Sed0011985 (gene) Chayote v1

Overview


Name	Sed0011985
Type	gene
Organism	Sechium edule (Chayote v1)
Description	calmodulin-like
Location	LG02: 3977277 .. 3978024 (-)
RNA-Seq Expression	Sed0011985
Synteny	Sed0011985

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAGCCTTAGTAAAACAATGCATCTCAATTCTCACCTTCAAGCTTCATTTGCCGAATATGAAGCAATTAAATTATTGATAAGGAAGAATGATAGAGACAAGGATGGTCTTTACATTCCCTCTTCTCAAGCTTCGGTTGAATTCGGCAAAGAAAGAACTCCGTCGAGAATTCCGAAAGCTAACAACGAAATTCTACCCAAACTTGGTTCGAATCCTCTCATAAAATTGAAAGATCAATTAGAGGGCAAGGCTAAAAACTCTTCAACAAGGGTTGTCTTAGAAAGAACATCTAATATGCCACTTAGCAGGGAGCAAATGAAGCAAATTTTCAAACAACATGATAGCAATAACGATGGTTTCTTGAACATATGGGAGATAACAAAAGTGTTTGCTTTTCTTGGCTCAATTATTCCATTCAACAAAGCTCATTATGGTTTGGCTCTTGCAGATGCCAATAAAGATGGTCTAATAAGCGAAGTTGAACTCGATCAACTAATCGATTATGCAAGTAAGGTCATGAAGAAGAAATAAATATTTGAAGAATACTCATGTACTTCATATCAGAATGTACGTACGTAGTCTATCATTTGAAACTAGTAAACAATAATTTAAAGATAAGTATCCATAAGTATGTTAAAAATTAATTATTTTTACAAGTATTTATATTGTATGTTTCTTTTTTAGAGTAATCTAGTAAGTGCAAAAATGTTGTTAGTATATAGTTTTGTAATTTGAATATTTTCCGAAT

mRNA sequence

GAAAGCCTTAGTAAAACAATGCATCTCAATTCTCACCTTCAAGCTTCATTTGCCGAATATGAAGCAATTAAATTATTGATAAGGAAGAATGATAGAGACAAGGATGGTCTTTACATTCCCTCTTCTCAAGCTTCGGTTGAATTCGGCAAAGAAAGAACTCCGTCGAGAATTCCGAAAGCTAACAACGAAATTCTACCCAAACTTGGTTCGAATCCTCTCATAAAATTGAAAGATCAATTAGAGGGCAAGGCTAAAAACTCTTCAACAAGGGTTGTCTTAGAAAGAACATCTAATATGCCACTTAGCAGGGAGCAAATGAAGCAAATTTTCAAACAACATGATAGCAATAACGATGGTTTCTTGAACATATGGGAGATAACAAAAGTGTTTGCTTTTCTTGGCTCAATTATTCCATTCAACAAAGCTCATTATGGTTTGGCTCTTGCAGATGCCAATAAAGATGGTCTAATAAGCGAAGTTGAACTCGATCAACTAATCGATTATGCAAGTAAGGTCATGAAGAAGAAATAAATATTTGAAGAATACTCATGTACTTCATATCAGAATGTACGTACGTAGTCTATCATTTGAAACTAGTAAACAATAATTTAAAGATAAGTATCCATAAGTATGTTAAAAATTAATTATTTTTACAAGTATTTATATTGTATGTTTCTTTTTTAGAGTAATCTAGTAAGTGCAAAAATGTTGTTAGTATATAGTTTTGTAATTTGAATATTTTCCGAAT

Coding sequence (CDS)

ATGCATCTCAATTCTCACCTTCAAGCTTCATTTGCCGAATATGAAGCAATTAAATTATTGATAAGGAAGAATGATAGAGACAAGGATGGTCTTTACATTCCCTCTTCTCAAGCTTCGGTTGAATTCGGCAAAGAAAGAACTCCGTCGAGAATTCCGAAAGCTAACAACGAAATTCTACCCAAACTTGGTTCGAATCCTCTCATAAAATTGAAAGATCAATTAGAGGGCAAGGCTAAAAACTCTTCAACAAGGGTTGTCTTAGAAAGAACATCTAATATGCCACTTAGCAGGGAGCAAATGAAGCAAATTTTCAAACAACATGATAGCAATAACGATGGTTTCTTGAACATATGGGAGATAACAAAAGTGTTTGCTTTTCTTGGCTCAATTATTCCATTCAACAAAGCTCATTATGGTTTGGCTCTTGCAGATGCCAATAAAGATGGTCTAATAAGCGAAGTTGAACTCGATCAACTAATCGATTATGCAAGTAAGGTCATGAAGAAGAAATAA

Protein sequence

MHLNSHLQASFAEYEAIKLLIRKNDRDKDGLYIPSSQASVEFGKERTPSRIPKANNEILPKLGSNPLIKLKDQLEGKAKNSSTRVVLERTSNMPLSREQMKQIFKQHDSNNDGFLNIWEITKVFAFLGSIIPFNKAHYGLALADANKDGLISEVELDQLIDYASKVMKKK

Homology

[Close]

BLAST of Sed0011985 vs. NCBI nr
Match: XP_038886759.1 (probable calcium-binding protein CML11 [Benincasa hispida])

HSP 1 Score: 158.7 bits (400), Expect = 4.5e-35
Identity = 92/176 (52.27%), Postives = 120/176 (68.18%), Query Frame = 0


Query: 5   SHLQASFAEYEAIKLLIRKNDRDKDGL--------YIPSSQASVEFGKER--TPSRIPKA 64
           S LQA +AE EA + LI+K DR+ DG+        ++  + +S +    R      IPK 
Sbjct: 4   SQLQA-WAENEANE-LIKKYDRNGDGVLAKEELQSFLHDTCSSTQLNNTRCVLSRMIPKT 63

Query: 65  NNEILPKLGSNPLIKLKDQLEGKAKNSSTRVVLERTSNMPLSREQMKQIFKQHDSNNDGF 124
           NN ++ KL SN  +  K QL  K +NSST+ +  + SN+P SREQ+K+IFK HDSN DGF
Sbjct: 64  NNNLVHKLSSNTHMNQKKQLRDKIQNSSTKALDRKQSNIPPSREQIKEIFKYHDSNKDGF 123

Query: 125 LNIWEITKVFAFLGSIIPFNKAHYGLALADANKDGLISEVELDQLIDYASKVMKKK 171
           LNI E+TK F  LGS+IPF KAHY +A ADA+KDGLISEVELD+LIDY +K++KKK
Sbjct: 124 LNIRELTKTFGSLGSVIPFYKAHYAMAYADADKDGLISEVELDELIDYTNKIIKKK 177

[Close]

BLAST of Sed0011985 vs. NCBI nr
Match: XP_022951742.1 (probable calcium-binding protein CML11 [Cucurbita moschata])

HSP 1 Score: 151.8 bits (382), Expect = 5.5e-33
Identity = 87/174 (50.00%), Postives = 120/174 (68.97%), Query Frame = 0


Query: 5   SHLQASFAEYEAIKLLIRKNDRDKDG--------LYIPSSQASVEFGKERTPSRIPKANN 64
           S LQA +AE +A + LI+K D++ DG        +++   + S +   +   S+IP+ N+
Sbjct: 4   SILQA-WAENKANE-LIKKYDKNGDGVLTKEELQVFLRDVRGSTQLNNQGFLSKIPRTND 63

Query: 65  EILPKLGSNPLIKLKDQLEGKAKNSSTRVVLERTSNMPLSREQMKQIFKQHDSNNDGFLN 124
           +   KL SNP    K Q++ KA  SST+V+ E+ SN+PLSREQ+K+IFK +DS+ DGFLN
Sbjct: 64  KGAHKLNSNPRTNPKIQVQSKATKSSTKVLSEKVSNVPLSREQIKKIFKYYDSDKDGFLN 123

Query: 125 IWEITKVFAFLGSIIPFNKAHYGLALADANKDGLISEVELDQLIDYASKVMKKK 171
           I E+TK F+FLGSI PF KA Y +  ADAN DGLISE EL++LIDYA K++KKK
Sbjct: 124 IREVTKAFSFLGSINPFYKAQYAMTFADANNDGLISEAELEKLIDYAYKIIKKK 175

[Close]

BLAST of Sed0011985 vs. NCBI nr
Match: XP_022951799.1 (probable calcium-binding protein CML11 [Cucurbita moschata])

HSP 1 Score: 151.8 bits (382), Expect = 5.5e-33
Identity = 84/169 (49.70%), Postives = 117/169 (69.23%), Query Frame = 0


Query: 10  SFAEYEAIKLLIRKNDRDKDG--------LYIPSSQASVEFGKERTPSRIPKANNEILPK 69
           ++AE EA +L+ +K DR+ DG        +++   + S +   +   S+IPK N++   +
Sbjct: 6   AWAENEANELM-KKYDRNGDGVLTKEELQVFLRDVRGSTQLNHQGFLSKIPKTNDKGAHQ 65

