nuclear transcription factor Y subunit B-1 [Cucumis melo])

HSP 1 Score: 260.4 bits (664), Expect = 9.5e-66
Identity = 129/148 (87.16%), Postives = 135/148 (91.22%), Query Frame = 0


Query: 1   MDENTGKPERLVEFKYDFCTGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRI 60
           MDENTG PER VEFKYDF  GG  GVGGSTGGSSEEA +   GVVKEQDR LPIANVGRI
Sbjct: 1   MDENTGMPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEAS+KC +EKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLKRYLVRYREMEGERAHQDKGC 149
           DDYAEPL+RYLVRYR+MEGERA Q+KGC
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGC 148

[Close]

BLAST of Sed0012032 vs. NCBI nr
Match: XP_011659350.1 (nuclear transcription factor Y subunit B-5 [Cucumis sativus])

HSP 1 Score: 260.0 bits (663), Expect = 1.2e-65
Identity = 128/148 (86.49%), Postives = 135/148 (91.22%), Query Frame = 0


Query: 1   MDENTGKPERLVEFKYDFCTGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRI 60
           MDENTG PER +EFKYDF  GG  GVGGSTGGSSEEA +   GVVKEQDR LPIANVGRI
Sbjct: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEAS+KC +EKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLKRYLVRYREMEGERAHQDKGC 149
           DDYAEPL+RYLVRYR+MEGERA Q+KGC
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGC 148

[Close]

BLAST of Sed0012032 vs. ExPASy Swiss-Prot
Match: O82248 (Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana OX=3702 GN=NFYB5 PE=1 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.1e-40
Identity = 83/105 (79.05%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 44  VVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKR 103
           +VKEQDR LPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEAS+KC +EKR
Sbjct: 48  MVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKR 107

Query: 104 KTVNGDDICCALATLGFDDYAEPLKRYLVRYREMEGERA-HQDKG 148
           KTVNGDDIC A+A LGFDDYA  LK+YL RYR +EGE+  H  KG
Sbjct: 108 KTVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEKPNHHGKG 152

[Close]

BLAST of Sed0012032 vs. ExPASy Swiss-Prot
Match: Q67XJ2 (Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana OX=3702 GN=NFYB10 PE=1 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.3e-38
Identity = 84/128 (65.62%), Postives = 99/128 (77.34%), Query Frame = 0


Query: 20  TGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETM 79
           TGGGGG G    G  +  RS     V+EQDRFLPIAN+ RIMK+ LP N KI+K+AKETM
Sbjct: 6   TGGGGG-GSHESGGDQSPRSLN---VREQDRFLPIANISRIMKRGLPLNGKIAKDAKETM 65

Query: 80  QECVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLGFDDYAEPLKRYLVRYREMEG 139
           QECVSEFISFVT EAS+KC+ EKRKT+NGDD+  A+ATLGF+DY +PLK YL+RYREMEG
Sbjct: 66  QECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREMEG 125

Query: 140 ERAHQDKG 148
           +     KG
Sbjct: 126 DTKGSGKG 129

[Close]

BLAST of Sed0012032 vs. ExPASy Swiss-Prot
Match: Q9FGJ3 (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.3e-38
Identity = 80/115 (69.57%), Postives = 96/115 (83.48%), Query Frame = 0


Query: 27  GGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEF 86
           GG   G+++  +SS     +EQDRFLPIANV RIMK+ LP NAKISK+AKETMQECVSEF
Sbjct: 9   GGGQNGNNQNGQSS--LSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEF 68

Query: 87  ISFVTGEASEKCREEKRKTVNGDDICCALATLGFDDYAEPLKRYLVRYREMEGER 142
           ISFVTGEAS+KC++EKRKT+NGDD+  A+ TLGF+DY EPLK YL R+RE+EGER
Sbjct: 69  ISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGER 121

[Close]

BLAST of Sed0012032 vs. ExPASy Swiss-Prot
Match: Q0J7P4 (Nuclear transcription factor Y subunit B-11 OS=Oryza sativa subsp. japonica OX=39947 GN=HD5 PE=1 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 6.7e-38
Identity = 82/121 (67.77%), Postives = 92/121 (76.03%), Query Frame = 0


