Sed0012023 (gene) Chayote v1

Overview


Name	Sed0012023
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Mitochondrial transcription termination factor family protein
Location	LG10: 36576871 .. 36578281 (+)
RNA-Seq Expression	Sed0012023
Synteny	Sed0012023

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAAAGTCATTCCCGAGTCCCACCCTGCCTCGTGGACATCTCTAGACCCTATCCACTTTGATTAAAAAAAAAAATCAAATAAAACCCTAAACCCACTTTCTTCTTCTTTCGATTTCTTCATCTTCCATTTCTTCCGACACTTTTCCTCTCTCATTTTTCCGGCAACCTCATGACCTCGCCGGTGGACTCCTTTTCTTCGATGTAGGCGTTCGTGATTTCACCCATTCATCTTCTCAAGAACAAGGAACCAGGTCAGTTTCTTTCTCATCACCTTCTTTACAATCATGTACCGTTTGATTCGCAGAATCATTCTTGTTAAAACTCCATCACTGATATCTCCTAGATTCTTATCAAGATCTTCCCAGATTGTATTGTATCCGAAATCTGCAAACGACGAAACCCCTGTTATTGCGTTCTTTAAGAATCATGGATTCTCTAAATCACAGATCTCTAAAATTGTCAAGAAATCGCCTAATCTTCTTTCAGCCAAACCCGAAAAAACCCTTTTGCCCAAATTGTTGTTCTTGCAATCCAAAGGCCTTTCTTCTCCTGAGATTGCTAAGTTAGTTTCTTCTTTTCCTTATATTCTTAATCGAAGTTTAAACAGACATATCATTCCATCATTCGATTTCTTGCTAGACTTGCTTCAATCGAATGAGAATACTCTTGCAGCCATAAAACGCTTTGTGGGTCTTCTCCATGTTGATCTTCAAAGCTCTGTTTGTCCCAATATTGAGATACTGAGACAAATTGGTGTTCCCGATTCGAACATTGCAACCATTCTTAAATTTCAGCCGAGAATGTTCTCGTTAAAAACGATTCGATTCGAGAAGAGTGTAGAGGAAGTTAAGGAAATGGGGTTCGATCCTATTCGGTTCGGGTTTGTGTATGCTGTTTCGGTTCTGCAATCGATGAGTAAATCTACATGGAAAAAGAAGGTTGAGGTTTATGGGAAATGGGGGTGGTCTGAAGAAGAGGTTGTTTCTGCTTTTGGAAGGCATCCAGGGTGTATGATTGCTTCTGAGGATAAGATTAATGGTGTTATGGATTATTTTGTGAACCAAATTGGATATGAGTCTTCTATCATTGCTAGAAATCCTACTTTAGTTACTCTTAGTTTGAAGAGTAGGATTGTTCCTAGAGGTTCTGTTTATCAAGTTTTGTTGTCTGAGGGTTTGATTAAGAAACATGCCAAATTTAGTTTTTTGTTTCTTTCTAATGAAAAAAAGTTCTTAAATAGTTTCATCAAGCCTCATGAGAAGAGCATTCCTAGATTGCTGAAGTTGTACCAGAAGAAATTAGAGGTTTCTAAAAGCAAGGGGGTTTAATCTCCTTTCAATGATAATAATGTTTACTTGTTTCTTTTTCTTGAAATGTCTATGAACCACTGAATTTATATGAGATGATGAG

mRNA sequence

AAGAAAGTCATTCCCGAGTCCCACCCTGCCTCGTGGACATCTCTAGACCCTATCCACTTTGATTAAAAAAAAAAATCAAATAAAACCCTAAACCCACTTTCTTCTTCTTTCGATTTCTTCATCTTCCATTTCTTCCGACACTTTTCCTCTCTCATTTTTCCGGCAACCTCATGACCTCGCCGGTGGACTCCTTTTCTTCGATGTAGGCGTTCGTGATTTCACCCATTCATCTTCTCAAGAACAAGGAACCAGGTCAGTTTCTTTCTCATCACCTTCTTTACAATCATGTACCGTTTGATTCGCAGAATCATTCTTGTTAAAACTCCATCACTGATATCTCCTAGATTCTTATCAAGATCTTCCCAGATTGTATTGTATCCGAAATCTGCAAACGACGAAACCCCTGTTATTGCGTTCTTTAAGAATCATGGATTCTCTAAATCACAGATCTCTAAAATTGTCAAGAAATCGCCTAATCTTCTTTCAGCCAAACCCGAAAAAACCCTTTTGCCCAAATTGTTGTTCTTGCAATCCAAAGGCCTTTCTTCTCCTGAGATTGCTAAGTTAGTTTCTTCTTTTCCTTATATTCTTAATCGAAGTTTAAACAGACATATCATTCCATCATTCGATTTCTTGCTAGACTTGCTTCAATCGAATGAGAATACTCTTGCAGCCATAAAACGCTTTGTGGGTCTTCTCCATGTTGATCTTCAAAGCTCTGTTTGTCCCAATATTGAGATACTGAGACAAATTGGTGTTCCCGATTCGAACATTGCAACCATTCTTAAATTTCAGCCGAGAATGTTCTCGTTAAAAACGATTCGATTCGAGAAGAGTGTAGAGGAAGTTAAGGAAATGGGGTTCGATCCTATTCGGTTCGGGTTTGTGTATGCTGTTTCGGTTCTGCAATCGATGAGTAAATCTACATGGAAAAAGAAGGTTGAGGTTTATGGGAAATGGGGGTGGTCTGAAGAAGAGGTTGTTTCTGCTTTTGGAAGGCATCCAGGGTGTATGATTGCTTCTGAGGATAAGATTAATGGTGTTATGGATTATTTTGTGAACCAAATTGGATATGAGTCTTCTATCATTGCTAGAAATCCTACTTTAGTTACTCTTAGTTTGAAGAGTAGGATTGTTCCTAGAGGTTCTGTTTATCAAGTTTTGTTGTCTGAGGGTTTGATTAAGAAACATGCCAAATTTAGTTTTTTGTTTCTTTCTAATGAAAAAAAGTTCTTAAATAGTTTCATCAAGCCTCATGAGAAGAGCATTCCTAGATTGCTGAAGTTGTACCAGAAGAAATTAGAGGTTTCTAAAAGCAAGGGGGTTTAATCTCCTTTCAATGATAATAATGTTTACTTGTTTCTTTTTCTTGAAATGTCTATGAACCACTGAATTTATATGAGATGATGAG

Coding sequence (CDS)

ATGTACCGTTTGATTCGCAGAATCATTCTTGTTAAAACTCCATCACTGATATCTCCTAGATTCTTATCAAGATCTTCCCAGATTGTATTGTATCCGAAATCTGCAAACGACGAAACCCCTGTTATTGCGTTCTTTAAGAATCATGGATTCTCTAAATCACAGATCTCTAAAATTGTCAAGAAATCGCCTAATCTTCTTTCAGCCAAACCCGAAAAAACCCTTTTGCCCAAATTGTTGTTCTTGCAATCCAAAGGCCTTTCTTCTCCTGAGATTGCTAAGTTAGTTTCTTCTTTTCCTTATATTCTTAATCGAAGTTTAAACAGACATATCATTCCATCATTCGATTTCTTGCTAGACTTGCTTCAATCGAATGAGAATACTCTTGCAGCCATAAAACGCTTTGTGGGTCTTCTCCATGTTGATCTTCAAAGCTCTGTTTGTCCCAATATTGAGATACTGAGACAAATTGGTGTTCCCGATTCGAACATTGCAACCATTCTTAAATTTCAGCCGAGAATGTTCTCGTTAAAAACGATTCGATTCGAGAAGAGTGTAGAGGAAGTTAAGGAAATGGGGTTCGATCCTATTCGGTTCGGGTTTGTGTATGCTGTTTCGGTTCTGCAATCGATGAGTAAATCTACATGGAAAAAGAAGGTTGAGGTTTATGGGAAATGGGGGTGGTCTGAAGAAGAGGTTGTTTCTGCTTTTGGAAGGCATCCAGGGTGTATGATTGCTTCTGAGGATAAGATTAATGGTGTTATGGATTATTTTGTGAACCAAATTGGATATGAGTCTTCTATCATTGCTAGAAATCCTACTTTAGTTACTCTTAGTTTGAAGAGTAGGATTGTTCCTAGAGGTTCTGTTTATCAAGTTTTGTTGTCTGAGGGTTTGATTAAGAAACATGCCAAATTTAGTTTTTTGTTTCTTTCTAATGAAAAAAAGTTCTTAAATAGTTTCATCAAGCCTCATGAGAAGAGCATTCCTAGATTGCTGAAGTTGTACCAGAAGAAATTAGAGGTTTCTAAAAGCAAGGGGGTTTAA

