Sed0011920 (gene) Chayote v1

Overview


Name	Sed0011920
Type	gene
Organism	Sechium edule (Chayote v1)
Description	40S ribosomal protein SA
Location	LG10: 33613145 .. 33616437 (+)
RNA-Seq Expression	Sed0011920
Synteny	Sed0011920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTCAGTTGGTGAAGTGTTTGCAGTCGGCGAAGTGTCCGAATCTCCTTCCTTCTTCCTTCAATTCGTTGATTATCAGATTCAGCCATGGCGACGGGAGCTGCACCACCTCGCCATCTCTCCCAGAAAGAGGCCGACATTCAGATGATGTTGGCTGCCGAAGTTCATCTCGGCACCAAAAACTGCAATTTTCAAATGGAACGTTACGTTTTCAAGCGCCGTAATGATGGTATTTTTCAATCTACTTCCCCTTCCATCTTCTTTCTTTGGTTAGTCCAGGTTTTGTTCTTTTCGCCTTCATAATGGCCGTGTTATTGTTGTTCTTAAGTTTTTTTCGATGGGATTTCTTAGAATTAGATTTTGATGGTAATATCTTAGACTTGTTTGTGGTTCTCTGGTTAAGCTTGCGTTTGCTTGTTTTTGGATTTAAGTTTCAGTCTCTGGCTATTACTCTGTTTATCTCTTTAGATTTTAACTGTATTTTCTGATGATCTATCAATGAATATTCTTCAAATTATTCTTCAATGGGCTTTATATGTTTGGTGTGACTCGCAATTTTGATTGTATTTTGAGTTTTATTGCTGAATGTTGGTTTATTCGGTTTCAGAAATGAACAACAGTCATAGGTGTTAAACTGAAATAACTTATAGGCCTCGATTGATAACCATTTGGTTTTTGAAATTTGAACCTACAACTACTACTCTAACATATGCTTTTCATTATTTTGATATCTACATTTTACTTGTGATTTTAAAAACCAAGTCAAAATTTGAAATCTGAAAGAAATAGCTTCCAAATTCTTTTTTTTGGTGTATGGAATTTGGCTGGGATACACATACTTCCTTAAGGGAAGATGAAACTATACTTAAAAGAATTTTAGTAAATACAAGCTTTAATTTCAAAAACTAAATAAAACCAAATAGTATAAAATGGTTCTAAACTTCTAGAGCCTCAGCAATTTTGATTTTGATATTTGTAAAGCTAGATGAGGATTATGTCTGCTATATGAATATGGAATTGCTGCACTATTATTGCTCTTTTTTTTTTCTTGAATCCTCTTTTATGTTTTCAGGAATTTACATCATTAACCTCGGTAAAACATGGGAAAAACTTCAGATGGCTGCTAGAGTTATTGTGTCTATTGAGAATCCTCAAGATATCATTGTTCAGTCTGCTAGGCCTTATGGTCAGAGAGCTGTTTTGAAGTTTGCTCAACACACCGGTGCTCATGCAATTGCTGGAAGGCACACTCCCGGAACATTTACCAATCAGCTTCAGACCTCATTCAATGAGCCACGCCTCCTTATACTCACTGATCCTAGAACCGATCATCAGGTATCTGACCTGACAAATCAACAATAGTTCATGTTTTAAGTTTAAGTCCAAGAAAAATGCAATTGTATTTCATTGTCAATCATGATTCAATTCATGCTTTTGTTCCCTTGGATTTATTTTCCTTTGGATTCACTTGATGCTCTTGTTTGTTAATGTTGTCTATGTCTTGTCTTGTTGATTTTGAGTGCAGCCAATCAAGGAAGCTGCCCTTGGTAACATTCCTACAATAGCCTTCTGTGACACCGATTCCCCAATGCGTTTTGTTGATATTGGAATCCCTGCTAACAACAAGGGTAAACATAGCATTGGGTGTCTGTTCTGGCTTTTGGCAAGGATGGTTCTACAAATGCGTGGAACAATTCGTGCTGGGTACAAATGGGACGTGATGGTAAATTCTAAATTCTGTGTCCTATTTGGACTGTGGAAACTACATCTTGACTGAGAAGTTTTAATTTTAACGATCTTTCATGGGAGCTTGTTTCTTTGTGTAGGTGGATTTGTTTTTCTATCGCGAGCCTGAGGAGACCAAGGAGAAAGACGAAGATGAGGCCCTTCCGCCCCCTGATTTTGGCATTGCTGACTATGGTGCCTCTGCACTTGGTGCTTCAGATCAATGGACTGCACAAATTGCTGATGCTCAGTGGGGTGGTGCTGCTGCAGATGCTGCTGCTCCTCCACCAGCTTCCGCTGTCGGGTGGACACAAGAGCCAGGTTGGACCTGAGATTTTCCCTTCAATTGTTTATTTGCTCTTCCCTTTGGTGTGGTTAATGGTTATGCAATGCAGACTAGCTTTGGTCTCTTGTCTCTTTGAAGAACTTTTCCCATTTAAACTAGACTGAGTTATTTCGTTTGCTTTCCATGCAAAGTTCTACCCTATTTTTTGCCATCACAGTAATTTGCACCTTAGACATCAGACATTAAGAGACCAAAAGGTTGCAGGTACGATTTATAGTAGTCACCTATTTTGGAATTAATTTATTCCAAGTTTTCTTGACATCCAAATATTGGTTAGATAATATGTCTTGTGGAGACAGTAGTGGCGTGCAAAGCTGGTCCAGACATTTATGGATATTTAAATAATAAATATTACATCGTAGACATTGTTGACCAGAAGTTGTTAGAACTTAAACCCAACTATCTAGCTGGTGTCTATCTGACGTGAAAAAAAGGAAGTGGAATGTAAAAGTGTGGAGTTGGAAGACTTTTTGGATGTAAGATTCTAATGCTTAGAGATAGATAGGTTATGTTTTCAATTTATGGTGAAAACATACGTGAGAATTAATTTTTTATGAGTTTCAATTGCCAACTAAATGTAGTAATGTCGGGAAATTGTTTTGTGATAGTAGTTTGGGTGTGCATGTAAGTTGATTAGAACACTTGCGGCCTTCGAATAAAAGATTTACTGCTTAAGACTTTTTTCGGTAGTCTTATAGATGGTTTTAAGTACTTTGCAATTGATAGTATGCTTTGGCTCAAATACTTCATTTTGTTCAACTACTTAAACTCAACATACATTCACTTATCACTTCCTTGTTTTATGTTACAGTTGGTTTGGCAGCAGATGAATGGGATACTGCAGTAGCGCCTCCGCCACCAGCGCCTGCCGTTGATGGCGCAGCACCTCCCTCCGATGGTGCAGCATCTCCCTCCGATGGTGCAGCACCTCCCTCCGATGGTGCAGCACCTCCCTCCACGGGTGATTGGTTTTGAGAAATATGTGGTTCCTACCTAAATGTAGTACTCAAATGGATTTATTATTACGAGTTTGTTTATTTAGAAATGTATCGTCCTTTATGGTTGGAAAGTCGACTCAATTTTGTTTCATACTCAGGTTCGAGATTTTAAGATTAAAATTTCAACTTTAATACATTTTGAGTGTCTTATGCCTTATGCCTTACCATGTACTATTAATAATGAGTTTTATTATTGTTATTGGGGAAAAAAAATCTAAATTTAC