Query: 22  GGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQE 81
           GGGG G S G         G    KEQDRFLPIANV RIMK+ LP NAKISKE+KET+QE
Sbjct: 33  GGGGCGSSAGYVVYGGGGGGDSPAKEQDRFLPIANVSRIMKRSLPANAKISKESKETVQE 92

Query: 82  CVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLGFDDYAEPLKRYLVRYREMEGER 141
           CVSEFISFVTGEAS+KC+ EKRKT+NGDD+  A+ TLGF+ Y  PLK YL RYRE EGE+
Sbjct: 93  CVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEAYVGPLKSYLNRYREAEGEK 152

Query: 142 A 143
           A
Sbjct: 153 A 153

[Close]

BLAST of Sed0012032 vs. ExPASy Swiss-Prot
Match: Q60EQ4 (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 158.3 bits (399), Expect = 6.7e-38
Identity = 79/120 (65.83%), Postives = 95/120 (79.17%), Query Frame = 0


Query: 21  GGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQ 80
           GGGGG GG  GG          G V+EQDRFLPIAN+ RIMK+ +P N KI+K+AKET+Q
Sbjct: 22  GGGGGGGGGGGG----------GGVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQ 81

Query: 81  ECVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLGFDDYAEPLKRYLVRYREMEGE 140
           ECVSEFISF+T EAS+KC+ EKRKT+NGDD+  A+ATLGF+DY EPLK YL +YREMEG+
Sbjct: 82  ECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD 131

[Close]

BLAST of Sed0012032 vs. ExPASy TrEMBL
Match: A0A6J1JM11 (nuclear transcription factor Y subunit B-1 OS=Cucurbita maxima OX=3661 GN=LOC111488106 PE=3 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 4.2e-67
Identity = 130/148 (87.84%), Postives = 137/148 (92.57%), Query Frame = 0


Query: 1   MDENTGKPERLVEFKYDFCTGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRI 60
           MD+NT  PERLVEFKYDF TGGGGGVGGSTGGSSEEA S   G VKEQDR LPIANVGRI
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEAS+KC +EKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLKRYLVRYREMEGERAHQDKGC 149
           DDYAEPL+RYL+RYRE+EGERA Q+KGC
Sbjct: 121 DDYAEPLRRYLIRYREIEGERAQQNKGC 148

[Close]

BLAST of Sed0012032 vs. ExPASy TrEMBL
Match: A0A1S3BT19 (nuclear transcription factor Y subunit B-1 OS=Cucumis melo OX=3656 GN=LOC103492848 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 4.6e-66
Identity = 129/148 (87.16%), Postives = 135/148 (91.22%), Query Frame = 0


Query: 1   MDENTGKPERLVEFKYDFCTGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRI 60
           MDENTG PER VEFKYDF  GG  GVGGSTGGSSEEA +   GVVKEQDR LPIANVGRI
Sbjct: 1   MDENTGMPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEAS+KC +EKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLKRYLVRYREMEGERAHQDKGC 149
           DDYAEPL+RYLVRYR+MEGERA Q+KGC
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGC 148

[Close]

BLAST of Sed0012032 vs. ExPASy TrEMBL
Match: A0A0A0K954 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G395250 PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 6.0e-66
Identity = 128/148 (86.49%), Postives = 135/148 (91.22%), Query Frame = 0


Query: 1   MDENTGKPERLVEFKYDFCTGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRI 60
           MDENTG PER +EFKYDF  GG  GVGGSTGGSSEEA +   GVVKEQDR LPIANVGRI
Sbjct: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEAS+KC +EKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLKRYLVRYREMEGERAHQDKGC 149
           DDYAEPL+RYLVRYR+MEGERA Q+KGC
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGC 148

[Close]

BLAST of Sed0012032 vs. ExPASy TrEMBL
Match: A0A6J1GM85 (nuclear transcription factor Y subunit B-1-like OS=Cucurbita moschata OX=3662 GN=LOC111455784 PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 1.0e-65
Identity = 130/149 (87.25%), Postives = 137/149 (91.95%), Query Frame = 0


Query: 1   MDENTGKPERLVEFKYDFCTGGG-GGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGR 60
           MD+NT  PERLVEFKYDF TGGG GGVGGSTGGSSEEA S   G VKEQDR LPIANVGR
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGGSGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGR 60

