Sed0011788 (gene) Chayote v1

Overview


Name	Sed0011788
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Peroxiredoxins prx-1 prx-2 prx-3
Location	LG11: 628186 .. 628962 (+)
RNA-Seq Expression	Sed0011788
Synteny	Sed0011788

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCATCATATATTTATATTGTAATTAGCAAGTCTTTTTTGTCTTTTAAATTCTTGTGTGTTTCCATATTTCTTGCAGCCTGCAGATATGGCCTCCAATGGCAGCCTTAGCGTTGCGGTTTCCACGTCTCCTAAACAAGGGAATAGAGATGCCGAGACCACGACATCCAGTTCTTCGCCGAAAGGCCAGTGTTTGTGCTCGCCCACGATGCATCAAGGCTCCTTTAGGTGTCGGCTTCATCATTCGACGTCGTCGGCATGGATGAAACGATCGAAATCAATGCCTTCCGACAACCCTACGGCTTCTCTTTCTCCCAAAGAATCTCTTGGATCTTCCTAAGGGTATGTGCATGAAAACTAAATACATGTCACACTTCTTAAACTTAGGTCCATATTCTCTAAAGTTGTGGAGAACCAAAAAGGCTTTTAATTCATGGAATATGTAATATATTAAAAAGGTTGTGTTTATGTATTTGAAATGTAACTTCTATTTGATAATTCATAGTTCTTGTTGGGGATTTGTCATGTAGCCTGTAGGGTGAACTGATCTTTTTCTTATTTCTGTATTACTATTAAGATTTTTTTTTTGTTCAACAACAATTAGTGTGGAAAATTTTTCGAACACGTAACCTTTCGATCGCTTGTCTATAATTTATGCCAGTTAAGCTATATTCTTGTTCAATTTAGATCATTAATCCGATAAACAGCCTCGAACGGTAAATGGAGAGGTTGAAGGAATTAATATGACTATCCAAATATTGAGTAAAAAGTTCAATGGGC

mRNA sequence

TCATCATATATTTATATTGTAATTAGCAAGTCTTTTTTGTCTTTTAAATTCTTGTGTGTTTCCATATTTCTTGCAGCCTGCAGATATGGCCTCCAATGGCAGCCTTAGCGTTGCGGTTTCCACGTCTCCTAAACAAGGGAATAGAGATGCCGAGACCACGACATCCAGTTCTTCGCCGAAAGGCCAGTGTTTGTGCTCGCCCACGATGCATCAAGGCTCCTTTAGGTGTCGGCTTCATCATTCGACGTCGTCGGCATGGATGAAACGATCGAAATCAATGCCTTCCGACAACCCTACGGCTTCTCTTTCTCCCAAAGAATCTCTTGGATCTTCCTAAGGGTATGTGCATGAAAACTAAATACATGTCACACTTCTTAAACTTAGGTCCATATTCTCTAAAGTTGTGGAGAACCAAAAAGGCTTTTAATTCATGGAATATGTAATATATTAAAAAGGTTGTGTTTATGTATTTGAAATGTAACTTCTATTTGATAATTCATAGTTCTTGTTGGGGATTTGTCATGTAGCCTGTAGGGTGAACTGATCTTTTTCTTATTTCTGTATTACTATTAAGATTTTTTTTTTGTTCAACAACAATTAGTGTGGAAAATTTTTCGAACACGTAACCTTTCGATCGCTTGTCTATAATTTATGCCAGTTAAGCTATATTCTTGTTCAATTTAGATCATTAATCCGATAAACAGCCTCGAACGGTAAATGGAGAGGTTGAAGGAATTAATATGACTATCCAAATATTGAGTAAAAAGTTCAATGGGC

Coding sequence (CDS)

ATGGCCTCCAATGGCAGCCTTAGCGTTGCGGTTTCCACGTCTCCTAAACAAGGGAATAGAGATGCCGAGACCACGACATCCAGTTCTTCGCCGAAAGGCCAGTGTTTGTGCTCGCCCACGATGCATCAAGGCTCCTTTAGGTGTCGGCTTCATCATTCGACGTCGTCGGCATGGATGAAACGATCGAAATCAATGCCTTCCGACAACCCTACGGCTTCTCTTTCTCCCAAAGAATCTCTTGGATCTTCCTAA