mRNA sequence

CTTTTCAGTTGGTGAAGTGTTTGCAGTCGGCGAAGTGTCCGAATCTCCTTCCTTCTTCCTTCAATTCGTTGATTATCAGATTCAGCCATGGCGACGGGAGCTGCACCACCTCGCCATCTCTCCCAGAAAGAGGCCGACATTCAGATGATGTTGGCTGCCGAAGTTCATCTCGGCACCAAAAACTGCAATTTTCAAATGGAACGTTACGTTTTCAAGCGCCGTAATGATGGAATTTACATCATTAACCTCGGTAAAACATGGGAAAAACTTCAGATGGCTGCTAGAGTTATTGTGTCTATTGAGAATCCTCAAGATATCATTGTTCAGTCTGCTAGGCCTTATGGTCAGAGAGCTGTTTTGAAGTTTGCTCAACACACCGGTGCTCATGCAATTGCTGGAAGGCACACTCCCGGAACATTTACCAATCAGCTTCAGACCTCATTCAATGAGCCACGCCTCCTTATACTCACTGATCCTAGAACCGATCATCAGCCAATCAAGGAAGCTGCCCTTGGTAACATTCCTACAATAGCCTTCTGTGACACCGATTCCCCAATGCGTTTTGTTGATATTGGAATCCCTGCTAACAACAAGGGTAAACATAGCATTGGGTGTCTGTTCTGGCTTTTGGCAAGGATGGTTCTACAAATGCGTGGAACAATTCGTGCTGGGTACAAATGGGACGTGATGGTGGATTTGTTTTTCTATCGCGAGCCTGAGGAGACCAAGGAGAAAGACGAAGATGAGGCCCTTCCGCCCCCTGATTTTGGCATTGCTGACTATGGTGCCTCTGCACTTGGTGCTTCAGATCAATGGACTGCACAAATTGCTGATGCTCAGTGGGGTGGTGCTGCTGCAGATGCTGCTGCTCCTCCACCAGCTTCCGCTGTCGGGTGGACACAAGAGCCAGTTGGTTTGGCAGCAGATGAATGGGATACTGCAGTAGCGCCTCCGCCACCAGCGCCTGCCGTTGATGGCGCAGCACCTCCCTCCGATGGTGCAGCATCTCCCTCCGATGGTGCAGCACCTCCCTCCGATGGTGCAGCACCTCCCTCCACGGGTGATTGGTTTTGAGAAATATGTGGTTCCTACCTAAATGTAGTACTCAAATGGATTTATTATTACGAGTTTGTTTATTTAGAAATGTATCGTCCTTTATGGTTGGAAAGTCGACTCAATTTTGTTTCATACTCAGGTTCGAGATTTTAAGATTAAAATTTCAACTTTAATACATTTTGAGTGTCTTATGCCTTATGCCTTACCATGTACTATTAATAATGAGTTTTATTATTGTTATTGGGGAAAAAAAATCTAAATTTAC

Coding sequence (CDS)

ATGGCGACGGGAGCTGCACCACCTCGCCATCTCTCCCAGAAAGAGGCCGACATTCAGATGATGTTGGCTGCCGAAGTTCATCTCGGCACCAAAAACTGCAATTTTCAAATGGAACGTTACGTTTTCAAGCGCCGTAATGATGGAATTTACATCATTAACCTCGGTAAAACATGGGAAAAACTTCAGATGGCTGCTAGAGTTATTGTGTCTATTGAGAATCCTCAAGATATCATTGTTCAGTCTGCTAGGCCTTATGGTCAGAGAGCTGTTTTGAAGTTTGCTCAACACACCGGTGCTCATGCAATTGCTGGAAGGCACACTCCCGGAACATTTACCAATCAGCTTCAGACCTCATTCAATGAGCCACGCCTCCTTATACTCACTGATCCTAGAACCGATCATCAGCCAATCAAGGAAGCTGCCCTTGGTAACATTCCTACAATAGCCTTCTGTGACACCGATTCCCCAATGCGTTTTGTTGATATTGGAATCCCTGCTAACAACAAGGGTAAACATAGCATTGGGTGTCTGTTCTGGCTTTTGGCAAGGATGGTTCTACAAATGCGTGGAACAATTCGTGCTGGGTACAAATGGGACGTGATGGTGGATTTGTTTTTCTATCGCGAGCCTGAGGAGACCAAGGAGAAAGACGAAGATGAGGCCCTTCCGCCCCCTGATTTTGGCATTGCTGACTATGGTGCCTCTGCACTTGGTGCTTCAGATCAATGGACTGCACAAATTGCTGATGCTCAGTGGGGTGGTGCTGCTGCAGATGCTGCTGCTCCTCCACCAGCTTCCGCTGTCGGGTGGACACAAGAGCCAGTTGGTTTGGCAGCAGATGAATGGGATACTGCAGTAGCGCCTCCGCCACCAGCGCCTGCCGTTGATGGCGCAGCACCTCCCTCCGATGGTGCAGCATCTCCCTCCGATGGTGCAGCACCTCCCTCCGATGGTGCAGCACCTCCCTCCACGGGTGATTGGTTTTGA