Query: 61  IMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLG 120
           IMKQILPPNAKISKEAKETMQECVSEFISFVTGEAS+KC +EKRKTVNGDDICCALATLG
Sbjct: 61  IMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLG 120

Query: 121 FDDYAEPLKRYLVRYREMEGERAHQDKGC 149
           FDDYAEPL+RYL+RYRE+EGERA Q+KGC
Sbjct: 121 FDDYAEPLRRYLIRYREIEGERAQQNKGC 149

[Close]

BLAST of Sed0012032 vs. ExPASy TrEMBL
Match: A0A5A7VLD2 (Nuclear transcription factor Y subunit B-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G002260 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.4e-62
Identity = 123/141 (87.23%), Postives = 129/141 (91.49%), Query Frame = 0


Query: 8   PERLVEFKYDFCTGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPP 67
           PER VEFKYDF  GG  GVGGSTGGSSEEA +   GVVKEQDR LPIANVGRIMKQILPP
Sbjct: 2   PERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPP 61

Query: 68  NAKISKEAKETMQECVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLGFDDYAEPL 127
           NAKISKEAKETMQECVSEFISFVTGEAS+KC +EKRKTVNGDDICCALATLGFDDYAEPL
Sbjct: 62  NAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPL 121

Query: 128 KRYLVRYREMEGERAHQDKGC 149
           +RYLVRYR+MEGERA Q+KGC
Sbjct: 122 RRYLVRYRDMEGERAQQNKGC 142

[Close]

BLAST of Sed0012032 vs. TAIR 10
Match: AT2G47810.1 (nuclear factor Y, subunit B5 )

HSP 1 Score: 167.5 bits (423), Expect = 7.8e-42
Identity = 83/105 (79.05%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 44  VVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKR 103
           +VKEQDR LPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEAS+KC +EKR
Sbjct: 48  MVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKR 107

Query: 104 KTVNGDDICCALATLGFDDYAEPLKRYLVRYREMEGERA-HQDKG 148
           KTVNGDDIC A+A LGFDDYA  LK+YL RYR +EGE+  H  KG
Sbjct: 108 KTVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEKPNHHGKG 152

[Close]

BLAST of Sed0012032 vs. TAIR 10
Match: AT3G53340.1 (nuclear factor Y, subunit B10 )

HSP 1 Score: 160.6 bits (405), Expect = 9.6e-40
Identity = 84/128 (65.62%), Postives = 99/128 (77.34%), Query Frame = 0


Query: 20  TGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETM 79
           TGGGGG G    G  +  RS     V+EQDRFLPIAN+ RIMK+ LP N KI+K+AKETM
Sbjct: 6   TGGGGG-GSHESGGDQSPRSLN---VREQDRFLPIANISRIMKRGLPLNGKIAKDAKETM 65

Query: 80  QECVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLGFDDYAEPLKRYLVRYREMEG 139
           QECVSEFISFVT EAS+KC+ EKRKT+NGDD+  A+ATLGF+DY +PLK YL+RYREMEG
Sbjct: 66  QECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREMEG 125

Query: 140 ERAHQDKG 148
           +     KG
Sbjct: 126 DTKGSGKG 129

[Close]

BLAST of Sed0012032 vs. TAIR 10
Match: AT5G47640.1 (nuclear factor Y, subunit B2 )

HSP 1 Score: 159.8 bits (403), Expect = 1.6e-39
Identity = 80/115 (69.57%), Postives = 96/115 (83.48%), Query Frame = 0


Query: 27  GGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEF 86
           GG   G+++  +SS     +EQDRFLPIANV RIMK+ LP NAKISK+AKETMQECVSEF
Sbjct: 9   GGGQNGNNQNGQSS--LSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEF 68

Query: 87  ISFVTGEASEKCREEKRKTVNGDDICCALATLGFDDYAEPLKRYLVRYREMEGER 142
           ISFVTGEAS+KC++EKRKT+NGDD+  A+ TLGF+DY EPLK YL R+RE+EGER
Sbjct: 69  ISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGER 121

[Close]

BLAST of Sed0012032 vs. TAIR 10
Match: AT2G13570.1 (nuclear factor Y, subunit B7 )

HSP 1 Score: 156.4 bits (394), Expect = 1.8e-38
Identity = 79/125 (63.20%), Postives = 95/125 (76.00%), Query Frame = 0