Protein sequence

MASNGSLSVAVSTSPKQGNRDAETTTSSSSPKGQCLCSPTMHQGSFRCRLHHSTSSAWMKRSKSMPSDNPTASLSPKESLGSS

Homology

[Close]

BLAST of Sed0011788 vs. NCBI nr
Match: KAG7030425.1 (hypothetical protein SDJN02_08772 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.9 bits (333), Expect = 1.3e-27
Identity = 72/83 (86.75%), Postives = 75/83 (90.36%), Query Frame = 0


Query: 1   MASNGSLSVAVSTSPKQGNRDAETTTSSSSPKGQCLCSPTMHQGSFRCRLHHSTSSAWMK 60
           MAS+GSLSV VSTSPK GNRDAE T  SSSPKGQCLCSPTMHQGSFRCRLH STSSAWMK
Sbjct: 55  MASDGSLSVVVSTSPKHGNRDAE-TVRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMK 114

Query: 61  RSKSMPSDNPTASLSPKESLGSS 84
           RSKSMP+D+P ASLS KESLGSS
Sbjct: 115 RSKSMPADHPVASLSSKESLGSS 136

[Close]

BLAST of Sed0011788 vs. NCBI nr
Match: XP_022946647.1 (uncharacterized protein LOC111450652 [Cucurbita moschata] >XP_022946648.1 uncharacterized protein LOC111450652 [Cucurbita moschata] >XP_022946649.1 uncharacterized protein LOC111450652 [Cucurbita moschata])

HSP 1 Score: 130.6 bits (327), Expect = 6.4e-27
Identity = 71/83 (85.54%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 1   MASNGSLSVAVSTSPKQGNRDAETTTSSSSPKGQCLCSPTMHQGSFRCRLHHSTSSAWMK 60
           MAS+GSLSV VSTSPK GNRDAE T  SSSPKGQCLCSPTMHQGSFRCRLH S SSAWMK
Sbjct: 43  MASDGSLSVVVSTSPKHGNRDAE-TVRSSSPKGQCLCSPTMHQGSFRCRLHRSMSSAWMK 102

Query: 61  RSKSMPSDNPTASLSPKESLGSS 84
           RSKSMP+D+P ASLS KESLGSS
Sbjct: 103 RSKSMPADHPVASLSSKESLGSS 124

[Close]

BLAST of Sed0011788 vs. NCBI nr
Match: KAG6599447.1 (hypothetical protein SDJN03_09225, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130.6 bits (327), Expect = 6.4e-27
Identity = 71/83 (85.54%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 1   MASNGSLSVAVSTSPKQGNRDAETTTSSSSPKGQCLCSPTMHQGSFRCRLHHSTSSAWMK 60
           MAS+GSLSV VSTSPK GNRDAE T  SSSPKGQCLCSPTMHQGSFRCRLH S SSAWMK
Sbjct: 23  MASDGSLSVVVSTSPKHGNRDAE-TVRSSSPKGQCLCSPTMHQGSFRCRLHRSMSSAWMK 82

Query: 61  RSKSMPSDNPTASLSPKESLGSS 84
           RSKSMP+D+P ASLS KESLGSS
Sbjct: 83  RSKSMPADHPVASLSSKESLGSS 104

[Close]

BLAST of Sed0011788 vs. NCBI nr
Match: KGN60621.1 (hypothetical protein Csa_019426 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 1.1e-26
Identity = 70/83 (84.34%), Postives = 75/83 (90.36%), Query Frame = 0


Query: 1  MASNGSLSVAVSTSPKQGNRDAETTTSSSSPKGQCLCSPTMHQGSFRCRLHHSTSSAWMK 60
          MAS+GSLSV+VSTSPK  NRDAE T  S+SPKGQCLCSPTMHQGSFRCRLH STSSAWMK
Sbjct: 1  MASDGSLSVSVSTSPKHANRDAE-TVRSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMK 60

Query: 61 RSKSMPSDNPTASLSPKESLGSS 84
          RSKSMP++NP ASLSPKESL SS
Sbjct: 61 RSKSMPTNNPVASLSPKESLESS 82

[Close]

BLAST of Sed0011788 vs. NCBI nr
Match: KAA0061558.1 (hypothetical protein E6C27_scaffold41G001200 [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 1.4e-26
Identity = 70/83 (84.34%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 1  MASNGSLSVAVSTSPKQGNRDAETTTSSSSPKGQCLCSPTMHQGSFRCRLHHSTSSAWMK 60
          MAS+GSL V+VSTSPK  NRDAE T  SSSPKGQCLCSPTMHQGSFRCRLH STSSAWMK
Sbjct: 1  MASDGSLGVSVSTSPKHANRDAE-TMRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMK 60

Query: 61 RSKSMPSDNPTASLSPKESLGSS 84
          RSKSMP++NP ASLSPK SLGSS
Sbjct: 61 RSKSMPANNPVASLSPKGSLGSS 82

[Close]

BLAST of Sed0011788 vs. ExPASy TrEMBL
Match: A0A6J1G498 (uncharacterized protein LOC111450652 OS=Cucurbita moschata OX=3662 GN=LOC111450652 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.1e-27
Identity = 71/83 (85.54%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 1   MASNGSLSVAVSTSPKQGNRDAETTTSSSSPKGQCLCSPTMHQGSFRCRLHHSTSSAWMK 60
           MAS+GSLSV VSTSPK GNRDAE T  SSSPKGQCLCSPTMHQGSFRCRLH S SSAWMK
Sbjct: 43  MASDGSLSVVVSTSPKHGNRDAE-TVRSSSPKGQCLCSPTMHQGSFRCRLHRSMSSAWMK 102

Query: 61  RSKSMPSDNPTASLSPKESLGSS 84
           RSKSMP+D+P ASLS KESLGSS
Sbjct: 103 RSKSMPADHPVASLSSKESLGSS 124

[Close]

BLAST of Sed0011788 vs. ExPASy TrEMBL
Match: A0A0A0LKU3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004705 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.3e-27
Identity = 70/83 (84.34%), Postives = 75/83 (90.36%), Query Frame = 0


Query: 1  MASNGSLSVAVSTSPKQGNRDAETTTSSSSPKGQCLCSPTMHQGSFRCRLHHSTSSAWMK 60
          MAS+GSLSV+VSTSPK  NRDAE T  S+SPKGQCLCSPTMHQGSFRCRLH STSSAWMK
Sbjct: 1  MASDGSLSVSVSTSPKHANRDAE-TVRSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMK 60

Query: 61 RSKSMPSDNPTASLSPKESLGSS 84
          RSKSMP++NP ASLSPKESL SS
Sbjct: 61 RSKSMPTNNPVASLSPKESLESS 82

[Close]

BLAST of Sed0011788 vs. ExPASy TrEMBL
Match: A0A5A7V1X5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001200 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 6.9e-27
Identity = 70/83 (84.34%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 1  MASNGSLSVAVSTSPKQGNRDAETTTSSSSPKGQCLCSPTMHQGSFRCRLHHSTSSAWMK 60
          MAS+GSL V+VSTSPK  NRDAE T  SSSPKGQCLCSPTMHQGSFRCRLH STSSAWMK
Sbjct: 1  MASDGSLGVSVSTSPKHANRDAE-TMRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMK 60

Query: 61 RSKSMPSDNPTASLSPKESLGSS 84
          RSKSMP++NP ASLSPK SLGSS
Sbjct: 61 RSKSMPANNPVASLSPKGSLGSS 82

[Close]

BLAST of Sed0011788 vs. ExPASy TrEMBL
Match: A0A5D3CHP3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00230 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.0e-26
Identity = 69/83 (83.13%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 1  MASNGSLSVAVSTSPKQGNRDAETTTSSSSPKGQCLCSPTMHQGSFRCRLHHSTSSAWMK 60
          MAS+GSL V+VS+SPK  NRDAE T  SSSPKGQCLCSPTMHQGSFRCRLH STSSAWMK
Sbjct: 1  MASDGSLGVSVSSSPKHANRDAE-TMRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMK 60

Query: 61 RSKSMPSDNPTASLSPKESLGSS 84
          RSKSMP++NP ASLSPK SLGSS
Sbjct: 61 RSKSMPANNPVASLSPKGSLGSS 82

[Close]

BLAST of Sed0011788 vs. ExPASy TrEMBL
Match: A0A2P2LDI8 (Peroxiredoxins prx-1 prx-2 prx-3 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 8.4e-17
Identity = 50/75 (66.67%), Postives = 57/75 (76.00%), Query Frame = 0


Query: 6   SLSVAVSTSPKQGNRDAETTTSSSSPKGQCLCSPTMHQGSFRCRLHHS-TSSAWMKRSKS 65
           S S+ +STSPK GN +  T   SSSP+GQCLCSPT HQGSFRCRLH S +SSAWM RSKS
Sbjct: 50  SPSITISTSPKSGNGEGTTAAQSSSPRGQCLCSPTTHQGSFRCRLHRSRSSSAWMTRSKS 109

Query: 66  MPSDNPTASLSPKES 80
           MP +N   SLSPK +
Sbjct: 110 MPENNSVTSLSPKSA 124

[Close]

BLAST of Sed0011788 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related )

HSP 1 Score: 45.1 bits (105), Expect = 3.3e-05
Identity = 21/43 (48.84%), Postives = 27/43 (62.79%), Query Frame = 0


Query: 26 TSSSSPKGQCLCSPTMHQGSFRCRLHHSTSSAWMKRSKSMPSD 69
          + SSS +  CLC+PT H GSFRCR H   +   M R  S+PS+
Sbjct: 56 SKSSSVRQNCLCAPTTHPGSFRCRYHRRNAGLGMSRGTSVPSN 98

[Close]

BLAST of Sed0011788 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 40.8 bits (94), Expect = 6.2e-04
Identity = 27/67 (40.30%), Postives = 38/67 (56.72%), Query Frame = 0


Query: 18 GNRDAETTTSSSSPKGQCLCSPTMHQGSFRCRLHHSTSSAWMKRSKSM-----------P 74
          G+R     TS +  K  CLCSPT H GSFRCR+H S S   ++R+KS+           P
Sbjct: 29 GSRGLSRQTSMT--KTNCLCSPTTHPGSFRCRIHRSLS---LQRTKSIEAASLLDSPPKP 88

[Close]

BLAST of Sed0011788 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). )

HSP 1 Score: 40.8 bits (94), Expect = 6.2e-04
Identity = 27/67 (40.30%), Postives = 38/67 (56.72%), Query Frame = 0


Query: 18 GNRDAETTTSSSSPKGQCLCSPTMHQGSFRCRLHHSTSSAWMKRSKSM-----------P 74
          G+R     TS +  K  CLCSPT H GSFRCR+H S S   ++R+KS+           P
Sbjct: 29 GSRGLSRQTSMT--KTNCLCSPTTHPGSFRCRIHRSLS---LQRTKSIEAASLLDSPPKP 88

The following BLAST results are available for this feature:

BLAST of Sed0011788 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7030425.1	1.3e-27	86.75	hypothetical protein SDJN02_08772 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022946647.1	6.4e-27	85.54	uncharacterized protein LOC111450652 [Cucurbita moschata] >XP_022946648.1 unchar...	[more]
KAG6599447.1	6.4e-27	85.54	hypothetical protein SDJN03_09225, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN60621.1	1.1e-26	84.34	hypothetical protein Csa_019426 [Cucumis sativus]	[more]
KAA0061558.1	1.4e-26	84.34	hypothetical protein E6C27_scaffold41G001200 [Cucumis melo var. makuwa]	[more]

BLAST of Sed0011788 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0011788 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G498	3.1e-27	85.54	uncharacterized protein LOC111450652 OS=Cucurbita moschata OX=3662 GN=LOC1114506...	[more]
A0A0A0LKU3	5.3e-27	84.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004705 PE=4 SV=1	[more]
A0A5A7V1X5	6.9e-27	84.34	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CHP3	2.0e-26	83.13	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A2P2LDI8	8.4e-17	66.67	Peroxiredoxins prx-1 prx-2 prx-3 OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]

BLAST of Sed0011788 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13227.1	3.3e-05	48.84	serine-rich protein-related	[more]
AT1G67910.1	6.2e-04	40.30	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G67910.2	6.2e-04	40.30	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..83
None	No IPR available	PANTHER	PTHR33132	OSJNBB0118P14.9 PROTEIN	coord: 2..77
None	No IPR available	PANTHER	PTHR33132:SF37	SERINE-RICH PROTEIN-LIKE PROTEIN	coord: 2..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0011788.1	Sed0011788.1	mRNA