Protein sequence

MATGAAPPRHLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVSIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRAGYKWDVMVDLFFYREPEETKEKDEDEALPPPDFGIADYGASALGASDQWTAQIADAQWGGAAADAAAPPPASAVGWTQEPVGLAADEWDTAVAPPPPAPAVDGAAPPSDGAASPSDGAAPPSDGAAPPSTGDWF

Homology

[Close]

BLAST of Sed0011920 vs. NCBI nr
Match: XP_022932088.1 (40S ribosomal protein SA-like [Cucurbita moschata] >KAG7037204.1 40S ribosomal protein SA [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 547.4 bits (1409), Expect = 8.7e-152
Identity = 275/309 (89.00%), Postives = 285/309 (92.23%), Query Frame = 0


Query: 1   MATGAAPPRHLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATGAAPPR LSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LQMAARVIVSIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120
           LQ+AARVIV IENPQDIIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMR+VDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGYKWDVMVDLFFYREPEETKEKDEDEALPPPDFGIADYGASALGAS 240
           LARMVLQMRGTIRAG+KWDVMVDLFFYREPEE KEK+E+EALPPPDFGIADYGA+ L AS
Sbjct: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240

Query: 241 DQWTAQIADAQWGGA-----AADAAAPPPASAVGWTQEPVGLAADEWDTAVAPPPPAPAV 300
           DQW+AQI DAQWG A     AA AAA PP S+V WT EP  LAAD WD AVAPP  APAV
Sbjct: 241 DQWSAQIPDAQWGAADVVVPAAAAAAIPPPSSVEWTSEPAALAADGWDAAVAPPLSAPAV 300

Query: 301 DGAAPPSDG 305
           DGAAPPS+G
Sbjct: 301 DGAAPPSNG 309

[Close]

BLAST of Sed0011920 vs. NCBI nr
Match: KAG6607580.1 (40S ribosomal protein SA, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 547.0 bits (1408), Expect = 1.1e-151
Identity = 275/310 (88.71%), Postives = 285/310 (91.94%), Query Frame = 0


Query: 1   MATGAAPPRHLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATGAAPPR LSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LQMAARVIVSIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120
           LQ+AARVIV IENPQDIIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMR+VDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGYKWDVMVDLFFYREPEETKEKDEDEALPPPDFGIADYGASALGAS 240
           LARMVLQMRGTIRAG+KWDVMVDLFFYREPEE KEK+E+EALPPPDFGIADYGA+ L AS
Sbjct: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240

Query: 241 DQWTAQIADAQWGG------AAADAAAPPPASAVGWTQEPVGLAADEWDTAVAPPPPAPA 300
           DQW+AQI DAQWG       AAA AAA PP S+V WT EP  LAAD WD AVAPP  APA
Sbjct: 241 DQWSAQIPDAQWGAADVVVPAAAAAAAIPPPSSVEWTSEPAALAADGWDAAVAPPLSAPA 300

Query: 301 VDGAAPPSDG 305
           VDGAAPPS+G
Sbjct: 301 VDGAAPPSNG 310

[Close]

BLAST of Sed0011920 vs. NCBI nr
Match: XP_023525392.1 (40S ribosomal protein SA-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 545.8 bits (1405), Expect = 2.5e-151
Identity = 275/313 (87.86%), Postives = 285/313 (91.05%), Query Frame = 0


Query: 1   MATGAAPPRHLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATGAAPPR LSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LQMAARVIVSIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120
           LQ+AARVIV IENPQDIIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMR+VDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGYKWDVMVDLFFYREPEETKEKDEDEALPPPDFGIADYGASALGAS 240
           LARMVLQMRGTIRAG+KWDVMVDLFFYREPEE KEK+E+EALPPPDFGIADYGA+ L AS
Sbjct: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240

Query: 241 DQWTAQIADAQWG---------GAAADAAAPPPASAVGWTQEPVGLAADEWDTAVAPPPP 300
           DQW+AQI DAQWG          AAA AAA PP S+V WT EP  LAAD WD AVAPP  
Sbjct: 241 DQWSAQIPDAQWGAADVVVPAAAAAAAAAAIPPPSSVEWTSEPAALAADGWDAAVAPPLS 300

Query: 301 APAVDGAAPPSDG 305
           APAVDGAAPPS+G
Sbjct: 301 APAVDGAAPPSNG 313

[Close]

BLAST of Sed0011920 vs. NCBI nr
Match: XP_022972886.1 (40S ribosomal protein SA-like [Cucurbita maxima])

HSP 1 Score: 544.7 bits (1402), Expect = 5.6e-151
Identity = 273/307 (88.93%), Postives = 283/307 (92.18%), Query Frame = 0


Query: 1   MATGAAPPRHLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATGAAPPR LSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LQMAARVIVSIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120
           LQ+AARVIV IENPQDIIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMR+VDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGYKWDVMVDLFFYREPEETKEKDEDEALPPPDFGIADYGASALGAS 240
           LARMVLQMRGTIRAG+KWDVMVDLFFYREPEE KEK+E+EALPPPDFGIADYGA+ L AS
Sbjct: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240

Query: 241 DQWTAQIADAQWGGA-----AADAAAPPPASAVGWTQEPVGLAADEWDTAVAPPPPAPAV 300
           DQW+AQI DAQWG A     AA AAA PP S+V WT EP  LAAD WD AV+PP  APAV
Sbjct: 241 DQWSAQIPDAQWGAADVVVPAATAAAIPPPSSVEWTSEPAALAADGWDAAVSPPLSAPAV 300

Query: 301 DGAAPPS 303
           DGAAPPS
Sbjct: 301 DGAAPPS 307

[Close]

BLAST of Sed0011920 vs. NCBI nr
Match: XP_038886558.1 (40S ribosomal protein SA-like [Benincasa hispida])

HSP 1 Score: 536.2 bits (1380), Expect = 2.0e-148
Identity = 275/329 (83.59%), Postives = 285/329 (86.63%), Query Frame = 0


Query: 1   MATGAAPPRHLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATGAAPPR L+QKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGAAPPRQLAQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LQMAARVIVSIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120
           LQ+AARVIV IENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMR+VDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGYKWDVMVDLFFYREPEETKEKDEDEALPPPDFGIADYGASALGAS 240
           LARMVLQMRGTIRAG+KWDVMVDLFFYREPEE KE +E+EALPPPDFGIADYGA+ L  +
Sbjct: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPPDFGIADYGAAPLVGA 240

Query: 241 DQWTAQIADAQWG-GAAADAAAPPPASAVGWTQEPVGLAADEWDTAVAPPPPAPAVDGAA 300
           DQWTAQI DAQWG G A  AAA PPAS V W QEPV LAAD WD AV   PP PA DGA 
Sbjct: 241 DQWTAQIPDAQWGAGDAVPAAAVPPASNVEWAQEPVALAADGWDAAV---PPVPAADGAV 300

Query: 301 PPSDGAASPSDGAAPPSDGAAPPSTGDWF 329
                       AAPP     PPS+  WF
Sbjct: 301 -----------AAAPP-----PPSSASWF 310

[Close]

BLAST of Sed0011920 vs. ExPASy Swiss-Prot
Match: A5BUU4 (40S ribosomal protein SA OS=Vitis vinifera OX=29760 GN=GSVIVT00034021001 PE=3 SV=1)

HSP 1 Score: 451.8 bits (1161), Expect = 6.5e-126
Identity = 236/308 (76.62%), Postives = 251/308 (81.49%), Query Frame = 0


Query: 5   AAPPRHLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQMA 64
           A P R LSQKE DIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQ+A
Sbjct: 2   ATPTRALSQKEQDIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQLA 61

Query: 65  ARVIVSIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNEPRL 124
           ARVIV+IENP+DIIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSF+EPRL
Sbjct: 62  ARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRL 121

Query: 125 LILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARM 184
           LILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMR+VDIGIPANNKGKHSIGCLFWLLARM
Sbjct: 122 LILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM 181

Query: 185 VLQMRGTIRAGYKWDVMVDLFFYREPEETKEKDEDEALPPPDFGIADYGASALG--ASDQ 244
           VLQMR TI  G+KWDVMVDLFFYREPEE KE++ DE +  PD+GI DY A+ALG      
Sbjct: 182 VLQMRRTIAPGHKWDVMVDLFFYREPEEPKEQEGDEVVAAPDYGITDYQATALGGLGGGD 241

Query: 245 WTAQIADAQWGGAAADAAAPPPA-SAVGW-----TQEPVGLAADEWDTAVAPP--PPAPA 303
           W A I DA   GA   A AP PA     W         V +A D WD A APP   P P 
Sbjct: 242 WGAPITDAPQWGADVPAVAPIPAVPGSNWGDAAPMPSAVPIATDGWDAAAAPPVAVPPPV 301

[Close]

BLAST of Sed0011920 vs. ExPASy Swiss-Prot
Match: O22518 (40S ribosomal protein SA OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 443.0 bits (1138), Expect = 3.0e-123
Identity = 227/298 (76.17%), Postives = 243/298 (81.54%), Query Frame = 0


Query: 5   AAPPRHLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQMA 64
           AAPPR LSQKEADIQMMLAA+VHLGTKNC+FQMERY+FKRRNDGIYIINLGKTWEKLQ+A
Sbjct: 9   AAPPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLA 68

Query: 65  ARVIVSIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNEPRL 124
           ARVIV+IENPQDIIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSF+EPRL
Sbjct: 69  ARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRL 128

Query: 125 LILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARM 184
           LILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMR+VDIGIPANNKGKHSIGCLFWLLARM
Sbjct: 129 LILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM 188

Query: 185 VLQMRGTIRAGYKWDVMVDLFFYREPEETKEKDEDEALPPPDFGIADYGASALGASDQWT 244
           VLQMRGTIR G KWDVMVDLFFYREPEE K+++E+EA P  D+ I D+ A A+ A  QW 
Sbjct: 189 VLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEEA-PAVDYAITDFNAGAIAADGQWP 248

Query: 245 AQIADAQWGGAAADAAAPPPASAVGWTQEPVGLAADEWDTAVAPPPPAPAVDGAAPPS 303
             I D  W  A        P    G   E    A  +W  AV PP   P      PPS
Sbjct: 249 GTI-DQSWSDAVPQPIPAVPGVNWGAPAEAPAAAGGDWGEAVPPPQQIP-----VPPS 299

[Close]

BLAST of Sed0011920 vs. ExPASy Swiss-Prot
Match: O80377 (40S ribosomal protein SA OS=Daucus carota OX=4039 GN=179B PE=2 SV=1)

HSP 1 Score: 441.4 bits (1134), Expect = 8.8e-123
Identity = 232/302 (76.82%), Postives = 254/302 (84.11%), Query Frame = 0