Query: 22  GGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQE 81
           G  GV  +  GS     ++     KEQDRFLPIANVGRIMK++LP N KISK+AKET+QE
Sbjct: 11  GSPGVAETNPGSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQE 70

Query: 82  CVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLGFDDYAEPLKRYLVRYREMEGER 141
           CVSEFISFVTGEAS+KC+ EKRKT+NGDDI  A+ TLGF+DY  PLK YL +YR+ EGE+
Sbjct: 71  CVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEK 130

Query: 142 AHQDK 147
            +  K
Sbjct: 131 VNSPK 135

[Close]

BLAST of Sed0012032 vs. TAIR 10
Match: AT2G38880.2 (nuclear factor Y, subunit B1 )

HSP 1 Score: 156.0 bits (393), Expect = 2.4e-38
Identity = 77/122 (63.11%), Postives = 94/122 (77.05%), Query Frame = 0


Query: 25  GVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVS 84
           G GG +GGS           V+EQDR+LPIAN+ RIMK+ LPPN KI K+AK+T+QECVS
Sbjct: 10  GDGGESGGS-----------VREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVS 69

Query: 85  EFISFVTGEASEKCREEKRKTVNGDDICCALATLGFDDYAEPLKRYLVRYREMEGERAHQ 144
           EFISF+T EAS+KC++EKRKTVNGDD+  A+ATLGF+DY EPLK YL RYRE+EG+    
Sbjct: 70  EFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGS 120

Query: 145 DK 147
            K
Sbjct: 130 GK 120

The following BLAST results are available for this feature:

BLAST of Sed0012032 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876756.1	1.7e-67	89.19	nuclear transcription factor Y subunit B-1-like [Benincasa hispida]	[more]
XP_023549145.1	8.6e-67	87.84	nuclear transcription factor Y subunit B-1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022991512.1	8.6e-67	87.84	nuclear transcription factor Y subunit B-1 [Cucurbita maxima]	[more]
XP_008451614.1	9.5e-66	87.16	PREDICTED: nuclear transcription factor Y subunit B-1 [Cucumis melo]	[more]
XP_011659350.1	1.2e-65	86.49	nuclear transcription factor Y subunit B-5 [Cucumis sativus]	[more]

BLAST of Sed0012032 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82248	1.1e-40	79.05	Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q67XJ2	1.3e-38	65.63	Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana OX=3702 GN=N...	[more]
Q9FGJ3	2.3e-38	69.57	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q0J7P4	6.7e-38	67.77	Nuclear transcription factor Y subunit B-11 OS=Oryza sativa subsp. japonica OX=3...	[more]
Q60EQ4	6.7e-38	65.83	Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39...	[more]

BLAST of Sed0012032 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JM11	4.2e-67	87.84	nuclear transcription factor Y subunit B-1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A1S3BT19	4.6e-66	87.16	nuclear transcription factor Y subunit B-1 OS=Cucumis melo OX=3656 GN=LOC1034928...	[more]
A0A0A0K954	6.0e-66	86.49	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G3952...	[more]
A0A6J1GM85	1.0e-65	87.25	nuclear transcription factor Y subunit B-1-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A5A7VLD2	2.4e-62	87.23	Nuclear transcription factor Y subunit B-1 OS=Cucumis melo var. makuwa OX=119469...	[more]

BLAST of Sed0012032 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47810.1	7.8e-42	79.05	nuclear factor Y, subunit B5	[more]
AT3G53340.1	9.6e-40	65.63	nuclear factor Y, subunit B10	[more]
AT5G47640.1	1.6e-39	69.57	nuclear factor Y, subunit B2	[more]
AT2G13570.1	1.8e-38	63.20	nuclear factor Y, subunit B7	[more]
AT2G38880.2	2.4e-38	63.11	nuclear factor Y, subunit B1	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 117..135 score: 37.56 coord: 98..116 score: 32.42 coord: 79..97 score: 52.03
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..43
None	No IPR available	PANTHER	PTHR11064:SF106	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5	coord: 33..146
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 51..115 e-value: 3.1E-27 score: 94.6
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 43..147 e-value: 7.5E-43 score: 147.7
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 48..144
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 33..146
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 82..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0012032.1	Sed0012032.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0043565	sequence-specific DNA binding