Protein sequence

MYRLIRRIILVKTPSLISPRFLSRSSQIVLYPKSANDETPVIAFFKNHGFSKSQISKIVKKSPNLLSAKPEKTLLPKLLFLQSKGLSSPEIAKLVSSFPYILNRSLNRHIIPSFDFLLDLLQSNENTLAAIKRFVGLLHVDLQSSVCPNIEILRQIGVPDSNIATILKFQPRMFSLKTIRFEKSVEEVKEMGFDPIRFGFVYAVSVLQSMSKSTWKKKVEVYGKWGWSEEEVVSAFGRHPGCMIASEDKINGVMDYFVNQIGYESSIIARNPTLVTLSLKSRIVPRGSVYQVLLSEGLIKKHAKFSFLFLSNEKKFLNSFIKPHEKSIPRLLKLYQKKLEVSKSKGV

Homology

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BLAST of Sed0012023 vs. NCBI nr
Match: XP_022973791.1 (transcription termination factor MTERF5, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 454.5 bits (1168), Expect = 8.1e-124
Identity = 245/361 (67.87%), Postives = 283/361 (78.39%), Query Frame = 0


Query: 1   MYRLIRRIILVKTP---------SLISPRFLSRSSQIVLYPKSA----------NDETPV 60
           MY L+RRIILV+TP          L S RFL  SS+IV  PKSA          ++E PV
Sbjct: 1   MYHLLRRIILVRTPLSVESFSGSPLKSLRFLLTSSEIVSSPKSASLASNFVDFESNEKPV 60

Query: 61  IAFFKNHGFSKSQISKIVKKSPNLLSAKPEKTLLPKLLFLQSKGLSSPEIAKLVSSFPYI 120
           I FF+NHGFSKSQIS++VKK P +LS  PEKTLLPKLLFLQSKGLSSPE+AKLV  FP I
Sbjct: 61  ILFFENHGFSKSQISELVKKFPQVLSTNPEKTLLPKLLFLQSKGLSSPEVAKLVCGFPGI 120

Query: 121 LNRSLNRHIIPSFDFLLDLLQSNENTLAAIKRFVGLLHVDLQSSVCPNIEILRQIGVPDS 180
           L RSLNR IIPSF+++ DLLQ+ E T+AAIKRF GLL  DLQ+S  PN+EILRQIGVPDS
Sbjct: 121 LKRSLNRQIIPSFNYIHDLLQTEEKTIAAIKRFGGLLTWDLQNSARPNVEILRQIGVPDS 180

Query: 181 NIATILKFQPRMFSLKTIRFEKSVEEVKEMGFDPIRFGFVYAVSVLQSMSKSTWKKKVEV 240
           NIA+IL+ QPR+F +  IRF K VEEVKEMGF+P+R  FV AV  L++MSKSTWKKKVEV
Sbjct: 181 NIASILRSQPRVFLISPIRFRKIVEEVKEMGFNPLRLKFVLAVFALRAMSKSTWKKKVEV 240

Query: 241 YGKWGWSEEEVVSAFGRHPGCMIASEDKINGVMDYFVNQIGYESSIIARNPTLVTLSLKS 300
           Y KWGW EEE++ AFGRHP CM+AS DKINGVMD+FVNQIG ESS IAR P+L++ SLK 
Sbjct: 241 YRKWGWPEEEILFAFGRHPWCMMASADKINGVMDFFVNQIGCESSYIARIPSLISHSLKK 300

Query: 301 RIVPRGSVYQVLLSEGLIKKHAKFSFLFLSNEKKFLNSFIKPHEKSIPRLLKLYQKKLEV 343
           RIVPRGSVYQVLLS GLIKKH     LF+S EK+FL+ FI+PH+K IP LLKLY +KLEV
Sbjct: 301 RIVPRGSVYQVLLSNGLIKKHVNLPLLFVSTEKRFLDKFIEPHKKRIPGLLKLYTEKLEV 360

[Close]

BLAST of Sed0012023 vs. NCBI nr
Match: XP_023521670.1 (transcription termination factor MTERF5, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 443.7 bits (1140), Expect = 1.4e-120
Identity = 238/361 (65.93%), Postives = 281/361 (77.84%), Query Frame = 0


Query: 1   MYRLIRRIILVKTP---------SLISPRFLSRSSQIVLYPKSA----------NDETPV 60
           MY L+RRIILV+TP          L S RFL  SS+IV  PKSA          ++E PV
Sbjct: 1   MYHLLRRIILVRTPLSVGSFSASPLKSLRFLLTSSEIVSSPKSASLASNFVDFESNEKPV 60

Query: 61  IAFFKNHGFSKSQISKIVKKSPNLLSAKPEKTLLPKLLFLQSKGLSSPEIAKLVSSFPYI 120
           I  FKNHGFSKSQIS+++KK P +LS  PEKTLLPKLLFLQSKGLSSPE+AKLV  FP I
Sbjct: 61  ILLFKNHGFSKSQISELIKKFPQVLSTDPEKTLLPKLLFLQSKGLSSPEVAKLVCGFPAI 120

Query: 121 LNRSLNRHIIPSFDFLLDLLQSNENTLAAIKRFVGLLHVDLQSSVCPNIEILRQIGVPDS 180
           L RSLNR IIPSF+++ DLLQ+ E T+AAIKR  GLL  DL +S  PN+EILRQIGVPDS
Sbjct: 121 LKRSLNRQIIPSFNYIHDLLQTEEKTIAAIKRCGGLLTWDLHNSARPNVEILRQIGVPDS 180

Query: 181 NIATILKFQPRMFSLKTIRFEKSVEEVKEMGFDPIRFGFVYAVSVLQSMSKSTWKKKVEV 240
           NIA+IL+ QPR+F + +IRF++ VEEVKEMGF+P+R  FV AV  L++MSKSTWKKKVEV
Sbjct: 181 NIASILRSQPRVFLISSIRFKEIVEEVKEMGFNPLRLKFVVAVFALRAMSKSTWKKKVEV 240

Query: 241 YGKWGWSEEEVVSAFGRHPGCMIASEDKINGVMDYFVNQIGYESSIIARNPTLVTLSLKS 300
           Y KWGW EEE++ AF RHP CM+ASEDKINGV+D+FVNQIG ESS IAR P+L++ SLK 
Sbjct: 241 YRKWGWPEEEILFAFRRHPCCMMASEDKINGVVDFFVNQIGCESSYIARIPSLISHSLKK 300

Query: 301 RIVPRGSVYQVLLSEGLIKKHAKFSFLFLSNEKKFLNSFIKPHEKSIPRLLKLYQKKLEV 343
           R+VPRGSVYQVLLS GLIKKH     LF+S EK+FL+ FI+PH+K IP L KLY +KLEV
Sbjct: 301 RLVPRGSVYQVLLSNGLIKKHVNLPLLFVSTEKRFLDKFIEPHKKRIPELFKLYTEKLEV 360

[Close]

BLAST of Sed0012023 vs. NCBI nr
Match: XP_023539068.1 (transcription termination factor MTERF5, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 442.6 bits (1137), Expect = 3.2e-120
Identity = 237/361 (65.65%), Postives = 282/361 (78.12%), Query Frame = 0


Query: 1   MYRLIRRIILVKTPSLI-----SP----RFLSRSSQIVLYPKSA----------NDETPV 60
           MY L+RRIILV+TP  +     SP    RFL  SS+IV  PKSA          ++E PV
Sbjct: 1   MYHLLRRIILVRTPLSVGSFSGSPLKCLRFLLTSSEIVSSPKSASLASNFVDFESNEKPV 60

Query: 61  IAFFKNHGFSKSQISKIVKKSPNLLSAKPEKTLLPKLLFLQSKGLSSPEIAKLVSSFPYI 120
           I  FKNHGFSKSQIS+++KK P ++S  PEKTLLPKLLFLQSKGLSSPE+AKLV  FP I
Sbjct: 61  ILLFKNHGFSKSQISELIKKFPQVISTNPEKTLLPKLLFLQSKGLSSPEVAKLVCGFPAI 120

Query: 121 LNRSLNRHIIPSFDFLLDLLQSNENTLAAIKRFVGLLHVDLQSSVCPNIEILRQIGVPDS 180
           L RSLNR IIPSF+++ DLLQ+ E T+AAIKR  GLL  DL +S  PN+EILRQIGVPDS
Sbjct: 121 LKRSLNRQIIPSFNYIHDLLQTEEKTIAAIKRCGGLLTWDLHNSARPNVEILRQIGVPDS 180

Query: 181 NIATILKFQPRMFSLKTIRFEKSVEEVKEMGFDPIRFGFVYAVSVLQSMSKSTWKKKVEV 240
           NIA+IL+ QPR+F + +IRF++ VEEVKEMGF+P+R  FV AV  L++MSKSTWKKKVEV
Sbjct: 181 NIASILRSQPRVFLISSIRFKEIVEEVKEMGFNPLRLKFVVAVFALRAMSKSTWKKKVEV 240

Query: 241 YGKWGWSEEEVVSAFGRHPGCMIASEDKINGVMDYFVNQIGYESSIIARNPTLVTLSLKS 300
           Y KWGW EEE++ AF RHP CM+ASEDKINGV+D+FVNQIG ESS IAR P+L++ SLK 
Sbjct: 241 YRKWGWPEEEILFAFRRHPCCMMASEDKINGVVDFFVNQIGCESSYIARIPSLISHSLKK 300

Query: 301 RIVPRGSVYQVLLSEGLIKKHAKFSFLFLSNEKKFLNSFIKPHEKSIPRLLKLYQKKLEV 343
           R+VPRGSVYQVLLS GLIKKH     LF+S EK+FL+ FI+PH+K IP L KLY +KLEV
Sbjct: 301 RLVPRGSVYQVLLSNGLIKKHVNLPLLFVSTEKRFLDKFIEPHKKRIPELFKLYTEKLEV 360

[Close]

BLAST of Sed0012023 vs. NCBI nr
Match: XP_022933339.1 (uncharacterized protein LOC111440613 isoform X2 [Cucurbita moschata])

HSP 1 Score: 428.7 bits (1101), Expect = 4.7e-116
Identity = 229/361 (63.43%), Postives = 278/361 (77.01%), Query Frame = 0


Query: 4   LIRRIILVKTPS-----------LISPRFLSRSSQIVLYPKSA----------NDETPVI 63
           L+RRI +V+ PS           L S R+LS SS+I   PKSA          NDE PVI
Sbjct: 97  LLRRINVVRQPSSVFAHGFSESPLKSLRYLSTSSEIASSPKSASPDSNKVKPENDEKPVI 156

Query: 64  AFFKNHGFSKSQISKIVKKSPNLLSAKPEKTLLPKLLFLQSKGLSSPEIAKLVSSFPYIL 123
            FF+NHGFSK+QIS++VKK P +LSA PEKTLLPKLLF QSKGLSSPEIAKLV  FP IL
Sbjct: 157 VFFENHGFSKTQISELVKKFPQVLSANPEKTLLPKLLFFQSKGLSSPEIAKLVCGFPSIL 216

Query: 124 NRSLNRHIIPSFDFLLDLLQSNENTLAAIKRFVGLLHVDLQSSVCPNIEILRQIGVPDSN 183
            RSL+R IIP+FD++ +LLQ+ E T+A+IKRF+G+L  DLQ    PN+E L QIGVPDS 
Sbjct: 217 MRSLDRKIIPAFDYIQELLQTEEKTIASIKRFLGILTWDLQIYARPNVETLIQIGVPDSK 276

Query: 184 IATILKFQPRMFSLKTIRFEKSVEEVKEMGFDPIRFGFVYAVSVLQSMSKSTWKKKVEVY 243
           IATIL++QPR+F + T+RF++ VEEVKEMGF+P+R  FV AV  +++MSKSTW+KKVEVY
Sbjct: 277 IATILEYQPRVFLVNTVRFKEIVEEVKEMGFNPLRLNFVLAVFAMRAMSKSTWRKKVEVY 336

Query: 244 GKWGWSEEEVVSAFGRHPGCMIASEDKINGVMDYFVNQIGYESSIIARNPTLVTLSLKSR 303
            KWGW EEE++SAF RHP CM+ASEDKINGVMD+FVN+IG E S IA+ P L++LSLK R
Sbjct: 337 KKWGWPEEEILSAFRRHPWCMMASEDKINGVMDFFVNKIGCEPSYIAKRPALISLSLKKR 396

Query: 304 IVPRGSVYQVLLSEGLIKKHAKFSFLFLSNEKKFLNSFIKPHEKSIPRLLKLYQKKLEVS 344
           IVPRGSVYQVLLS+GLIKK     FLF S E +FL+ FI PH++ IP LLKLY++KLE S
Sbjct: 397 IVPRGSVYQVLLSKGLIKKDVNLPFLFESAENRFLDKFIDPHKELIPGLLKLYKEKLEDS 456

[Close]

BLAST of Sed0012023 vs. NCBI nr
Match: XP_022933338.1 (uncharacterized protein LOC111440613 isoform X1 [Cucurbita moschata])

HSP 1 Score: 428.7 bits (1101), Expect = 4.7e-116
Identity = 229/361 (63.43%), Postives = 278/361 (77.01%), Query Frame = 0


Query: 4   LIRRIILVKTPS-----------LISPRFLSRSSQIVLYPKSA----------NDETPVI 63
           L+RRI +V+ PS           L S R+LS SS+I   PKSA          NDE PVI
Sbjct: 98  LLRRINVVRQPSSVFAHGFSESPLKSLRYLSTSSEIASSPKSASPDSNKVKPENDEKPVI 157

Query: 64  AFFKNHGFSKSQISKIVKKSPNLLSAKPEKTLLPKLLFLQSKGLSSPEIAKLVSSFPYIL 123
            FF+NHGFSK+QIS++VKK P +LSA PEKTLLPKLLF QSKGLSSPEIAKLV  FP IL
Sbjct: 158 VFFENHGFSKTQISELVKKFPQVLSANPEKTLLPKLLFFQSKGLSSPEIAKLVCGFPSIL 217

Query: 124 NRSLNRHIIPSFDFLLDLLQSNENTLAAIKRFVGLLHVDLQSSVCPNIEILRQIGVPDSN 183
            RSL+R IIP+FD++ +LLQ+ E T+A+IKRF+G+L  DLQ    PN+E L QIGVPDS 
Sbjct: 218 MRSLDRKIIPAFDYIQELLQTEEKTIASIKRFLGILTWDLQIYARPNVETLIQIGVPDSK 277

Query: 184 IATILKFQPRMFSLKTIRFEKSVEEVKEMGFDPIRFGFVYAVSVLQSMSKSTWKKKVEVY 243
           IATIL++QPR+F + T+RF++ VEEVKEMGF+P+R  FV AV  +++MSKSTW+KKVEVY
Sbjct: 278 IATILEYQPRVFLVNTVRFKEIVEEVKEMGFNPLRLNFVLAVFAMRAMSKSTWRKKVEVY 337

Query: 244 GKWGWSEEEVVSAFGRHPGCMIASEDKINGVMDYFVNQIGYESSIIARNPTLVTLSLKSR 303
            KWGW EEE++SAF RHP CM+ASEDKINGVMD+FVN+IG E S IA+ P L++LSLK R
Sbjct: 338 KKWGWPEEEILSAFRRHPWCMMASEDKINGVMDFFVNKIGCEPSYIAKRPALISLSLKKR 397

Query: 304 IVPRGSVYQVLLSEGLIKKHAKFSFLFLSNEKKFLNSFIKPHEKSIPRLLKLYQKKLEVS 344
           IVPRGSVYQVLLS+GLIKK     FLF S E +FL+ FI PH++ IP LLKLY++KLE S
Sbjct: 398 IVPRGSVYQVLLSKGLIKKDVNLPFLFESAENRFLDKFIDPHKELIPGLLKLYKEKLEDS 457

[Close]

BLAST of Sed0012023 vs. ExPASy Swiss-Prot
Match: Q9SZL6 (Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTERF6 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.8e-09
Identity = 66/300 (22.00%), Postives = 129/300 (43.00%), Query Frame = 0


Query: 41  VIAFFKNHGFSKSQISKIVKKSPNLLSAKPEKTLLPKLLFLQSKGLSSPEIAKLVSSFPY 100
           ++ FF++ GF    I K+++K   L  A+ +             G+   ++  +VS  P 
Sbjct: 9   IMWFFRDKGFDDPSIDKMLRKCKQLEKAQSDVASENWDYLSNIVGIQERKLPYIVSRCPK 68

Query: 101 ILNRSLNRHIIPSFDFLLDLLQSNENTLAAIKRFVGLLHVDLQSSVCPNIEILRQIGVPD 160
           IL   L+  +IP  + L  L ++     +AI +F  +L   ++  +CP +   + +GVP+
Sbjct: 69  ILTLRLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQALGVPE 128

Query: 161 SNIATILKFQPRMFSLK-TIRFEKSVEEVKEMGFDP--------IRFGFVYAVSVLQSMS 220
           + +  ++ F PR+ S     +    V  +  +G D         ++  F+   SV + + 
Sbjct: 129 TQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVDKRLR 188

Query: 221 KSTWKKKVEVYGKWGWSEEEVVSAFGRHPGCMIASEDKINGVMDYFVNQIGYESSIIAR- 280
            +T   K  V    G SE+ + S     P  +    +KI      ++ + G+  S IA  
Sbjct: 189 PTTEFLKSSV----GLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATM 248

Query: 281 ---NPTLVTLSLKSRIVPRGSVYQVLLSEGLIKKHAKFSFLFLSNEKKFLNSFIKPHEKS 328
               P ++  S+K+ + PR      ++  G+  + A +   F    KK + S  K  +K+
Sbjct: 249 VTGYPQILIKSVKNSLQPRIRFLVQVMGRGM-DEVASYPEFFHHGLKKKVESRFKLVKKN 303

[Close]

BLAST of Sed0012023 vs. ExPASy Swiss-Prot
Match: Q9ZT96 (Transcription termination factor MTERF4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF4 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 9.0e-09
Identity = 64/304 (21.05%), Postives = 132/304 (43.42%), Query Frame = 0


Query: 21  FLSRSSQIVLYPKSANDETPVIAFFKNHGFSKSQISKIVKKSPNLLSAKPEKTLLPKLLF 80
           FL R  Q VL+     D  PV+ + +      S + +++++ P +L  K E T+   + +
Sbjct: 199 FLRRYPQ-VLHSSVVIDLAPVVKYLQGLDIKPSDVPRVLERYPEVLGFKLEGTMSTSVAY 258

Query: 81  LQSKGLSSPEIAKLVSSFPYILNRSLNRHIIPSFDFLLDLLQSNENTLAAIKRFVGLLHV 140
           L   G++  EI  +++ +P IL   + R I P  ++L  L          I++   +L  
Sbjct: 259 LVGIGVARREIGGILTRYPEILGMRVARIIKPLVEYLEVLGIPRLAAARLIEKRPHILGF 318

Query: 141 DLQSSVCPNIEILRQIGVPDSNIATILKFQPRMFSLKTIRFEKSVEEVKEMGFDPIRF-- 200
           +L  +V PN++IL+   V ++++ +I+   P +     I  +  ++  +++    I    
Sbjct: 319 ELDDTVKPNVQILQDFNVRETSLPSIIAQYPEIIG---IDLKPKLDTQRKLLCSAIHLNP 378

Query: 201 ----GFVYAVSVLQSMSKSTWKKKVEVYGKWGWSEEEVVSAFGRHPGCMIASEDKINGVM 260
                 +  +    S+S+S   K ++   K G+S ++        P  +  +   +    
Sbjct: 379 EDLGSLIERMPQFVSLSESPMLKHIDFLTKCGFSIDQTREMVIGCPQVLALNLGIMKLSF 438

Query: 261 DYFVNQIGYESSIIARNPTLVTLSLKSRIVPRGSVYQVLLSEGLIKKHAKFSFLFLSN-- 317
           +YF  ++      +   P   T  L+S + PR         + +IKK  K S  ++ N  
Sbjct: 439 EYFQKEMKRPLQDLVDFPAFFTYGLESTVKPR--------HKKIIKKGIKCSLAWMLNCS 490

[Close]

BLAST of Sed0012023 vs. ExPASy Swiss-Prot
Match: B6TGN4 (Transcription termination factor MTERF4, chloroplastic OS=Zea mays OX=4577 GN=MTERF4 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.4e-08
Identity = 61/276 (22.10%), Postives = 114/276 (41.30%), Query Frame = 0


Query: 19  PRFLSRSSQIVLYPKSANDETPVIAFFKNHGFSKSQISKIVKKSPNLLSAKPEKTLLPKL 78
           P  L R  Q VL+     D  PV+ + +      + + +++++ P LL  K E T+   +
Sbjct: 153 PDLLRRYPQ-VLHASVVVDLAPVVKYLQGMDVRPTDVPRVLERYPELLGFKLEGTMSTSV 212

Query: 79  LFLQSKGLSSPEIAKLVSSFPYILNRSLNRHIIPSFDFLLDLLQSNENTLAAIKRFVGLL 138
            +L   G+   ++  +++ FP +L   + + I P  + L  +          I++   +L
Sbjct: 213 AYLVGIGVGRRQVGSVITRFPEVLGMRVGKIIKPFVEHLEGIGLQRLAIARIIEKKPYVL 272

Query: 139 HVDLQSSVCPNIEILRQIGVPDSNIATILKFQPRMFSL--------KTIRFEKSVEEVKE 198
              LQ  V PNIE L  IGV    +A+I+   P +  L        +   FE S+   +E
Sbjct: 273 GFGLQEKVKPNIEALVDIGVRKEALASIVMQYPDVLGLELRDKLVAQQSLFESSILVSRE 332

Query: 199 MGFDPIRFGFVYAVSVLQSMSKSTWKKKVEVYGKWGWSEEEVVSAFGRHPGCMIASEDKI 258
             F  +      A+    S+ ++   K V      G+   +V       P  +  + D +
Sbjct: 333 -DFGRVLERMPQAI----SLGRAAVLKHVNFLTACGFMLSQVSKMVVACPQLLALNIDIM 392

Query: 259 NGVMDYFVNQIGYESSIIARNPTLVTLSLKSRIVPR 287
               +YF N++  +   +   P   T  ++S + PR
Sbjct: 393 RMNFEYFKNEMERDLEELVEFPAFFTYGIESTVRPR 422

[Close]

BLAST of Sed0012023 vs. ExPASy Swiss-Prot
Match: Q6AUK6 (Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0404000 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.7e-07
Identity = 55/271 (20.30%), Postives = 112/271 (41.33%), Query Frame = 0


Query: 19  PRFLSRSSQIVLYPKSANDETPVIAFFKNHGFSKSQISKIVKKSPNLLSAKPEKTLLPKL 78
           P  L R  Q VL+     D  PV+ + +        + +++++ P LL  K E T+   +
Sbjct: 162 PDLLRRYPQ-VLHASVVVDLAPVVKYLQGMDVRPHDVPRVLERYPELLGFKLEGTMSTSI 221

Query: 79  LFLQSKGLSSPEIAKLVSSFPYILNRSLNRHIIPSFDFLLDLLQSNENTLAAIKRFVGLL 138
            +L   G++  ++  +++ FP +L   + + I P  + L  +          I++   +L
Sbjct: 222 AYLVGIGVARRQVGSVITRFPEVLGMRVGKIIKPFVEHLEGIGLQRLAIARIIEKKPYVL 281

Query: 139 HVDLQSSVCPNIEILRQIGVPDSNIATILKFQPRMFSLK---TIRFEKSVEEVKEMGFDP 198
              L+  V PNIE L + GV    +A I+   P +  ++    +  ++S+ E   +    
Sbjct: 282 GFGLEDKVKPNIEALLEFGVRKEALAFIVAQYPDILGIELRDKLATQQSLFESSILVSSE 341

Query: 199 IRFGFVYAVSVLQSMSKSTWKKKVEVYGKWGWSEEEVVSAFGRHPGCMIASEDKINGVMD 258
                +  +    S+ ++   K V      G+   +V       P  +  + D +    +
Sbjct: 342 DFGRVIERMPQAISLGRTAVLKHVNFLTSCGFLLSQVSKMVVACPQLLALNMDIMKMSFE 401

Query: 259 YFVNQIGYESSIIARNPTLVTLSLKSRIVPR 287
           YF N++  +   +   P   T  L+S + PR
Sbjct: 402 YFQNEMERDLEELVEFPAFFTYGLESTVRPR 431

[Close]

BLAST of Sed0012023 vs. ExPASy Swiss-Prot
Match: F4JVI3 (Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF5 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.2e-07
Identity = 64/260 (24.62%), Postives = 100/260 (38.46%), Query Frame = 0


Query: 40  PVIAFFKNHGFSKSQISKIVKKSPNLLSAKPEKTLLPKLLFLQSKGLSSPEIAKLVSSFP 99
           PV+ F  + G  KS I  I+ K P +        L P + FL++ G+   + AK++S FP
Sbjct: 234 PVVEFLLDLGIPKSDIPTILCKRPQICGISLTDNLKPTMAFLETLGIDKNQWAKIISRFP 293

Query: 100 YILNRSLNRHIIPSFDFLLDLLQSNENTLAAIKRFVGLLHVDLQSSVCPNIEILRQIGVP 159
            IL  S  + +  + +FL     + E     + R   ++   ++  + P +E  R + V 
Sbjct: 294 AILTYS-RQKLTSTVEFLSQTGLTEEQIGRILTRCPNIMSYSVEDKLRPTMEYFRSLNV- 353

Query: 160 DSNIATILKFQPRMFSLKTIRFEKSVEEV---KEMGFDPI-----RFGFVYAVSVLQSMS 219
             ++A +L   P+ F L      K V E    K  G D I     R+G +Y         
Sbjct: 354 --DVAVLLHRCPQTFGLSIESNLKPVTEFFLEKGFGLDEIGIMISRYGALY--------- 413

Query: 220 KSTWKKKVEVYGKWGWSEEEVVSAFGRHPGCMIASEDKINGVMDYFVNQIGYESSIIARN 279
             T+  K  V  KW                             DYF   + Y  S + + 
Sbjct: 414 --TFSLKENVMPKW-----------------------------DYF-QTMDYPKSELVKF 448

Query: 280 PTLVTLSLKSRIVPRGSVYQ 292
           P     SL+ RI PR  + Q
Sbjct: 474 PQFFGYSLQERIKPRYELVQ 448

[Close]

BLAST of Sed0012023 vs. ExPASy TrEMBL
Match: A0A6J1I9L4 (transcription termination factor MTERF5, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111472348 PE=3 SV=1)

HSP 1 Score: 454.5 bits (1168), Expect = 3.9e-124
Identity = 245/361 (67.87%), Postives = 283/361 (78.39%), Query Frame = 0


Query: 1   MYRLIRRIILVKTP---------SLISPRFLSRSSQIVLYPKSA----------NDETPV 60
           MY L+RRIILV+TP          L S RFL  SS+IV  PKSA          ++E PV
Sbjct: 1   MYHLLRRIILVRTPLSVESFSGSPLKSLRFLLTSSEIVSSPKSASLASNFVDFESNEKPV 60

Query: 61  IAFFKNHGFSKSQISKIVKKSPNLLSAKPEKTLLPKLLFLQSKGLSSPEIAKLVSSFPYI 120
           I FF+NHGFSKSQIS++VKK P +LS  PEKTLLPKLLFLQSKGLSSPE+AKLV  FP I
Sbjct: 61  ILFFENHGFSKSQISELVKKFPQVLSTNPEKTLLPKLLFLQSKGLSSPEVAKLVCGFPGI 120

Query: 121 LNRSLNRHIIPSFDFLLDLLQSNENTLAAIKRFVGLLHVDLQSSVCPNIEILRQIGVPDS 180
           L RSLNR IIPSF+++ DLLQ+ E T+AAIKRF GLL  DLQ+S  PN+EILRQIGVPDS
Sbjct: 121 LKRSLNRQIIPSFNYIHDLLQTEEKTIAAIKRFGGLLTWDLQNSARPNVEILRQIGVPDS 180

Query: 181 NIATILKFQPRMFSLKTIRFEKSVEEVKEMGFDPIRFGFVYAVSVLQSMSKSTWKKKVEV 240
           NIA+IL+ QPR+F +  IRF K VEEVKEMGF+P+R  FV AV  L++MSKSTWKKKVEV
Sbjct: 181 NIASILRSQPRVFLISPIRFRKIVEEVKEMGFNPLRLKFVLAVFALRAMSKSTWKKKVEV 240

Query: 241 YGKWGWSEEEVVSAFGRHPGCMIASEDKINGVMDYFVNQIGYESSIIARNPTLVTLSLKS 300
           Y KWGW EEE++ AFGRHP CM+AS DKINGVMD+FVNQIG ESS IAR P+L++ SLK 
Sbjct: 241 YRKWGWPEEEILFAFGRHPWCMMASADKINGVMDFFVNQIGCESSYIARIPSLISHSLKK 300

Query: 301 RIVPRGSVYQVLLSEGLIKKHAKFSFLFLSNEKKFLNSFIKPHEKSIPRLLKLYQKKLEV 343
           RIVPRGSVYQVLLS GLIKKH     LF+S EK+FL+ FI+PH+K IP LLKLY +KLEV
Sbjct: 301 RIVPRGSVYQVLLSNGLIKKHVNLPLLFVSTEKRFLDKFIEPHKKRIPGLLKLYTEKLEV 360

[Close]

BLAST of Sed0012023 vs. ExPASy TrEMBL
Match: A0A6J1EZH0 (uncharacterized protein LOC111440613 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111440613 PE=3 SV=1)

HSP 1 Score: 428.7 bits (1101), Expect = 2.3e-116
Identity = 229/361 (63.43%), Postives = 278/361 (77.01%), Query Frame = 0


Query: 4   LIRRIILVKTPS-----------LISPRFLSRSSQIVLYPKSA----------NDETPVI 63
           L+RRI +V+ PS           L S R+LS SS+I   PKSA          NDE PVI
Sbjct: 97  LLRRINVVRQPSSVFAHGFSESPLKSLRYLSTSSEIASSPKSASPDSNKVKPENDEKPVI 156

Query: 64  AFFKNHGFSKSQISKIVKKSPNLLSAKPEKTLLPKLLFLQSKGLSSPEIAKLVSSFPYIL 123
            FF+NHGFSK+QIS++VKK P +LSA PEKTLLPKLLF QSKGLSSPEIAKLV  FP IL
Sbjct: 157 VFFENHGFSKTQISELVKKFPQVLSANPEKTLLPKLLFFQSKGLSSPEIAKLVCGFPSIL 216

Query: 124 NRSLNRHIIPSFDFLLDLLQSNENTLAAIKRFVGLLHVDLQSSVCPNIEILRQIGVPDSN 183
            RSL+R IIP+FD++ +LLQ+ E T+A+IKRF+G+L  DLQ    PN+E L QIGVPDS 
Sbjct: 217 MRSLDRKIIPAFDYIQELLQTEEKTIASIKRFLGILTWDLQIYARPNVETLIQIGVPDSK 276

Query: 184 IATILKFQPRMFSLKTIRFEKSVEEVKEMGFDPIRFGFVYAVSVLQSMSKSTWKKKVEVY 243
           IATIL++QPR+F + T+RF++ VEEVKEMGF+P+R  FV AV  +++MSKSTW+KKVEVY
Sbjct: 277 IATILEYQPRVFLVNTVRFKEIVEEVKEMGFNPLRLNFVLAVFAMRAMSKSTWRKKVEVY 336

Query: 244 GKWGWSEEEVVSAFGRHPGCMIASEDKINGVMDYFVNQIGYESSIIARNPTLVTLSLKSR 303
            KWGW EEE++SAF RHP CM+ASEDKINGVMD+FVN+IG E S IA+ P L++LSLK R
Sbjct: 337 KKWGWPEEEILSAFRRHPWCMMASEDKINGVMDFFVNKIGCEPSYIAKRPALISLSLKKR 396

Query: 304 IVPRGSVYQVLLSEGLIKKHAKFSFLFLSNEKKFLNSFIKPHEKSIPRLLKLYQKKLEVS 344
           IVPRGSVYQVLLS+GLIKK     FLF S E +FL+ FI PH++ IP LLKLY++KLE S
Sbjct: 397 IVPRGSVYQVLLSKGLIKKDVNLPFLFESAENRFLDKFIDPHKELIPGLLKLYKEKLEDS 456

[Close]

BLAST of Sed0012023 vs. ExPASy TrEMBL
Match: A0A6J1F4G8 (uncharacterized protein LOC111440613 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111440613 PE=3 SV=1)

HSP 1 Score: 428.7 bits (1101), Expect = 2.3e-116
Identity = 229/361 (63.43%), Postives = 278/361 (77.01%), Query Frame = 0


Query: 4   LIRRIILVKTPS-----------LISPRFLSRSSQIVLYPKSA----------NDETPVI 63
           L+RRI +V+ PS           L S R+LS SS+I   PKSA          NDE PVI
Sbjct: 98  LLRRINVVRQPSSVFAHGFSESPLKSLRYLSTSSEIASSPKSASPDSNKVKPENDEKPVI 157

Query: 64  AFFKNHGFSKSQISKIVKKSPNLLSAKPEKTLLPKLLFLQSKGLSSPEIAKLVSSFPYIL 123
            FF+NHGFSK+QIS++VKK P +LSA PEKTLLPKLLF QSKGLSSPEIAKLV  FP IL
Sbjct: 158 VFFENHGFSKTQISELVKKFPQVLSANPEKTLLPKLLFFQSKGLSSPEIAKLVCGFPSIL 217

Query: 124 NRSLNRHIIPSFDFLLDLLQSNENTLAAIKRFVGLLHVDLQSSVCPNIEILRQIGVPDSN 183
            RSL+R IIP+FD++ +LLQ+ E T+A+IKRF+G+L  DLQ    PN+E L QIGVPDS 
Sbjct: 218 MRSLDRKIIPAFDYIQELLQTEEKTIASIKRFLGILTWDLQIYARPNVETLIQIGVPDSK 277

Query: 184 IATILKFQPRMFSLKTIRFEKSVEEVKEMGFDPIRFGFVYAVSVLQSMSKSTWKKKVEVY 243
           IATIL++QPR+F + T+RF++ VEEVKEMGF+P+R  FV AV  +++MSKSTW+KKVEVY
Sbjct: 278 IATILEYQPRVFLVNTVRFKEIVEEVKEMGFNPLRLNFVLAVFAMRAMSKSTWRKKVEVY 337

Query: 244 GKWGWSEEEVVSAFGRHPGCMIASEDKINGVMDYFVNQIGYESSIIARNPTLVTLSLKSR 303
            KWGW EEE++SAF RHP CM+ASEDKINGVMD+FVN+IG E S IA+ P L++LSLK R
Sbjct: 338 KKWGWPEEEILSAFRRHPWCMMASEDKINGVMDFFVNKIGCEPSYIAKRPALISLSLKKR 397

Query: 304 IVPRGSVYQVLLSEGLIKKHAKFSFLFLSNEKKFLNSFIKPHEKSIPRLLKLYQKKLEVS 344
           IVPRGSVYQVLLS+GLIKK     FLF S E +FL+ FI PH++ IP LLKLY++KLE S
Sbjct: 398 IVPRGSVYQVLLSKGLIKKDVNLPFLFESAENRFLDKFIDPHKELIPGLLKLYKEKLEDS 457

[Close]

BLAST of Sed0012023 vs. ExPASy TrEMBL
Match: A0A6J1GVP2 (uncharacterized protein LOC111457902 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457902 PE=3 SV=1)

HSP 1 Score: 426.0 bits (1094), Expect = 1.5e-115
Identity = 228/361 (63.16%), Postives = 276/361 (76.45%), Query Frame = 0


Query: 4   LIRRIILVKTPS-----------LISPRFLSRSSQIVLYPKSA----------NDETPVI 63
           L+RRII+V  PS           L S R+ S SS+I   PKSA          NDE PVI
Sbjct: 3   LLRRIIVVSRPSSVFVHGFSESPLKSLRYSSTSSEIASSPKSASPDSNSVEPENDEKPVI 62

Query: 64  AFFKNHGFSKSQISKIVKKSPNLLSAKPEKTLLPKLLFLQSKGLSSPEIAKLVSSFPYIL 123
             F+NHGFSK+QIS++VKK P +LSA PEKTLLPKLLF QSKGLSSPEIAKLV  FP IL
Sbjct: 63  VLFENHGFSKTQISELVKKFPQVLSANPEKTLLPKLLFFQSKGLSSPEIAKLVCGFPSIL 122

Query: 124 NRSLNRHIIPSFDFLLDLLQSNENTLAAIKRFVGLLHVDLQSSVCPNIEILRQIGVPDSN 183
            RSL+R IIP+FD++ +LLQ+ E T+A+IKRF+G+L  DLQ    PN+E L QIGVPDS 
Sbjct: 123 MRSLDRKIIPAFDYIQELLQTEEKTIASIKRFLGILTWDLQIYARPNVETLIQIGVPDSK 182

Query: 184 IATILKFQPRMFSLKTIRFEKSVEEVKEMGFDPIRFGFVYAVSVLQSMSKSTWKKKVEVY 243
           IATIL++QPR+F + T+RF++ VEEVKEMGF+P+R  FV AV  +++MSKSTW+KKVEVY
Sbjct: 183 IATILEYQPRVFLVNTVRFKEIVEEVKEMGFNPLRLNFVLAVFAMRAMSKSTWRKKVEVY 242

Query: 244 GKWGWSEEEVVSAFGRHPGCMIASEDKINGVMDYFVNQIGYESSIIARNPTLVTLSLKSR 303
            KWGW EEE++SAF RHP CM+ASEDKINGVMD+FVN+IG E S IA+ P L++LSLK R
Sbjct: 243 KKWGWPEEEILSAFRRHPWCMMASEDKINGVMDFFVNKIGCEPSYIAKRPALISLSLKKR 302

Query: 304 IVPRGSVYQVLLSEGLIKKHAKFSFLFLSNEKKFLNSFIKPHEKSIPRLLKLYQKKLEVS 344
           IVPRGSVYQVLLS+GLIKK     FLF S E +FL+ FI PH++ IP LLKLY++KLE S
Sbjct: 303 IVPRGSVYQVLLSKGLIKKDVNLPFLFESAENRFLDKFIDPHKELIPGLLKLYKEKLEDS 362

[Close]

BLAST of Sed0012023 vs. ExPASy TrEMBL
Match: A0A6J1GWY1 (transcription termination factor MTERF4, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457902 PE=3 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 1.9e-115
Identity = 228/361 (63.16%), Postives = 274/361 (75.90%), Query Frame = 0


Query: 4   LIRRIILVKTPS-----------LISPRFLSRSSQIVLYPKSA----------NDETPVI 63
           L+RRII+V  PS           L S R+ S SS+I   PKSA          NDE PVI
Sbjct: 3   LLRRIIVVSRPSSVFVHGFSESPLKSLRYSSTSSEIASPPKSASPDSDSVKPENDEKPVI 62

Query: 64  AFFKNHGFSKSQISKIVKKSPNLLSAKPEKTLLPKLLFLQSKGLSSPEIAKLVSSFPYIL 123
            FF+NHGFSK+QIS +VKK P +LSA PEKTLLPKLLF QSKGLSSPEIAKLV SFP IL
Sbjct: 63  VFFENHGFSKTQISDLVKKFPQVLSANPEKTLLPKLLFFQSKGLSSPEIAKLVCSFPSIL 122

Query: 124 NRSLNRHIIPSFDFLLDLLQSNENTLAAIKRFVGLLHVDLQSSVCPNIEILRQIGVPDSN 183
            RSL+R IIP+FD++ +LLQ+ E T+A+IKRF+G+L  DLQ    PN+E L QIGVPDSN
Sbjct: 123 ARSLDRKIIPAFDYIQELLQTEEKTVASIKRFLGILTCDLQIHARPNVETLIQIGVPDSN 182

Query: 184 IATILKFQPRMFSLKTIRFEKSVEEVKEMGFDPIRFGFVYAVSVLQSMSKSTWKKKVEVY 243
           IATIL +QPR+F + T+RF++ VEEVKEMGF+P+R  FV AV  +++MSKSTW+KKVEVY
Sbjct: 183 IATILHYQPRVFLINTVRFKEIVEEVKEMGFNPLRLKFVLAVFAMRAMSKSTWRKKVEVY 242

Query: 244 GKWGWSEEEVVSAFGRHPGCMIASEDKINGVMDYFVNQIGYESSIIARNPTLVTLSLKSR 303
            KWGW EEE++SAF RHP CM+ASEDKINGVMD+FVN+IG E S IA+ P L++LSLK R
Sbjct: 243 KKWGWPEEEILSAFRRHPWCMMASEDKINGVMDFFVNKIGCEPSYIAKRPALISLSLKKR 302

Query: 304 IVPRGSVYQVLLSEGLIKKHAKFSFLFLSNEKKFLNSFIKPHEKSIPRLLKLYQKKLEVS 344
           IVPRGSVYQ LLS+GLIKK      LF S E +FL  FI PH++ IP LLKLY++KLE +
Sbjct: 303 IVPRGSVYQALLSKGLIKKDVNLPLLFDSTESRFLAKFIDPHKELIPELLKLYKEKLEDA 362

[Close]

BLAST of Sed0012023 vs. TAIR 10
Match: AT5G07900.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 221.5 bits (563), Expect = 1.1e-57
Identity = 124/320 (38.75%), Postives = 189/320 (59.06%), Query Frame = 0


Query: 17  ISPRFLSRSSQIVLYPKSANDETPVIAFFKNHGFSKSQISKIVKKSPNLLSAKPEKTLLP 76
           +SP   + +S+ +L        T V+   ++HGF+ +QIS +VKK P LL A  E  LLP
Sbjct: 81  LSPDSATVASRKLLLDSPERPNT-VLNLLRDHGFTTAQISSLVKKRPVLLLANAESVLLP 140

Query: 77  KLLFLQSKGLSSPEIAKLVSSFPYILNRSLNRHIIPSFDFLLDLLQSNENTLAAIKRFVG 136
           KL F  S G+S   +A+ ++S P IL RSL   +IPS++FL  +L S+E  +AA++R   
Sbjct: 141 KLSFFLSIGVSKSLLARTLASDPTILTRSLVNQLIPSYNFLKSVLDSDEKIVAALRRTTW 200

Query: 137 LLHVDLQSSVCPNIEILRQIGVPDSNIATILKFQPRMFSLKTIRFEKSVEEVKEMGFDPI 196
           +   D   ++ PNI  + + GVP+  I  +L   P     K   F+   ++ +EMGF+P 
Sbjct: 201 VFLEDHTKNLVPNINYMAETGVPEKCIKLLLTHFPEAVMQKNHEFQAIAKQAQEMGFNPQ 260

Query: 197 RFGFVYAVSVLQSM-SKSTWKKKVEVYGKWGWSEEEVVSAFGRHPGCMIASEDKINGVMD 256
           +  FV A+  L    +KS W K  EVY +WGWSE++++ AF +HP CM+ SE KIN  M+
Sbjct: 261 KSTFVLAIHALSGKGNKSIWDKCFEVYQRWGWSEDDIMCAFKKHPHCMMLSERKINRTME 320

Query: 257 YFVNQIGYESSIIARNPTLVTLSLKSRIVPRGSVYQVLLSEGLIKKHAKFSFLFLSNEKK 316
           YFVN++      IA+ P ++  SL+ RI+PR SV +VL+S GL+K+    + L +  EK 
Sbjct: 321 YFVNEMNMAPRSIAQCPVVLFFSLEKRIIPRCSVTKVLVSNGLVKEDWSLTSLLVPVEKV 380

Query: 317 FLNSFIKPHEKSIPRLLKLY 336
           FL   +  +E+ +P L+ LY
Sbjct: 381 FLEKLVIKYEEELPELMNLY 399

[Close]

BLAST of Sed0012023 vs. TAIR 10
Match: AT1G21150.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 199.9 bits (507), Expect = 3.3e-51
Identity = 108/320 (33.75%), Postives = 186/320 (58.13%), Query Frame = 0


Query: 15  SLISPRFLSRSSQIVLYPKSANDETPVIAFFKNHGFSKSQISKIVKKSPNLLSAKPEKTL 74
           SL S +  SR  ++V    S+     V+A FK+HGF+  QI+ ++K  P +LS  PE  +
Sbjct: 69  SLESAKSNSRFVKLV----SSKKPDSVLALFKDHGFTNDQITSVIKSFPRVLSLSPEDVI 128

Query: 75  LPKLLFLQSKGLSSPEIAKLVSSFPYILNRSLNRHIIPSFDFLLDLLQSNENTLAAIKRF 134
            PKL+F  S G S+ + AK++SS P +L+ SL++ +IP +D L  +L   E+ +  +KR 
Sbjct: 129 SPKLMFFSSIGFSTSDTAKMISSSPKMLSYSLHKRLIPCYDSLKSILVEEESVVKCLKRG 188

Query: 135 VGLLHVDLQSSVCPNIEILRQIGVPDSNIATILKFQPRMFSLKTIRFEKSVEEVKEMGFD 194
           +    + +   V   + I R++GVPD +I  +++  P  F  +  RF + +  V   GFD
Sbjct: 189 IRCFSLKITHCVSLRVSICRELGVPDKSIKWLVQASPFTFFSRERRFNEVLNRVCSYGFD 248

Query: 195 PIRFGFVYAVSVLQSMSKSTWKKKVEVYGKWGWSEEEVVSAFGRHPGCMIASEDKINGVM 254
           P + GFV+A+      S+S  ++K +++  +GWS+E+ V+A  R P C+  S++KI   +
Sbjct: 249 PKKAGFVHAMVAFDCTSESAMERKFKLFQCFGWSKEDFVAAIMRFPNCVTVSDEKIMYTL 308

Query: 255 DYFVNQIGYESSIIARNPTLVTLSLKSRIVPRGSVYQVLLSEGLIKKHAKFSFLFLS-NE 314
           +Y VN IG ++  I   P +++LS++ RI PR  V  +LLS+GL+KK     F  L    
Sbjct: 309 EYLVNNIGLQARDIVARPVVLSLSMEKRIKPRNQVISLLLSKGLVKKEDINYFTILKLKS 368

Query: 315 KKFLNSFIKPHEKSIPRLLK 334
            +F++ F+  ++  +P+L++
Sbjct: 369 SEFMDKFVLKYQDEMPQLVQ 384

[Close]

BLAST of Sed0012023 vs. TAIR 10
Match: AT5G64950.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 142.1 bits (357), Expect = 8.3e-34
Identity = 86/278 (30.94%), Postives = 146/278 (52.52%), Query Frame = 0


Query: 31  YP--KSANDETPVIAFFKNHGFSKSQISKIVKKSPNLLSAKPEKTLLPKLLFLQSKGLSS 90
           YP  KS      VI   K++ FS +QI K ++  P ++    EK L PKL F +  G + 
Sbjct: 62  YPNLKSLEQPRSVIQMLKSYSFSDTQIQKSIRVHPRMMFYNVEKILEPKLRFFKDIGFTG 121

Query: 91  PEIAKLVSSFPYILNRSLNRHIIPSFDFLLDLLQSNENTLAAIKRFVG--LLHVDLQSSV 150
             + K VS    ++  SL + +IP+ + L  ++      L  I    G  LL  D    +
Sbjct: 122 SGLGKFVSQNSSVVGVSLVKKLIPTVEILKSIVAPKHEDLPVILSRCGWLLLSRDPNLFL 181

Query: 151 CPNIEILRQIGVPDSNIATILKFQPRMFSLKTIRFEKSVEEVKEMGFDPIRFGFVYAVSV 210
            PNI  L   G+  S +A++L+ QPR+F+L   +    V    ++GF       V+AV  
Sbjct: 182 LPNISYLETCGIVGSQLASLLRRQPRIFNLSEEKLRGYVSRALDLGFTLNSRMLVHAVIS 241

Query: 211 LQSMSKSTWKKKVEVYGKWGWSEEEVVSAFGRHPGCMIASEDKINGVMDYFVNQIGYESS 270
           L S+S+ T+ +KV+++   G+SE+E+     R PG +  SEDK+    ++++ ++G E  
Sbjct: 242 LSSLSEKTFDRKVKLFMANGFSEDEITDIIRRSPGLIRCSEDKLTLGFEFYLKRMGLERE 301

Query: 271 IIARNPTLVTLSLKSRIVPRGSVYQVLLSEGLIKKHAK 305
            +A+ P +++ +L+ R++PR  V Q+L  +GL+ K  K
Sbjct: 302 ALAKRPCVLSYNLEKRVIPRLKVLQILREKGLLLKEEK 339

[Close]

BLAST of Sed0012023 vs. TAIR 10
Match: AT1G61970.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 141.7 bits (356), Expect = 1.1e-33
Identity = 101/341 (29.62%), Postives = 176/341 (51.61%), Query Frame = 0


Query: 36  NDETPVIAFFKNHGFSKSQISKIVKKSPNLLSAKPEKTLLPKLLFLQSKGLSSPEIAKLV 95
           N+   V+    +HGF+ SQIS I++  P LL A  EK+L PKL FLQS+G SS EI ++V
Sbjct: 82  NNPDSVLNLLTSHGFTGSQISTIIRDYPQLLIADAEKSLGPKLQFLQSRGASSSEITEIV 141

Query: 96  SSFPYILNRSLNRHIIPSFDFLLDLL--QSNENTLAAIKRFVGLLHVDLQSSVCPNIEIL 155
           SS P IL +  ++ I   +DF+ D L  +S++N     K    L   +L++ +  N+ +L
Sbjct: 142 SSVPEILGKKGHKTISVYYDFIKDTLLEKSSKNE----KLCHSLPQGNLENKI-RNVSVL 201

Query: 156 RQIGVPDSNIATILKFQPRMFSLKTIRFEKSVEEVKEMGFDPIRFGFVYAVSVLQSMSKS 215
           R++G+P   + ++L    +    K  +FE+++++V EMGFDP    FV A+ V+  M++ 
Sbjct: 202 RELGMPHKLLFSLLISDSQPVCGKE-KFEETLKKVVEMGFDPTTSKFVEALQVIYKMNEK 261

Query: 216 TWKKKVEVY--------------GKW---------------------GWSEEEVVSAFGR 275
           T ++KV +Y               KW                     G+S +E       
Sbjct: 262 TIEEKVHLYKSLGFDVGDVWSSFKKWPISLRVSEKKMLDSIETFLGLGFSRDEFAKMVKH 321

Query: 276 HPGCMIASEDKINGVMDYFVNQIGYESSIIARNPTLVTLSLKSRIVPRGSVYQVLLSEGL 335
            P C+  S + +    ++ V ++ +    +  NP +   SL+ RIVPRG+V + L+S+GL
Sbjct: 322 FPPCIGLSTETVKKKTEFLVKKMNWPLKAVVSNPAVFGYSLEKRIVPRGNVIKALMSKGL 381

Query: 336 IKKH-AKFSFLFLSNEKKFLNSFIKPH--EKSIPRLLKLYQ 337
           ++      S + +  ++ FLN ++  H  ++ +  L+ +Y+
Sbjct: 382 MRNELPSISCVLMCTKQVFLNRYVANHVDKQLVTELMAIYR 416

[Close]

BLAST of Sed0012023 vs. TAIR 10
Match: AT1G61970.2 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 141.7 bits (356), Expect = 1.1e-33
Identity = 101/341 (29.62%), Postives = 176/341 (51.61%), Query Frame = 0


Query: 36  NDETPVIAFFKNHGFSKSQISKIVKKSPNLLSAKPEKTLLPKLLFLQSKGLSSPEIAKLV 95
           N+   V+    +HGF+ SQIS I++  P LL A  EK+L PKL FLQS+G SS EI ++V
Sbjct: 82  NNPDSVLNLLTSHGFTGSQISTIIRDYPQLLIADAEKSLGPKLQFLQSRGASSSEITEIV 141

Query: 96  SSFPYILNRSLNRHIIPSFDFLLDLL--QSNENTLAAIKRFVGLLHVDLQSSVCPNIEIL 155
           SS P IL +  ++ I   +DF+ D L  +S++N     K    L   +L++ +  N+ +L
Sbjct: 142 SSVPEILGKKGHKTISVYYDFIKDTLLEKSSKNE----KLCHSLPQGNLENKI-RNVSVL 201

Query: 156 RQIGVPDSNIATILKFQPRMFSLKTIRFEKSVEEVKEMGFDPIRFGFVYAVSVLQSMSKS 215
           R++G+P   + ++L    +    K  +FE+++++V EMGFDP    FV A+ V+  M++ 
Sbjct: 202 RELGMPHKLLFSLLISDSQPVCGKE-KFEETLKKVVEMGFDPTTSKFVEALQVIYKMNEK 261

Query: 216 TWKKKVEVY--------------GKW---------------------GWSEEEVVSAFGR 275
           T ++KV +Y               KW                     G+S +E       
Sbjct: 262 TIEEKVHLYKSLGFDVGDVWSSFKKWPISLRVSEKKMLDSIETFLGLGFSRDEFAKMVKH 321

Query: 276 HPGCMIASEDKINGVMDYFVNQIGYESSIIARNPTLVTLSLKSRIVPRGSVYQVLLSEGL 335
            P C+  S + +    ++ V ++ +    +  NP +   SL+ RIVPRG+V + L+S+GL
Sbjct: 322 FPPCIGLSTETVKKKTEFLVKKMNWPLKAVVSNPAVFGYSLEKRIVPRGNVIKALMSKGL 381

Query: 336 IKKH-AKFSFLFLSNEKKFLNSFIKPH--EKSIPRLLKLYQ 337
           ++      S + +  ++ FLN ++  H  ++ +  L+ +Y+
Sbjct: 382 MRNELPSISCVLMCTKQVFLNRYVANHVDKQLVTELMAIYR 416

The following BLAST results are available for this feature:

BLAST of Sed0012023 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022973791.1	8.1e-124	67.87	transcription termination factor MTERF5, chloroplastic-like [Cucurbita maxima]	[more]
XP_023521670.1	1.4e-120	65.93	transcription termination factor MTERF5, chloroplastic-like [Cucurbita pepo subs...	[more]
XP_023539068.1	3.2e-120	65.65	transcription termination factor MTERF5, chloroplastic-like [Cucurbita pepo subs...	[more]
XP_022933339.1	4.7e-116	63.43	uncharacterized protein LOC111440613 isoform X2 [Cucurbita moschata]	[more]
XP_022933338.1	4.7e-116	63.43	uncharacterized protein LOC111440613 isoform X1 [Cucurbita moschata]	[more]

BLAST of Sed0012023 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZL6	1.8e-09	22.00	Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidop...	[more]
Q9ZT96	9.0e-09	21.05	Transcription termination factor MTERF4, chloroplastic OS=Arabidopsis thaliana O...	[more]
B6TGN4	3.4e-08	22.10	Transcription termination factor MTERF4, chloroplastic OS=Zea mays OX=4577 GN=MT...	[more]
Q6AUK6	1.7e-07	20.30	Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. ja...	[more]
F4JVI3	2.2e-07	24.62	Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana O...	[more]

BLAST of Sed0012023 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I9L4	3.9e-124	67.87	transcription termination factor MTERF5, chloroplastic-like OS=Cucurbita maxima ...	[more]
A0A6J1EZH0	2.3e-116	63.43	uncharacterized protein LOC111440613 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1F4G8	2.3e-116	63.43	uncharacterized protein LOC111440613 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1GVP2	1.5e-115	63.16	uncharacterized protein LOC111457902 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1GWY1	1.9e-115	63.16	transcription termination factor MTERF4, chloroplastic-like isoform X1 OS=Cucurb...	[more]

BLAST of Sed0012023 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G07900.1	1.1e-57	38.75	Mitochondrial transcription termination factor family protein	[more]
AT1G21150.1	3.3e-51	33.75	Mitochondrial transcription termination factor family protein	[more]
AT5G64950.1	8.3e-34	30.94	Mitochondrial transcription termination factor family protein	[more]
AT1G61970.1	1.1e-33	29.62	Mitochondrial transcription termination factor family protein	[more]
AT1G61970.2	1.1e-33	29.62	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 128..159 e-value: 110.0 score: 11.4 coord: 198..228 e-value: 1400.0 score: 2.8 coord: 233..264 e-value: 24.0 score: 13.9 coord: 92..123 e-value: 0.085 score: 22.0 coord: 56..87 e-value: 1.3E-4 score: 31.3 coord: 265..299 e-value: 18.0 score: 14.3 coord: 164..194 e-value: 11.0 score: 15.0 coord: 19..51 e-value: 1100.0 score: 3.7
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 43..194 e-value: 1.3E-22 score: 80.1 coord: 209..314 e-value: 4.2E-14 score: 52.2
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 18..341
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 107..334 e-value: 2.8E-45 score: 156.5
None	No IPR available	PANTHER	PTHR13068:SF160	TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED	coord: 18..341

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0012023.1	Sed0012023.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003690	double-stranded DNA binding