Query: 1   MATGAAPPRHLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MA+GA   R LS  EADIQMM AAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MASGA---RELSTMEADIQMMCAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LQMAARVIVSIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120
           L +AARVIVSIENPQDIIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSF+
Sbjct: 61  LMLAARVIVSIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFS 120

Query: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMR+VDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGYKWDVMVDLFFYREPEETKEKDEDEALPPPDFGIADYGASALGAS 240
           LARMVLQMRG I  G+KW+VMVDLFFYREPEETK+++E++ LP  D+ +ADY A+ +G +
Sbjct: 181 LARMVLQMRGVISQGHKWEVMVDLFFYREPEETKDQEEED-LPVGDY-VADYAAAPIGGA 240

Query: 241 DQWTAQIADAQWGGAAADAAAPPPASAVGWTQEPVG-LAADEWDTAVAPP-PPAPAVDGA 300
           DQW A I DAQWGG   D   P  ++    T    G +A D WD A APP P A  +D  
Sbjct: 241 DQWNA-IPDAQWGG---DVVQPANSAVPAGTWTDAGPIAGDGWDAAAAPPVPGAVGLDVP 293

[Close]

BLAST of Sed0011920 vs. ExPASy Swiss-Prot
Match: O65751 (40S ribosomal protein SA OS=Cicer arietinum OX=3827 GN=RAP40 PE=2 SV=1)

HSP 1 Score: 436.0 bits (1120), Expect = 3.7e-121
Identity = 226/304 (74.34%), Postives = 246/304 (80.92%), Query Frame = 0


Query: 1   MATGAAPPRHLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MAT  AP R L+QKEADIQMMLAA+VHLGTKNCNFQMERY+FKRRNDGIYIINLGKTW+K
Sbjct: 1   MATTTAPSRQLTQKEADIQMMLAADVHLGTKNCNFQMERYIFKRRNDGIYIINLGKTWDK 60

Query: 61  LQMAARVIVSIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120
           L +AAR+IV+IEN QDIIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSF+
Sbjct: 61  LNLAARIIVAIENSQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFS 120

Query: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPM +VDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMNYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGYKWDVMVDLFFYREPEETKEKDEDEALPPPDFGIADYGASALGAS 240
           LARMVLQMRGTIR G KWDVMVDLFFYREPEE K+ +EDE +  PD+ IAD+  SA+ + 
Sbjct: 181 LARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQPEEDE-VAAPDYAIADFNVSAIPSD 240

Query: 241 DQWTAQIADAQWGGAAADAAAPPPASAVGWTQEPVGLAADEWDTAVAPPPPAPAVDGAAP 300
            QW A I D  W  A       P   AV W   P  +A D W  AV PP   P     + 
Sbjct: 241 GQWPAAI-DQPWNDAVPQPI--PAVPAVNWA-APEAVAGD-WGEAVPPPQQIPTAGIESV 298

Query: 301 PSDG 305
           P+ G
Sbjct: 301 PATG 298

[Close]

BLAST of Sed0011920 vs. ExPASy Swiss-Prot
Match: Q08682 (40S ribosomal protein Sa-1 OS=Arabidopsis thaliana OX=3702 GN=RPSaA PE=1 SV=3)

HSP 1 Score: 434.5 bits (1116), Expect = 1.1e-120
Identity = 226/296 (76.35%), Postives = 243/296 (82.09%), Query Frame = 0


Query: 1   MAT-GAAPPRHLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWE 60
           MAT G+A    LSQKEAD++MM AAEVHLGTKNCN+QMERYVFKRRNDGIYI NLGKTWE
Sbjct: 1   MATNGSASSAQLSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWE 60

Query: 61  KLQMAARVIVSIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSF 120
           KLQMAARVIV+IENPQDIIVQSARPYGQRAVLKFAQ+TGA+AIAGRHTPGTFTNQ+QTSF
Sbjct: 61  KLQMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSF 120

Query: 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFW 180
           +EPRLLILTDPRTDHQPIKE ALGNIP IAFCDTDSPMRFVDIGIPANNKGKHSIGCLFW
Sbjct: 121 SEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFW 180

Query: 181 LLARMVLQMRGTIRAGYKWDVMVDLFFYREPEETKEKDEDEALPPPDFGIADYGASALGA 240
           LLARMVLQMRGTI AG KWDVMVDLFFYREPEETK +DEDEA P  ++G        +  
Sbjct: 181 LLARMVLQMRGTIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQAEYGALPAPEYGMVG 240

Query: 241 SDQW-TAQIADAQWGGAAADAAAPPPASAVGWTQEPVGLAADEWDTAVAPPPPAPA 295
            DQW TAQI DA W G      +  PA+A  W+      A   W+ A APP  APA
Sbjct: 241 GDQWTTAQIPDAAWPGEGQAPISAAPAAA-SWSDSAAAPADGGWE-AAAPPSGAPA 294

[Close]

BLAST of Sed0011920 vs. ExPASy TrEMBL
Match: A0A6J1F0N2 (40S ribosomal protein SA OS=Cucurbita moschata OX=3662 GN=LOC111438410 PE=3 SV=1)

HSP 1 Score: 547.4 bits (1409), Expect = 4.2e-152
Identity = 275/309 (89.00%), Postives = 285/309 (92.23%), Query Frame = 0


Query: 1   MATGAAPPRHLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATGAAPPR LSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LQMAARVIVSIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120
           LQ+AARVIV IENPQDIIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMR+VDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGYKWDVMVDLFFYREPEETKEKDEDEALPPPDFGIADYGASALGAS 240
           LARMVLQMRGTIRAG+KWDVMVDLFFYREPEE KEK+E+EALPPPDFGIADYGA+ L AS
Sbjct: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240

Query: 241 DQWTAQIADAQWGGA-----AADAAAPPPASAVGWTQEPVGLAADEWDTAVAPPPPAPAV 300
           DQW+AQI DAQWG A     AA AAA PP S+V WT EP  LAAD WD AVAPP  APAV
Sbjct: 241 DQWSAQIPDAQWGAADVVVPAAAAAAIPPPSSVEWTSEPAALAADGWDAAVAPPLSAPAV 300

Query: 301 DGAAPPSDG 305
           DGAAPPS+G
Sbjct: 301 DGAAPPSNG 309

[Close]

BLAST of Sed0011920 vs. ExPASy TrEMBL
Match: A0A6J1I769 (40S ribosomal protein SA OS=Cucurbita maxima OX=3661 GN=LOC111471398 PE=3 SV=1)

HSP 1 Score: 544.7 bits (1402), Expect = 2.7e-151
Identity = 273/307 (88.93%), Postives = 283/307 (92.18%), Query Frame = 0


Query: 1   MATGAAPPRHLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATGAAPPR LSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LQMAARVIVSIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120
           LQ+AARVIV IENPQDIIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMR+VDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGYKWDVMVDLFFYREPEETKEKDEDEALPPPDFGIADYGASALGAS 240
           LARMVLQMRGTIRAG+KWDVMVDLFFYREPEE KEK+E+EALPPPDFGIADYGA+ L AS
Sbjct: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240

Query: 241 DQWTAQIADAQWGGA-----AADAAAPPPASAVGWTQEPVGLAADEWDTAVAPPPPAPAV 300
           DQW+AQI DAQWG A     AA AAA PP S+V WT EP  LAAD WD AV+PP  APAV
Sbjct: 241 DQWSAQIPDAQWGAADVVVPAATAAAIPPPSSVEWTSEPAALAADGWDAAVSPPLSAPAV 300

Query: 301 DGAAPPS 303
           DGAAPPS
Sbjct: 301 DGAAPPS 307

[Close]

BLAST of Sed0011920 vs. ExPASy TrEMBL
Match: A0A6J1I7P9 (40S ribosomal protein SA OS=Cucurbita maxima OX=3661 GN=LOC111472042 PE=3 SV=1)

HSP 1 Score: 532.3 bits (1370), Expect = 1.4e-147
Identity = 268/304 (88.16%), Postives = 279/304 (91.78%), Query Frame = 0


Query: 1   MATGAAPPRHLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATGAAP R LSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGAAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LQMAARVIVSIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120
           L MAARVIV+IENPQDIIVQSARPYGQRAVLKFAQ+TG HAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LYMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMR+VDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGYKWDVMVDLFFYREPEETKEKDEDEALPPPDFGIADYGASALGAS 240
           LARMVLQMRGTIRAG+KWDVMVDLFFYREPEE KEK+E+EALPPPDFGIADYGA+ L AS
Sbjct: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240

Query: 241 DQWTAQIADAQWGGA-AADAAAPPPASAVGWTQEPVGLAADEWDTAVAPPPPA-PAVDGA 300
           DQW AQI+DAQWG A    A A P AS+V W  EPV LAA+EW+ AVAPPPPA PA DGA
Sbjct: 241 DQWAAQISDAQWGAADVVPAPAAPAASSVEWAPEPVPLAANEWEAAVAPPPPAPPAADGA 300

Query: 301 APPS 303
           AP S
Sbjct: 301 APSS 304

[Close]

BLAST of Sed0011920 vs. ExPASy TrEMBL
Match: A0A6J1EC15 (40S ribosomal protein SA OS=Cucurbita moschata OX=3662 GN=LOC111432696 PE=3 SV=1)

HSP 1 Score: 532.3 bits (1370), Expect = 1.4e-147
Identity = 268/304 (88.16%), Postives = 279/304 (91.78%), Query Frame = 0


Query: 1   MATGAAPPRHLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATGAAP R LSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGAAPARQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LQMAARVIVSIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120
           L MAARVIV+IENPQDIIVQSARPYGQRAVLKFAQ+TG HAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LYMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMR+VDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGYKWDVMVDLFFYREPEETKEKDEDEALPPPDFGIADYGASALGAS 240
           LARMVLQMRGTIRAG+KWDVMVDLFFYREPEE KEK+E+EALPPPDFGIADYGA+ L AS
Sbjct: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEEALPPPDFGIADYGAAPLVAS 240

Query: 241 DQWTAQIADAQWGGA-AADAAAPPPASAVGWTQEPVGLAADEWDTAVAPPPPA-PAVDGA 300
           DQW AQI+DAQWG A    A A P AS+V W  EPV LAA+EW+ AVAPPPPA PA DGA
Sbjct: 241 DQWAAQISDAQWGAADVVPAPAAPAASSVEWAPEPVPLAANEWEAAVAPPPPAPPAADGA 300

Query: 301 APPS 303
           AP S
Sbjct: 301 APSS 304

[Close]

BLAST of Sed0011920 vs. ExPASy TrEMBL
Match: A0A5D3DUK0 (40S ribosomal protein SA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00510 PE=3 SV=1)

HSP 1 Score: 525.0 bits (1351), Expect = 2.2e-145
Identity = 265/306 (86.60%), Postives = 274/306 (89.54%), Query Frame = 0


Query: 1   MATGAAPPRHLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MATGAAPPR LSQKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 1   MATGAAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60

Query: 61  LQMAARVIVSIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120
           LQ+AARVIV IENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN
Sbjct: 61  LQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120

Query: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMR+VDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGYKWDVMVDLFFYREPEETKEKDEDEALPPPDFGIADYGASALGAS 240
           LARMVLQMRGTIRAG+KWDVMVDLFFYREPEE KE +E+EALPP DFGIADY A+ L AS
Sbjct: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEPEEEEALPPADFGIADYSAAPL-AS 240

Query: 241 DQWTAQIADAQWGGAAADAAAPP----PASAVGWTQEPVGLAADEWDTAVAPPPPAPAVD 300
           DQWT+QI DAQWG  AADA  PP    PAS   W  EPV L AD WD A  PPPPA + D
Sbjct: 241 DQWTSQIPDAQWG--AADALPPPAAVVPASGAEWAPEPVALTADGWDAAAPPPPPAASAD 300

Query: 301 GAAPPS 303
           G AP S
Sbjct: 301 GTAPAS 303

[Close]

BLAST of Sed0011920 vs. TAIR 10
Match: AT1G72370.1 (40s ribosomal protein SA )

HSP 1 Score: 434.5 bits (1116), Expect = 7.6e-122
Identity = 226/296 (76.35%), Postives = 243/296 (82.09%), Query Frame = 0


Query: 1   MAT-GAAPPRHLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWE 60
           MAT G+A    LSQKEAD++MM AAEVHLGTKNCN+QMERYVFKRRNDGIYI NLGKTWE
Sbjct: 1   MATNGSASSAQLSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWE 60

Query: 61  KLQMAARVIVSIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSF 120
           KLQMAARVIV+IENPQDIIVQSARPYGQRAVLKFAQ+TGA+AIAGRHTPGTFTNQ+QTSF
Sbjct: 61  KLQMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSF 120

Query: 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFW 180
           +EPRLLILTDPRTDHQPIKE ALGNIP IAFCDTDSPMRFVDIGIPANNKGKHSIGCLFW
Sbjct: 121 SEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFW 180

Query: 181 LLARMVLQMRGTIRAGYKWDVMVDLFFYREPEETKEKDEDEALPPPDFGIADYGASALGA 240
           LLARMVLQMRGTI AG KWDVMVDLFFYREPEETK +DEDEA P  ++G        +  
Sbjct: 181 LLARMVLQMRGTIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQAEYGALPAPEYGMVG 240

Query: 241 SDQW-TAQIADAQWGGAAADAAAPPPASAVGWTQEPVGLAADEWDTAVAPPPPAPA 295
            DQW TAQI DA W G      +  PA+A  W+      A   W+ A APP  APA
Sbjct: 241 GDQWTTAQIPDAAWPGEGQAPISAAPAAA-SWSDSAAAPADGGWE-AAAPPSGAPA 294

[Close]

BLAST of Sed0011920 vs. TAIR 10
Match: AT1G72370.2 (40s ribosomal protein SA )

HSP 1 Score: 431.0 bits (1107), Expect = 8.4e-121
Identity = 226/296 (76.35%), Postives = 243/296 (82.09%), Query Frame = 0


Query: 1   MAT-GAAPPRHLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWE 60
           MAT G+A    LSQKEAD++MM AAEVHLGTKNCN+QMERYVFKRRNDGIYI NLGKTWE
Sbjct: 1   MATNGSASSAQLSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWE 60

Query: 61  KLQMAARVIVSIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSF 120
           KLQMAARVIV+IENPQDIIVQSARPYGQRAVLKFAQ+TGA+AIAGRHTPGTFTNQ+QTSF
Sbjct: 61  KLQMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSF 120

Query: 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFW 180
           +EPRLLILTDPRTDHQPIKE ALGNIP IAFCDTDSPMRFVDIGIPANNKGKHSIGCLFW
Sbjct: 121 SEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFW 180

Query: 181 LLARMVLQMRGTIRAGYKWDVMVDLFFYREPEETKEKDEDEALPPPDFGIADYGASALGA 240
           LLARMVLQMRGTI AG KWDVMVDLFFYREPEETK +DEDEA P  ++G        +  
Sbjct: 181 LLARMVLQMRGTIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQAEYGALPAPEYGMVG 240

Query: 241 SDQW-TAQIADAQWGGAAADAAAPPPASAVGWTQEPVGLAADEWDTAVAPPPPAPA 295
            DQW TAQI DA W G      +  PA+A  W+      +AD    A APP  APA
Sbjct: 241 GDQWTTAQIPDAAWPGEGQAPISAAPAAA-SWSD-----SADGGWEAAAPPSGAPA 290

[Close]

BLAST of Sed0011920 vs. TAIR 10
Match: AT3G04770.2 (40s ribosomal protein SA B )

HSP 1 Score: 411.0 bits (1055), Expect = 9.0e-115
Identity = 209/284 (73.59%), Postives = 232/284 (81.69%), Query Frame = 0


Query: 5   AAPPRHLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQMA 64
           A   R +S+KEADIQMML+A+VHLGTKNCN+QMERYVFKRR+DGIYIINLGKTW+KLQMA
Sbjct: 7   ATAGRQVSEKEADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMA 66

Query: 65  ARVIVSIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNEPRL 124
           ARVIV+IENP+DIIVQSARPYGQRAVLKFAQ+TG +AIAGRHTPGTFTNQ+QTSF+EPRL
Sbjct: 67  ARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRL 126

Query: 125 LILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARM 184
           LILTDPRTDHQPIKE ALGNIPTIAFCDTDSPM FVDIGIPANNKGKHSIGCLFWLLARM
Sbjct: 127 LILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARM 186

Query: 185 VLQMRGTIRAGYKWDVMVDLFFYREPEETKEKDEDEALPPPDFGIADYGASALGASDQW- 244
           VLQMRGTI A  KWDVMVDLFFYREPEE K++ ++EA    D+G+           DQW 
Sbjct: 187 VLQMRGTILAAQKWDVMVDLFFYREPEEAKQEGDEEAEVQADYGMV--------GGDQWT 246

Query: 245 TAQIADAQWGGAAADAAAPPPA----SAVGWTQEPVGLAADEWD 284
           TAQI+DA W G      +  PA     A GW  E   + A  W+
Sbjct: 247 TAQISDAAWSGEVEQPISAAPAVGVTVAAGW--EAASVPAAGWE 280

[Close]

BLAST of Sed0011920 vs. TAIR 10
Match: AT3G04770.1 (40s ribosomal protein SA B )

HSP 1 Score: 366.7 bits (940), Expect = 2.0e-101
Identity = 175/199 (87.94%), Postives = 189/199 (94.97%), Query Frame = 0


Query: 5   AAPPRHLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQMA 64
           A   R +S+KEADIQMML+A+VHLGTKNCN+QMERYVFKRR+DGIYIINLGKTW+KLQMA
Sbjct: 7   ATAGRQVSEKEADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMA 66

Query: 65  ARVIVSIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNEPRL 124
           ARVIV+IENP+DIIVQSARPYGQRAVLKFAQ+TG +AIAGRHTPGTFTNQ+QTSF+EPRL
Sbjct: 67  ARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRL 126

Query: 125 LILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARM 184
           LILTDPRTDHQPIKE ALGNIPTIAFCDTDSPM FVDIGIPANNKGKHSIGCLFWLLARM
Sbjct: 127 LILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARM 186

Query: 185 VLQMRGTIRAGYKWDVMVD 204
           VLQMRGTI A  KWDVMV+
Sbjct: 187 VLQMRGTILAAQKWDVMVN 205

The following BLAST results are available for this feature:

BLAST of Sed0011920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932088.1	8.7e-152	89.00	40S ribosomal protein SA-like [Cucurbita moschata] >KAG7037204.1 40S ribosomal p...	[more]
KAG6607580.1	1.1e-151	88.71	40S ribosomal protein SA, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023525392.1	2.5e-151	87.86	40S ribosomal protein SA-like [Cucurbita pepo subsp. pepo]	[more]
XP_022972886.1	5.6e-151	88.93	40S ribosomal protein SA-like [Cucurbita maxima]	[more]
XP_038886558.1	2.0e-148	83.59	40S ribosomal protein SA-like [Benincasa hispida]	[more]

BLAST of Sed0011920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A5BUU4	6.5e-126	76.62	40S ribosomal protein SA OS=Vitis vinifera OX=29760 GN=GSVIVT00034021001 PE=3 SV...	[more]
O22518	3.0e-123	76.17	40S ribosomal protein SA OS=Glycine max OX=3847 PE=2 SV=1	[more]
O80377	8.8e-123	76.82	40S ribosomal protein SA OS=Daucus carota OX=4039 GN=179B PE=2 SV=1	[more]
O65751	3.7e-121	74.34	40S ribosomal protein SA OS=Cicer arietinum OX=3827 GN=RAP40 PE=2 SV=1	[more]
Q08682	1.1e-120	76.35	40S ribosomal protein Sa-1 OS=Arabidopsis thaliana OX=3702 GN=RPSaA PE=1 SV=3	[more]

BLAST of Sed0011920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F0N2	4.2e-152	89.00	40S ribosomal protein SA OS=Cucurbita moschata OX=3662 GN=LOC111438410 PE=3 SV=1	[more]
A0A6J1I769	2.7e-151	88.93	40S ribosomal protein SA OS=Cucurbita maxima OX=3661 GN=LOC111471398 PE=3 SV=1	[more]
A0A6J1I7P9	1.4e-147	88.16	40S ribosomal protein SA OS=Cucurbita maxima OX=3661 GN=LOC111472042 PE=3 SV=1	[more]
A0A6J1EC15	1.4e-147	88.16	40S ribosomal protein SA OS=Cucurbita moschata OX=3662 GN=LOC111432696 PE=3 SV=1	[more]
A0A5D3DUK0	2.2e-145	86.60	40S ribosomal protein SA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of Sed0011920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G72370.1	7.6e-122	76.35	40s ribosomal protein SA	[more]
AT1G72370.2	8.4e-121	76.35	40s ribosomal protein SA	[more]
AT3G04770.2	9.0e-115	73.59	40s ribosomal protein SA B	[more]
AT3G04770.1	2.0e-101	87.94	40s ribosomal protein SA B	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001865	Ribosomal protein S2	PRINTS	PR00395	RIBOSOMALS2	coord: 48..57 score: 64.92 coord: 160..174 score: 53.64 coord: 18..36 score: 35.79 coord: 139..150 score: 51.15 coord: 122..139 score: 44.62 coord: 97..114 score: 47.01
IPR001865	Ribosomal protein S2	PFAM	PF00318	Ribosomal_S2	coord: 21..114 e-value: 2.7E-14 score: 52.9 coord: 120..185 e-value: 3.2E-12 score: 46.2
IPR001865	Ribosomal protein S2	CDD	cd01425	RPS2	coord: 21..187 e-value: 4.15372E-74 score: 223.228
None	No IPR available	GENE3D	3.40.50.10490		coord: 17..222 e-value: 3.8E-103 score: 345.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 254..277
None	No IPR available	PANTHER	PTHR11489:SF25	40S RIBOSOMAL PROTEIN SA	coord: 5..270
IPR005707	Ribosomal protein S2, eukaryotic/archaeal	TIGRFAM	TIGR01012	TIGR01012	coord: 13..209 e-value: 4.0E-96 score: 318.1
IPR005707	Ribosomal protein S2, eukaryotic/archaeal	PANTHER	PTHR11489	40S RIBOSOMAL PROTEIN SA	coord: 5..270
IPR018130	Ribosomal protein S2, conserved site	PROSITE	PS00963	RIBOSOMAL_S2_2	coord: 122..146
IPR018130	Ribosomal protein S2, conserved site	PROSITE	PS00962	RIBOSOMAL_S2_1	coord: 18..29
IPR027498	Ribosomal protein S2, eukaryotic	HAMAP	MF_03015	Ribosomal_S2_euk	coord: 5..246 score: 50.105877
IPR023591	Ribosomal protein S2, flavodoxin-like domain superfamily	SUPERFAMILY	52313	Ribosomal protein S2	coord: 13..203

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0011920.1	Sed0011920.1	mRNA
Sed0011920.2	Sed0011920.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome