Sed0011876 (gene) Chayote v1

Overview
NameSed0011876
Typegene
OrganismSechium edule (Chayote v1)
Descriptionserine/arginine-rich splicing factor 11
LocationLG04: 47701885 .. 47705119 (-)
RNA-Seq ExpressionSed0011876
SyntenySed0011876
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCCTCGTCTTCATCGGCGACTTCCGATTCTTCTTCTTCTTCCTCTCGCCGTCGCCAACGCCGTAGAACTCGCCGTGAAAAAGATCGGGACACCCTTAGGATTCGAAAGAAGTCTCGCTCTCATTCTAAACGCCGCCGCAGGCACCGCCGCTCCTCCTCAGATTCTCTATCTTCATCAGAATCCGATGACTCTCGGTAACCTTATTAACTTCAATACTTTTTCTCTTATCATGCTTTTCCCTGGTTTTTGTGACCTTAGTTGATTTTTGGTTGCTGCTGATTACAGTTCGATACAGATAGGGAGATTTTGTTTTTCTGAGTTTCTATGCGATATCTGATACTCTTTGGGCAACTTTATTGTGCCTTTTCTGATTTTTATCTTTTTTGGTTTTCCCGATTTCTTACTGGAAGTTATGTAATTATGCACTCTTAGTTATGATTAGGGTTTAAACGAGAATTGGTTGGCATTTGGAAAGATAACTCGTGAGCTCCTGGGTTCAGAAAACTAAGAATTAGAATTTAGGTTATTCTGCCTACTGGCGGTCTACTGGGCGGCCTGATTTCACTGTTATAAAAAAAATTTGCAGGGGTCATCTTAACTTTCTACTATTTAGAAAAGGAAAACAAAAATGTGTTCACATCTTGTTCCTATGTTAGATTTAAAATCTTTTGTATGCAAGTCCCGGGTGGTTCTGTTTCTCATTGAAACTTAATCGATGTAATGGCTGGACTTTGGTGGATGCACATCATATATATGCTGGTTTCCTAATTTATACTGCTCGTTTCCCAGTCAATTATTTTTGCATAGCACATGTCATGTAACCAAGATAATTCTTAGCTTACTATTCCTCGTATATACATGTAGAAGCGACAGCTCTTCTCAAAGTGAGCCTGAAACATCTGGTCGTTCTAAGCGGCATAAGAAGGATGATAGAACAAAGAAGGTATAAGTTTTGATACACCAACTATTCTCCGTGCCTTTGTAGCTACACCTGTGGATTTTCACCTTGTTATTGTTACTCTTTATCCGTGCATCTTAGGATAAGGAGAGGGAGCGAAGTAAGAGTCGTCACCATAAAAGGCGCAAGCAGAAAGCTAAAGAGGTAGATCACTTGCCTGTTTGTGTAATTTCTCCCTTTGTTTCTGTTCATGCTGTACGTTCAATGAACTACCTGTATCTGCATTGCGTTTACCTTTTCCCACCTCTTTTGTATCGTGACTTTTACCTGTATCTACATCCTCTTGACATATTTTCTCAGAACATATTAGTAACAAAGTAGGTGTAACTTTTAACACATATCCAATGTTTTAGATTTGTTATGAAGAGGTGAGAGGTAAGCTTCAAGATAGTATTATACATAAACCTCAACTTAAATTAAAATATTAGTGAACATAATAAGATTTTAAGAAACAATTAAGTTTCCATCTGTTATCTTTCTTATATTTGTGGTCCTGGGTGGTTAAAGTAGCAACGGCTGAATTATCATTACTCAACAGTGTAAAGAATAAGCATAAACTATTGTTGTTGGCTTTTGGTAAAAAATTTCATACATGTTTCCTATACTAAAAACGGAGCATTAAGGATCTTTGTTAACAAAGGCATTAAGGCTCCAAGCATCTGTGTGTTCAAATAGAGGCCCAACGCAACCCTTAGTTAAAAAAGGTGCAATTCTCATATATGCGAGGCCTAACCGTAACCACTTATAATCTAAAGTGGGCATAAGCTTTGAGTTGAGGCAAAATATTTGAGCCTCCCTAAGAAGACAAGCATGCAATCTTTGGACTAAAGCTGAAAGTAATGATCTATTTTCCGAGTTATCTTTTTTTAGTCATGCAATTTTCATACTACACCTATGATTGGTTTTGTTTTTTAGTGGTTTTTACATTTAATATAACACGAGACGTTTCTGTGACTATTTACTGATTGATTCTTTGAACTTGGAGTCGGGGTCTATGGCATGATGATTGGGCTGTTGATTGACTTCCTGAATGGTTTGTTGTGCGGATTGTCCTGGAATTCGGAGTTGATGTATAGAAACAGGCAGAAGAGAGAAGTAGCAGCCCTGTGCAGCTGTCTAAGGTTACCTTCACAGTATTGTTTAGTTTCAATTATTTTCTTTCTTGGCATCTCTTATGTCAAATTTACGCTCTTCATGTACTTCAACAGTTTCTAGCACGGGAGAAGGATGATGGTGCTCGGCGGAGTGCTGTCTCTGGCAAAAAGGTGAAAGATGATTAATCTCTTATCTGTTTTTGCACATGTTCGGAAATGCTTGTCATAGTTAAAAACTAAGAAAGTAATTTTACATTGTCCCAAAACACTTCTCACTCAAAGTCATCATTTTTGTTCTTTTGAGTTCAACAACGGGGCTTTGAAGATCTTAACTCATGACCTTTTGAGCATGGACACACATTTACATTGGTTGAGCTAACTTGTTTCTTTTTTCTTTTTTTTTTCCCTGAAAAGAGCTTGGTTGTTCACACTCATCGAGTTTTAATTTAGAAATGATTCTGAAATAGGGTAAAGGTGAATAATCATGGATTGACCTATTGGTTTTATACGGCCTTGTAAGTTATAAAATTTTTAGAGGTTATGAGCTGACCTAGTGGTCTTATACGGGCCTTGTTGAGTTATAAATTTTTTAGAAAGGGTTGACCTAGTGGGGTCTAATAATAGCCTTATACTCGGAGGTTTCCATGTAGGAAATAATTTAGATCAGTCAGTTGTCTCATACAAATAATTAGATAGGTTTAAGCTGACTGGAACACTCGATACAAATTAAAGAGATATTAAAGGTGAAAGTGTTAAAAGTACTCGTAAGGGAGTGCCTGGAAACTGGAAAGTGCTTCTGGTCAAAGTGAGTGTTGGTGAGGCACATTTAAGCTTTGTCAAATCAACTTTCAAGAATATTGTTGCCGTTGATAATTAGTTTTCATTAGTTAAAATGACTCTTAAGGAATTAAGAGGTAAATGATCAAATCGTAGTGGATGCCTACTTGAAAATTAATTTTCTATGAATTTTCTTAGCAACTAAATGTAGTAGCGTTAGTCGATTGAAAGTCGTGTGAGAATAGTTGAGGAATGTAAGTTGTTGTGGACATTGATGGATATACATAAAATTTAATTTTTTTTGCAGATATTGTTGAAACTTGATAAATCGAAGGAAGACAAAGCCGAGGAAAACAAAAGAAATGAGTTGCTGAAATTCTTGAACTCTAGCTTTGACTAA

mRNA sequence

ATGGCGGCCTCGTCTTCATCGGCGACTTCCGATTCTTCTTCTTCTTCCTCTCGCCGTCGCCAACGCCGTAGAACTCGCCGTGAAAAAGATCGGGACACCCTTAGGATTCGAAAGAAGTCTCGCTCTCATTCTAAACGCCGCCGCAGGCACCGCCGCTCCTCCTCAGATTCTCTATCTTCATCAGAATCCGATGACTCTCGAAGCGACAGCTCTTCTCAAAGTGAGCCTGAAACATCTGGTCGTTCTAAGCGGCATAAGAAGGATGATAGAACAAAGAAGGATAAGGAGAGGGAGCGAAGTAAGAGTCGTCACCATAAAAGGCGCAAGCAGAAAGCTAAAGAGAAACAGGCAGAAGAGAGAAGTAGCAGCCCTGTGCAGCTGTCTAAGTTTCTAGCACGGGAGAAGGATGATGGTGCTCGGCGGAGTGCTGTCTCTGGCAAAAAGATATTGTTGAAACTTGATAAATCGAAGGAAGACAAAGCCGAGGAAAACAAAAGAAATGAGTTGCTGAAATTCTTGAACTCTAGCTTTGACTAA

Coding sequence (CDS)

ATGGCGGCCTCGTCTTCATCGGCGACTTCCGATTCTTCTTCTTCTTCCTCTCGCCGTCGCCAACGCCGTAGAACTCGCCGTGAAAAAGATCGGGACACCCTTAGGATTCGAAAGAAGTCTCGCTCTCATTCTAAACGCCGCCGCAGGCACCGCCGCTCCTCCTCAGATTCTCTATCTTCATCAGAATCCGATGACTCTCGAAGCGACAGCTCTTCTCAAAGTGAGCCTGAAACATCTGGTCGTTCTAAGCGGCATAAGAAGGATGATAGAACAAAGAAGGATAAGGAGAGGGAGCGAAGTAAGAGTCGTCACCATAAAAGGCGCAAGCAGAAAGCTAAAGAGAAACAGGCAGAAGAGAGAAGTAGCAGCCCTGTGCAGCTGTCTAAGTTTCTAGCACGGGAGAAGGATGATGGTGCTCGGCGGAGTGCTGTCTCTGGCAAAAAGATATTGTTGAAACTTGATAAATCGAAGGAAGACAAAGCCGAGGAAAACAAAAGAAATGAGTTGCTGAAATTCTTGAACTCTAGCTTTGACTAA

Protein sequence

MAASSSSATSDSSSSSSRRRQRRRTRREKDRDTLRIRKKSRSHSKRRRRHRRSSSDSLSSSESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDKERERSKSRHHKRRKQKAKEKQAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD
Homology
[Close]
BLAST of Sed0011876 vs. NCBI nr
Match: XP_022136184.1 (serine/arginine-rich splicing factor 11 [Momordica charantia])

HSP 1 Score: 242.7 bits (618), Expect = 2.5e-60
Identity = 167/183 (91.26%), Postives = 172/183 (93.99%), Query Frame = 0 

Query: 1   MAASSSSA---TSDSSSSSSRRRQRRRTRREKDRDTLRIRKKSRSHSKRRRRHRRSSSDS 60
           MAASSSSA   TSDSSSSSSRRR+RRR+RR+KDRD LRIRKKSRSHSKRRRRHRRSSSDS
Sbjct: 1   MAASSSSATSFTSDSSSSSSRRRRRRRSRRDKDRDALRIRKKSRSHSKRRRRHRRSSSDS 60

Query: 61  LSS--SESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDKERERSKSRHHKRRKQKAKEK 120
           LSS  SES+ SRS SSSQSEPETSGRSKRHKK+DRTKKDKERERSKS HHKRRK KAKEK
Sbjct: 61  LSSSDSESEYSRSGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEK 120

Query: 121 QAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNS 179
           Q EERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNS
Sbjct: 121 QPEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNS 180

[Close]
BLAST of Sed0011876 vs. NCBI nr
Match: XP_008450603.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase G [Cucumis melo])

HSP 1 Score: 231.5 bits (589), Expect = 5.7e-57
Identity = 162/183 (88.52%), Postives = 169/183 (92.35%), Query Frame = 0 

Query: 1   MAASSSSAT---SDSSSSSSRRRQRRRTRREKDRDTLRIRKKSRSHSKRRRRHRRSSSDS 60
           MAASSS+ T   SDSSSSSSRRR+RRRTRREKDRDTLRIRKKSRSHSKR RRHRRSSSDS
Sbjct: 1   MAASSSATTSNSSDSSSSSSRRRRRRRTRREKDRDTLRIRKKSRSHSKRHRRHRRSSSDS 60

Query: 61  LSS--SESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDKERERSKSRHHKRRKQKAKEK 120
           LSS  SESD +RS+SSS+SEPETS RSKRHKK+DRTKKDKERERS+S HHKRRK KAKEK
Sbjct: 61  LSSSDSESDYARSNSSSESEPETSSRSKRHKKNDRTKKDKERERSRSHHHKRRKHKAKEK 120

Query: 121 QAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNS 179
           Q EE SSSPVQLSKFLAREKDDG RRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNS
Sbjct: 121 QPEE-SSSPVQLSKFLAREKDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNS 180

[Close]
BLAST of Sed0011876 vs. NCBI nr
Match: XP_038879353.1 (NKAP family protein [Benincasa hispida] >XP_038879354.1 NKAP family protein [Benincasa hispida] >XP_038879355.1 NKAP family protein [Benincasa hispida])

HSP 1 Score: 231.1 bits (588), Expect = 7.5e-57
Identity = 161/183 (87.98%), Postives = 169/183 (92.35%), Query Frame = 0 

Query: 1   MAASSSSA---TSDSSSSSSRRRQRRRTRREKDRDTLRIRKKSRSHSKRRRRHRRSSSDS 60
           MAASSSSA   TSDSSSSSSRRR+RRR RREKDRDTLR+RKKSRSHSKR RRHRRSSSDS
Sbjct: 1   MAASSSSATSYTSDSSSSSSRRRRRRRARREKDRDTLRVRKKSRSHSKRHRRHRRSSSDS 60

Query: 61  LSS--SESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDKERERSKSRHHKRRKQKAKEK 120
           LSS  SESD SR++SSSQSEPETSGRSKRHK++DR K+DKERERS+S HHKRRK KAKEK
Sbjct: 61  LSSSDSESDYSRTNSSSQSEPETSGRSKRHKRNDRAKRDKERERSRSHHHKRRKHKAKEK 120

Query: 121 QAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNS 179
           Q EE SSSPVQLSKFLAREKDDG RRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNS
Sbjct: 121 QPEE-SSSPVQLSKFLAREKDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNS 180

[Close]
BLAST of Sed0011876 vs. NCBI nr
Match: XP_023531665.1 (probable splicing factor, arginine/serine-rich 7 isoform X1 [Cucurbita pepo subsp. pepo] >KAG7022362.1 hypothetical protein SDJN02_16093 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 226.1 bits (575), Expect = 2.4e-55
Identity = 164/183 (89.62%), Postives = 167/183 (91.26%), Query Frame = 0 

Query: 1   MAASSSSA---TSDSSSSSSRRRQRRRTRREKDRDTLRIRKKSRSHSKRRRRHRRSSSDS 60
           MAASSSSA   TSDSSSSSSRRR+RRRTRREKDRD LRIRKKSRSHSKRRRRHRRSSS+S
Sbjct: 1   MAASSSSASPYTSDSSSSSSRRRRRRRTRREKDRDALRIRKKSRSHSKRRRRHRRSSSNS 60

Query: 61  LSS--SESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDKERERSKSRHHKRRKQKAKEK 120
           LSS  SESD SRS SSSQSEPE SGRSKRHKK+D TK  KERERSKSRHHKRRK KAKEK
Sbjct: 61  LSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTK--KERERSKSRHHKRRKHKAKEK 120

Query: 121 QAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNS 179
           Q EERSSSPVQLSKFLARE DDG RRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNS
Sbjct: 121 QPEERSSSPVQLSKFLARE-DDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNS 180

[Close]
BLAST of Sed0011876 vs. NCBI nr
Match: XP_022970036.1 (probable splicing factor, arginine/serine-rich 7 isoform X1 [Cucurbita maxima])

HSP 1 Score: 224.6 bits (571), Expect = 7.0e-55
Identity = 163/183 (89.07%), Postives = 167/183 (91.26%), Query Frame = 0 

Query: 1   MAASSSSA---TSDSSSSSSRRRQRRRTRREKDRDTLRIRKKSRSHSKRRRRHRRSSSDS 60
           MAASSSSA   TSDSSSSSSRRR+RRRTRREKDRD LRIRKKSRSHSKRRRRHRRSSS+S
Sbjct: 1   MAASSSSASPYTSDSSSSSSRRRRRRRTRREKDRDALRIRKKSRSHSKRRRRHRRSSSNS 60

Query: 61  LSS--SESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDKERERSKSRHHKRRKQKAKEK 120
           LSS  SESD SRS SSSQSEPE SGRSKRHKK+D TK  KERERSKS+HHKRRK KAKEK
Sbjct: 61  LSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTK--KERERSKSQHHKRRKHKAKEK 120

Query: 121 QAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNS 179
           Q EERSSSPVQLSKFLARE DDG RRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNS
Sbjct: 121 QPEERSSSPVQLSKFLARE-DDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNS 180

[Close]
BLAST of Sed0011876 vs. ExPASy TrEMBL
Match: A0A6J1C3K8 (serine/arginine-rich splicing factor 11 OS=Momordica charantia OX=3673 GN=LOC111007940 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 1.2e-60
Identity = 167/183 (91.26%), Postives = 172/183 (93.99%), Query Frame = 0 

Query: 1   MAASSSSA---TSDSSSSSSRRRQRRRTRREKDRDTLRIRKKSRSHSKRRRRHRRSSSDS 60
           MAASSSSA   TSDSSSSSSRRR+RRR+RR+KDRD LRIRKKSRSHSKRRRRHRRSSSDS
Sbjct: 1   MAASSSSATSFTSDSSSSSSRRRRRRRSRRDKDRDALRIRKKSRSHSKRRRRHRRSSSDS 60

Query: 61  LSS--SESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDKERERSKSRHHKRRKQKAKEK 120
           LSS  SES+ SRS SSSQSEPETSGRSKRHKK+DRTKKDKERERSKS HHKRRK KAKEK
Sbjct: 61  LSSSDSESEYSRSGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEK 120

Query: 121 QAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNS 179
           Q EERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNS
Sbjct: 121 QPEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNS 180

[Close]
BLAST of Sed0011876 vs. ExPASy TrEMBL
Match: A0A1S3BQ85 (peptidyl-prolyl cis-trans isomerase G OS=Cucumis melo OX=3656 GN=LOC103492142 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.8e-57
Identity = 162/183 (88.52%), Postives = 169/183 (92.35%), Query Frame = 0 

Query: 1   MAASSSSAT---SDSSSSSSRRRQRRRTRREKDRDTLRIRKKSRSHSKRRRRHRRSSSDS 60
           MAASSS+ T   SDSSSSSSRRR+RRRTRREKDRDTLRIRKKSRSHSKR RRHRRSSSDS
Sbjct: 1   MAASSSATTSNSSDSSSSSSRRRRRRRTRREKDRDTLRIRKKSRSHSKRHRRHRRSSSDS 60

Query: 61  LSS--SESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDKERERSKSRHHKRRKQKAKEK 120
           LSS  SESD +RS+SSS+SEPETS RSKRHKK+DRTKKDKERERS+S HHKRRK KAKEK
Sbjct: 61  LSSSDSESDYARSNSSSESEPETSSRSKRHKKNDRTKKDKERERSRSHHHKRRKHKAKEK 120

Query: 121 QAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNS 179
           Q EE SSSPVQLSKFLAREKDDG RRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNS
Sbjct: 121 QPEE-SSSPVQLSKFLAREKDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNS 180

[Close]
BLAST of Sed0011876 vs. ExPASy TrEMBL
Match: A0A6J1HZG5 (probable splicing factor, arginine/serine-rich 7 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469042 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 3.4e-55
Identity = 163/183 (89.07%), Postives = 167/183 (91.26%), Query Frame = 0 

Query: 1   MAASSSSA---TSDSSSSSSRRRQRRRTRREKDRDTLRIRKKSRSHSKRRRRHRRSSSDS 60
           MAASSSSA   TSDSSSSSSRRR+RRRTRREKDRD LRIRKKSRSHSKRRRRHRRSSS+S
Sbjct: 1   MAASSSSASPYTSDSSSSSSRRRRRRRTRREKDRDALRIRKKSRSHSKRRRRHRRSSSNS 60

Query: 61  LSS--SESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDKERERSKSRHHKRRKQKAKEK 120
           LSS  SESD SRS SSSQSEPE SGRSKRHKK+D TK  KERERSKS+HHKRRK KAKEK
Sbjct: 61  LSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTK--KERERSKSQHHKRRKHKAKEK 120

Query: 121 QAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNS 179
           Q EERSSSPVQLSKFLARE DDG RRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNS
Sbjct: 121 QPEERSSSPVQLSKFLARE-DDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNS 180

[Close]
BLAST of Sed0011876 vs. ExPASy TrEMBL
Match: A0A6J1EV15 (serine/arginine-rich splicing factor 11 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437872 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 4.4e-55
Identity = 163/183 (89.07%), Postives = 167/183 (91.26%), Query Frame = 0 

Query: 1   MAASSSSA---TSDSSSSSSRRRQRRRTRREKDRDTLRIRKKSRSHSKRRRRHRRSSSDS 60
           MAASSSSA   TSDSSSSSSRRR+RRRTRREKDR+ LRIRKKSRSHSKRRRRHRRSSS+S
Sbjct: 1   MAASSSSASPYTSDSSSSSSRRRRRRRTRREKDRNALRIRKKSRSHSKRRRRHRRSSSNS 60

Query: 61  LSS--SESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDKERERSKSRHHKRRKQKAKEK 120
           LSS  SESD SRS SSSQSEPE SGRSKRHKK+D TK  KERERSKSRHHKRRK KAKEK
Sbjct: 61  LSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTK--KERERSKSRHHKRRKHKAKEK 120

Query: 121 QAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNS 179
           Q EERSSSPVQLSKFLARE DDG RRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNS
Sbjct: 121 QPEERSSSPVQLSKFLARE-DDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNS 180

[Close]
BLAST of Sed0011876 vs. ExPASy TrEMBL
Match: A0A6J1I4D4 (NKAP family protein isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469042 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.3e-54
Identity = 162/183 (88.52%), Postives = 166/183 (90.71%), Query Frame = 0 

Query: 1   MAASSSSA---TSDSSSSSSRRRQRRRTRREKDRDTLRIRKKSRSHSKRRRRHRRSSSDS 60
           MAASSSSA   TSDSSSSSSRRR+RRRTRREKDRD LRIRKKSRSHSKRRRRHRRSSS+S
Sbjct: 1   MAASSSSASPYTSDSSSSSSRRRRRRRTRREKDRDALRIRKKSRSHSKRRRRHRRSSSNS 60

Query: 61  LSS--SESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDKERERSKSRHHKRRKQKAKEK 120
           LSS  SESD SRS SSSQSEPE SGRSKRHKK+D TKK   RERSKS+HHKRRK KAKEK
Sbjct: 61  LSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKK---RERSKSQHHKRRKHKAKEK 120

Query: 121 QAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNS 179
           Q EERSSSPVQLSKFLARE DDG RRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNS
Sbjct: 121 QPEERSSSPVQLSKFLARE-DDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNS 179

[Close]
BLAST of Sed0011876 vs. TAIR 10
Match: AT5G27860.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 140.6 bits (353), Expect = 1.2e-33
Identity = 116/183 (63.39%), Postives = 141/183 (77.05%), Query Frame = 0 

Query: 1   MAASSSSATSDSSSSSS----RRRQRRRTRR-EKDRDTLRIRKKSRSHSKRRRRHRRSSS 60
           MAASSSS++SD SS SS    RR+ RR  RR ++DRD+L++RKKSRS SK+RRR R+ SS
Sbjct: 1   MAASSSSSSSDVSSDSSDSHRRRKDRRHHRRNDRDRDSLKVRKKSRSTSKKRRR-RQHSS 60

Query: 61  DSLSSSESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDKERERSKSRHHKRRKQKAKEK 120
           DS     SD S SDSSS+S      +S+RHKK ++ KK K++ERSKS  HKR K + ++K
Sbjct: 61  DS-----SDSSYSDSSSESSDSEHEKSRRHKKHEKPKKAKDKERSKSHRHKRHKNRERKK 120

Query: 121 QAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNS 179
              E SS PV+LSKFL R+KDDG RRSAVSGKKILLK+DKSKEDKA E+KRNELLKFLN+
Sbjct: 121 GEGEGSSGPVKLSKFLNRDKDDGERRSAVSGKKILLKVDKSKEDKAAESKRNELLKFLNA 177

[Close]
BLAST of Sed0011876 vs. TAIR 10
Match: AT5G27860.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; Has 23049 Blast hits to 11981 proteins in 648 species: Archae - 2; Bacteria - 589; Metazoa - 13464; Fungi - 1977; Plants - 1635; Viruses - 89; Other Eukaryotes - 5293 (source: NCBI BLink). )

HSP 1 Score: 140.6 bits (353), Expect = 1.2e-33
Identity = 116/183 (63.39%), Postives = 141/183 (77.05%), Query Frame = 0 

Query: 1   MAASSSSATSDSSSSSS----RRRQRRRTRR-EKDRDTLRIRKKSRSHSKRRRRHRRSSS 60
           MAASSSS++SD SS SS    RR+ RR  RR ++DRD+L++RKKSRS SK+RRR R+ SS
Sbjct: 1   MAASSSSSSSDVSSDSSDSHRRRKDRRHHRRNDRDRDSLKVRKKSRSTSKKRRR-RQHSS 60

Query: 61  DSLSSSESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDKERERSKSRHHKRRKQKAKEK 120
           DS     SD S SDSSS+S      +S+RHKK ++ KK K++ERSKS  HKR K + ++K
Sbjct: 61  DS-----SDSSYSDSSSESSDSEHEKSRRHKKHEKPKKAKDKERSKSHRHKRHKNRERKK 120

Query: 121 QAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNS 179
              E SS PV+LSKFL R+KDDG RRSAVSGKKILLK+DKSKEDKA E+KRNELLKFLN+
Sbjct: 121 GEGEGSSGPVKLSKFLNRDKDDGERRSAVSGKKILLKVDKSKEDKAAESKRNELLKFLNA 177

The following BLAST results are available for this feature:
BLAST of Sed0011876 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022136184.12.5e-6091.26serine/arginine-rich splicing factor 11 [Momordica charantia][more]
XP_008450603.15.7e-5788.52PREDICTED: peptidyl-prolyl cis-trans isomerase G [Cucumis melo][more]
XP_038879353.17.5e-5787.98NKAP family protein [Benincasa hispida] >XP_038879354.1 NKAP family protein [Ben... [more]
XP_023531665.12.4e-5589.62probable splicing factor, arginine/serine-rich 7 isoform X1 [Cucurbita pepo subs... [more]
XP_022970036.17.0e-5589.07probable splicing factor, arginine/serine-rich 7 isoform X1 [Cucurbita maxima][more]
BLAST of Sed0011876 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0011876 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C3K81.2e-6091.26serine/arginine-rich splicing factor 11 OS=Momordica charantia OX=3673 GN=LOC111... [more]
A0A1S3BQ852.8e-5788.52peptidyl-prolyl cis-trans isomerase G OS=Cucumis melo OX=3656 GN=LOC103492142 PE... [more]
A0A6J1HZG53.4e-5589.07probable splicing factor, arginine/serine-rich 7 isoform X1 OS=Cucurbita maxima ... [more]
A0A6J1EV154.4e-5589.07serine/arginine-rich splicing factor 11 isoform X1 OS=Cucurbita moschata OX=3662... [more]
A0A6J1I4D41.3e-5488.52NKAP family protein isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469042 PE=4 ... [more]
BLAST of Sed0011876 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G27860.11.2e-3363.39unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G27860.21.2e-3363.39unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 95..115
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..96
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..53
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..145
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 130..145
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..111
NoneNo IPR availablePANTHERPTHR35760SI:CH211-22I13.2coord: 1..178

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0011876.1Sed0011876.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016853 isomerase activity