Query: 70  LGSNPLIKLKDQLEGKAKNSSTRVVLERTSNMPLSREQMKQIFKQHDSNNDGFLNIWEIT 129
           L SN     K Q++GK   SST+V+ E+ SN+PLSREQ+K+IFK +DS+ DGFLNI E+T
Sbjct: 66  LSSNAHTNQKIQVQGKVTKSSTKVLSEKISNVPLSREQIKKIFKYYDSDKDGFLNIREVT 125

Query: 130 KVFAFLGSIIPFNKAHYGLALADANKDGLISEVELDQLIDYASKVMKKK 171
           K F+FLGSI PF KA Y +  ADAN DGLISEVEL++LIDYA K++KKK
Sbjct: 126 KAFSFLGSINPFYKAQYAMTFADANNDGLISEVELEKLIDYACKIIKKK 173

[Close]

BLAST of Sed0011985 vs. NCBI nr
Match: XP_022951134.1 (uncharacterized protein LOC111454074 isoform X1 [Cucurbita moschata])

HSP 1 Score: 151.0 bits (380), Expect = 9.4e-33
Identity = 85/168 (50.60%), Postives = 113/168 (67.26%), Query Frame = 0


Query: 12  AEYEAIKLLIRKNDRDKDGL--------YIPSSQASVEFGKER-TPSRIPKANNEILPKL 71
           AE EA +L+ +K D + DG+        ++  ++ S +    +   S+IPKA+N +  K 
Sbjct: 10  AEDEANRLM-KKYDTNGDGMLTKEELQVFLHKARGSTQLNNNQGFVSKIPKASNNVAHKH 69

Query: 72  GSNPLIKLKDQLEGKAKNSSTRVVLERTSNMPLSREQMKQIFKQHDSNNDGFLNIWEITK 131
            SN  +K K Q++ K K SST+ +    S + LSREQMK+IFK HDSN DGFL+I E+TK
Sbjct: 70  SSNSHMKHKKQVQDKGKKSSTKFLDGEMSKLQLSREQMKEIFKNHDSNKDGFLDIKEVTK 129

Query: 132 VFAFLGSIIPFNKAHYGLALADANKDGLISEVELDQLIDYASKVMKKK 171
            F+FLGSI+PFNKAHY +A AD N DGLISE ELD+LIDYASK + KK
Sbjct: 130 AFSFLGSILPFNKAHYAMAYADTNHDGLISEFELDKLIDYASKFINKK 176

[Close]

BLAST of Sed0011985 vs. NCBI nr
Match: XP_023538534.1 (putative calmodulin-like protein 6 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 150.6 bits (379), Expect = 1.2e-32
Identity = 84/170 (49.41%), Postives = 114/170 (67.06%), Query Frame = 0


Query: 10  SFAEYEAIKLLIRKNDRDKDGL--------YIPSSQASVEFGKER-TPSRIPKANNEILP 69
           ++AE EA +L+ +K D + DG+        ++  ++ S +    +   S+IPKA+N ++ 
Sbjct: 8   TWAEDEANRLM-KKYDTNGDGMLTKEELQVFLHKARGSTQLNNNQGFVSKIPKASNNVVH 67

Query: 70  KLGSNPLIKLKDQLEGKAKNSSTRVVLERTSNMPLSREQMKQIFKQHDSNNDGFLNIWEI 129
           K  SN  +K K Q++ K K SST+ +    S + LSREQMK+IFK HDSN DGFL+I E+
Sbjct: 68  KHSSNSHMKHKKQVQDKGKKSSTKFLDGEMSKLQLSREQMKEIFKNHDSNKDGFLDIKEV 127

Query: 130 TKVFAFLGSIIPFNKAHYGLALADANKDGLISEVELDQLIDYASKVMKKK 171
           TK F FLGSI+PFNKAHY +  AD N DGLISE ELD+LIDYASK + KK
Sbjct: 128 TKAFGFLGSILPFNKAHYAMTYADTNHDGLISEFELDKLIDYASKFINKK 176

[Close]

BLAST of Sed0011985 vs. ExPASy TrEMBL
Match: A0A0A0KMQ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G067410 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 2.7e-33
Identity = 84/169 (49.70%), Postives = 118/169 (69.82%), Query Frame = 0


Query: 5   SHLQASFAEYEAIKLLIRKNDRDKDGLYIPS---SQASVEFGKERTPSRIPKANNEILPK 64
           S LQAS A YEA  +LI++ +++ D + + +    ++S + G   +  +I K ++ +  K
Sbjct: 4   SKLQASMAMYEA-SMLIKQYEKNGDAVKVKAFDDVRSSTQIGNRESVLKILKPSDGVAHK 63

Query: 65  LGSNPLIKLKDQLEGKAKNSSTRVVLERTSNMPLSREQMKQIFKQHDSNNDGFLNIWEIT 124
           L S   I+   +  GK K S TRV+  ++SNM LSRE++K+IF+ HD+NNDGFLN  E+T
Sbjct: 64  LRSEAHIQPTQRTGGKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGFLNRMELT 123

Query: 125 KVFAFLGSIIPFNKAHYGLALADANKDGLISEVELDQLIDYASKVMKKK 171
           K FAFLGS+ PF KA YG+  ADAN+DGLISE ELD+LIDYASK++KKK
Sbjct: 124 KAFAFLGSMFPFYKACYGMVYADANEDGLISEAELDKLIDYASKIIKKK 171

[Close]

BLAST of Sed0011985 vs. ExPASy TrEMBL
Match: A0A6J1GJT8 (probable calcium-binding protein CML11 OS=Cucurbita moschata OX=3662 GN=LOC111454533 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 2.7e-33
Identity = 84/169 (49.70%), Postives = 117/169 (69.23%), Query Frame = 0


Query: 10  SFAEYEAIKLLIRKNDRDKDG--------LYIPSSQASVEFGKERTPSRIPKANNEILPK 69
           ++AE EA +L+ +K DR+ DG        +++   + S +   +   S+IPK N++   +
Sbjct: 6   AWAENEANELM-KKYDRNGDGVLTKEELQVFLRDVRGSTQLNHQGFLSKIPKTNDKGAHQ 65

Query: 70  LGSNPLIKLKDQLEGKAKNSSTRVVLERTSNMPLSREQMKQIFKQHDSNNDGFLNIWEIT 129
           L SN     K Q++GK   SST+V+ E+ SN+PLSREQ+K+IFK +DS+ DGFLNI E+T
Sbjct: 66  LSSNAHTNQKIQVQGKVTKSSTKVLSEKISNVPLSREQIKKIFKYYDSDKDGFLNIREVT 125

Query: 130 KVFAFLGSIIPFNKAHYGLALADANKDGLISEVELDQLIDYASKVMKKK 171
           K F+FLGSI PF KA Y +  ADAN DGLISEVEL++LIDYA K++KKK
Sbjct: 126 KAFSFLGSINPFYKAQYAMTFADANNDGLISEVELEKLIDYACKIIKKK 173

[Close]

BLAST of Sed0011985 vs. ExPASy TrEMBL
Match: A0A6J1GII5 (probable calcium-binding protein CML11 OS=Cucurbita moschata OX=3662 GN=LOC111454483 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 2.7e-33
Identity = 87/174 (50.00%), Postives = 120/174 (68.97%), Query Frame = 0


Query: 5   SHLQASFAEYEAIKLLIRKNDRDKDG--------LYIPSSQASVEFGKERTPSRIPKANN 64
           S LQA +AE +A + LI+K D++ DG        +++   + S +   +   S+IP+ N+
Sbjct: 4   SILQA-WAENKANE-LIKKYDKNGDGVLTKEELQVFLRDVRGSTQLNNQGFLSKIPRTND 63

Query: 65  EILPKLGSNPLIKLKDQLEGKAKNSSTRVVLERTSNMPLSREQMKQIFKQHDSNNDGFLN 124
           +   KL SNP    K Q++ KA  SST+V+ E+ SN+PLSREQ+K+IFK +DS+ DGFLN
Sbjct: 64  KGAHKLNSNPRTNPKIQVQSKATKSSTKVLSEKVSNVPLSREQIKKIFKYYDSDKDGFLN 123

Query: 125 IWEITKVFAFLGSIIPFNKAHYGLALADANKDGLISEVELDQLIDYASKVMKKK 171
           I E+TK F+FLGSI PF KA Y +  ADAN DGLISE EL++LIDYA K++KKK
Sbjct: 124 IREVTKAFSFLGSINPFYKAQYAMTFADANNDGLISEAELEKLIDYAYKIIKKK 175

[Close]

BLAST of Sed0011985 vs. ExPASy TrEMBL
Match: A0A6J1GHU7 (uncharacterized protein LOC111454074 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111454074 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 4.5e-33
Identity = 85/168 (50.60%), Postives = 113/168 (67.26%), Query Frame = 0


Query: 12  AEYEAIKLLIRKNDRDKDGL--------YIPSSQASVEFGKER-TPSRIPKANNEILPKL 71
           AE EA +L+ +K D + DG+        ++  ++ S +    +   S+IPKA+N +  K 
Sbjct: 10  AEDEANRLM-KKYDTNGDGMLTKEELQVFLHKARGSTQLNNNQGFVSKIPKASNNVAHKH 69

Query: 72  GSNPLIKLKDQLEGKAKNSSTRVVLERTSNMPLSREQMKQIFKQHDSNNDGFLNIWEITK 131
            SN  +K K Q++ K K SST+ +    S + LSREQMK+IFK HDSN DGFL+I E+TK
Sbjct: 70  SSNSHMKHKKQVQDKGKKSSTKFLDGEMSKLQLSREQMKEIFKNHDSNKDGFLDIKEVTK 129

Query: 132 VFAFLGSIIPFNKAHYGLALADANKDGLISEVELDQLIDYASKVMKKK 171
            F+FLGSI+PFNKAHY +A AD N DGLISE ELD+LIDYASK + KK
Sbjct: 130 AFSFLGSILPFNKAHYAMAYADTNHDGLISEFELDKLIDYASKFINKK 176

[Close]

BLAST of Sed0011985 vs. ExPASy TrEMBL
Match: A0A6J1GIQ8 (probable calcium-binding protein CML11 OS=Cucurbita moschata OX=3662 GN=LOC111454532 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 5.9e-33
Identity = 87/174 (50.00%), Postives = 119/174 (68.39%), Query Frame = 0


Query: 5   SHLQASFAEYEAIKLLIRKNDRDKDG--------LYIPSSQASVEFGKERTPSRIPKANN 64
           S LQA +AE EA +L+ +K DR+ DG        +++   + S +   +R  S+IPK N+
Sbjct: 4   SILQA-WAENEANELM-KKYDRNGDGVLTKEELQVFLRDVRGSTQLNHQRFLSKIPKTND 63

Query: 65  EILPKLGSNPLIKLKDQLEGKAKNSSTRVVLERTSNMPLSREQMKQIFKQHDSNNDGFLN 124
           +   +L SN     K Q++G A  SST+V+ E+ SN+PLSREQ+K+IFK +DS+ DGFLN
Sbjct: 64  KGAHQLSSNAHTNPKIQVQGTATKSSTKVLSEKVSNVPLSREQIKKIFKYYDSDKDGFLN 123

Query: 125 IWEITKVFAFLGSIIPFNKAHYGLALADANKDGLISEVELDQLIDYASKVMKKK 171
             E+TK F+FLGSI PF KA Y +  ADAN DGLISE EL++LIDYA K++KKK
Sbjct: 124 TREVTKAFSFLGSINPFYKAQYAMTFADANNDGLISEAELEKLIDYACKIIKKK 175

The following BLAST results are available for this feature:

BLAST of Sed0011985 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886759.1	4.5e-35	52.27	probable calcium-binding protein CML11 [Benincasa hispida]	[more]
XP_022951742.1	5.5e-33	50.00	probable calcium-binding protein CML11 [Cucurbita moschata]	[more]
XP_022951799.1	5.5e-33	49.70	probable calcium-binding protein CML11 [Cucurbita moschata]	[more]
XP_022951134.1	9.4e-33	50.60	uncharacterized protein LOC111454074 isoform X1 [Cucurbita moschata]	[more]
XP_023538534.1	1.2e-32	49.41	putative calmodulin-like protein 6 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0011985 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0011985 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMQ1	2.7e-33	49.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G067410 PE=4 SV=1	[more]
A0A6J1GJT8	2.7e-33	49.70	probable calcium-binding protein CML11 OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A6J1GII5	2.7e-33	50.00	probable calcium-binding protein CML11 OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A6J1GHU7	4.5e-33	50.60	uncharacterized protein LOC111454074 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1GIQ8	5.9e-33	50.00	probable calcium-binding protein CML11 OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]

BLAST of Sed0011985 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.238.10		coord: 49..167 e-value: 4.0E-9 score: 38.6
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 108..120
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 144..156
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 95..130 score: 10.608049
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 91..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0011985.1	Sed0011985.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding