Sed0011620 (gene) Chayote v1

Overview


Name	Sed0011620
Type	gene
Organism	Sechium edule (Chayote v1)
Description	DNA-directed RNA polymerases II, IV and V subunit 6A-like
Location	LG13: 1046663 .. 1050008 (-)
RNA-Seq Expression	Sed0011620
Synteny	Sed0011620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGTTATCAGTTATTTCCAAGGCCCTGAATCTAAAGGAATTTAGGGTTCAACCAGAGAGGCGACAACCGTAACTCTAACGATCATCAATGGCGGATGACGATTACAATGATGCCGACATGGGGTTCTCTCTCTTTCTCCCTTATCTATTTCAATATTCTGTTCTCGAATCCTTTAATGTTACTATTATCAATTGATTTGTCAAACTCGAAACCCTAAATTTGAAACTAAGTTCGCTATTTCAAGTTAAACCTGGTGCAGTGCGGATTTTGGGATTGAATTTGTTAGGGAAATAGTTCGGTATGGTGAAATAGCGGAATTAGGTGTGTTACGAAGTTGATCAGAACCAAACTTGATTGTTTGAGCGATTCGGTACCTGTCCGATTCTCTGTAGCTATGAGCTTTGATGATGAACCTAAGAGAGTTGTGTTGGAAAGTGCATGATTTTCTGGCTGCTTAACCATCATGGAGAAGATTCCCTATCTAGGAATTAATTTCCTACAAATAAGAATTCTTTGACATCCAAATGTATGCGGTGAGTCCTTGACAATAGTCAAGGTGTGCGCAAGCTGGCCCATACAGTCACTGATATAAGAAAAAAAAAATGTTCTGGCCACTTAACAGCTCACATTGCCAATTTTGAGGGTATAGACATGGGCAATAAAGGTAGAATAGCTCGAGATGTATTGAATTAGGGTTTTTTTTATTGGTATAAACTTTTGACTTTTTTTTCCCACTCGAAAACATGGCTGGTGAAAAAATGGTTTTACTCAAAAATTTCAGTTTTTAACCTTCATAAGCAGATACTGAATTAAGTTTGTAATCCTGCGGATCCTATAACATAAGTTTTGGGATATAAAAAGATTTTTACGAATTTTGGTTTGTTACTAGATGCTTATGCGTAGCGTAGCATTTTGTTTTGGTGAACAATTTTATGTTATGGACTTATGGTGGTGGTTTTGCTTATTTGTTGGGAAATATACGTTTTCTTCATTAGTTAAAATGATCTCCGGTAAAAACCTTGTTATGTTTATAGATTACTATGTCTAAGATTTAAACATTATGGGTTGAAGGATTTTTGTAAAGCTTTTCTGCTAGTAGTTTATATTTATTAAGCTATAGGCCTTAGATTACTGAGTATATTATCTGTTCTTCAAGTTAGTCTTCTTTTCGCCTTATTCTCTGTTTTTTATGCCCCTTTTCTATTTGCATGAAGGTCTCACCCTGCTTCTAAATCAGTTCAATTTTCTGTACCAGCTATATTTTTTATAGAAAAAAAAAACTGTTAACTTGGCCACCAATATGCCGGGTTTAGGTTTTGAATCACATTTTCTCAAGTTTGTCTTCATTTGGGTTGATGAGTTGTATTAATTCCGCTAAATGTACACAAGGTGAACAGATAAATGGAGTATGTTTGTAAAAATATATGAATGAGGGCTTGAAATCTAATTCTTACTTGCTATTTGAACTGAATTAAATATATACTCCATTGTTAGCTGTAATTTGACTTTGACCACACTGCTACAATCTTGTTTTGTGAAAGACCTTTATATTTTCATCTAGGCTGATTGGAAGGTACAAATATCTTTCAGGTCTTATGCTAATAAGTGGTTTTTGCTGCAGATATGAAGATGAGCCTCCAGAACCCGAGATTGAGGTAAGTAATAATTAGTTCAATTTTATATGAAAGAATGTAGATGACTGTTCTTTCAGAAGTTAGCTAATGATAGTGGAACTGTGAATGATGTACAGGAAGGTGCTGAAGAAGAATTGGATAATATCAACAATGATGATGTTCCTGGCGATCCTGTTGAAGCTGAGGAAAAGGAAGATGGAGAACCTGTTGAACGTGTTCGTAAAACTTCAAAATTTATGACAAAGTACGAACGTGCTCGAATTTTGGGTACTCGTGCACTCCAAATCAGGTTCTCTTTTAGTCTTTTTTGACATTTGTTACATTAAATCCAAATTTTACATGCATAAATTTCATAAATGTATGATTTTTTTTTCCTCAGCATGAATGCTCCTGTGATGGTCGAGTTGGAGGGTGAGACTGATCCACTTGAGGTTAGATTTTTAAATGTTAAGCTAAAATCCTTGAAAAGCTCTATTTTGGTTATTGCATTTATTAGATGCATTTTAGTTGTCCCATTTGTTCATTGCATGGTTAGTACGCCCACTCAAGTAAAAGTTTGAATGAATCATACAAAAATGCCCCTTGGTTAAAATGAAGACTTCCTTCAATAGGGTATAAAGAATAAGTGAGAATAAGTGAAAACCAACTTCAAAGTTTGAAAGCAATTTCTGCTCGTATAGCTCAATCACATGAAGTATCGATGTGTGACTAAGATATCAGAGGTTCGAATCCTCCCATCCTCAAATGTTTTTTAACTTTAGAAAAGAAGTTTGAAGTTGATTTCCATAAAGATATTGTTTACCTTTTCAATCAACTGGTGCGCTTACCCAAAGAAATGTAGTGGATGCCATTCATGTGTTTGGCTTACAAAGAAACTAAAACCAGTCTTACAGTTCAAAGTTTGTAGGGCACAGGGGCCTACAGGGTGAAGCTTCGATTTCTGGTCATAAAAAATAAAAAGCTTCCTCTCAAATGTGGATTTATGCTTGTCCATCTTGAGTGCTTCCCATATTTTTTGGTTGGGCGTGGCATTATTCTCTGGCATCTCATATATAATCATGTACTGTCTTAGATTGCAATGAAGGAGCTTCGTGAGCGCAAGATACCCTTCACCATCCGCCGCTACCTGCCAGATGGAAGGTCTGATCCTCATCCTTCATTTTTTTTTTTTTTTACATTACTTTTCATTGACACATGAAAAAGTACAAAAGGATATATTGATGTGTAGATAACTAAAGGCAAGCAATTCTTTAGATTAATGTAACATATATATGCACAAGTTTTGGTTTTTTTTAAAATTTTTTTAGAAACGCCTAGTTTGATAATCATTTGGTTTTGAAAGTTAGAGTCTATAAATACTTACATTCACCTATAAATTTCATTGTTTTGTTATATGCCTTTTACATTGAAAACTAAAAAAAAAGAAAAAGAAAGTGTTTGAAAACTTGTTTTCCTTATAATTCTGATCAATTTGCGTAGTTATGAAGACTGGGGAGTTGATGAACTTATTGTGGAAGACTCTTGGAAAAGACAAGTTGGTGGCGCTTGATTGTTCTTTAGTTAGTTAGTTAGGTAACCGTTTCAACTGCTTTGTCATGTAATTTGCCTCTGAACGATGGCATGGTTGGCTCTCCTTTACTGCTTTGTTGCAAATCTCCTTATCTAACACTTAACTTTTATTACGATCTCTTAATTTAGTATTCGTTTGATAA

mRNA sequence

CTGTTATCAGTTATTTCCAAGGCCCTGAATCTAAAGGAATTTAGGGTTCAACCAGAGAGGCGACAACCGTAACTCTAACGATCATCAATGGCGGATGACGATTACAATGATGCCGACATGGGATATGAAGATGAGCCTCCAGAACCCGAGATTGAGGAAGGTGCTGAAGAAGAATTGGATAATATCAACAATGATGATGTTCCTGGCGATCCTGTTGAAGCTGAGGAAAAGGAAGATGGAGAACCTGTTGAACGTGTTCGTAAAACTTCAAAATTTATGACAAAGTACGAACGTGCTCGAATTTTGGGTACTCGTGCACTCCAAATCAGCATGAATGCTCCTGTGATGGTCGAGTTGGAGGGTGAGACTGATCCACTTGAGATTGCAATGAAGGAGCTTCGTGAGCGCAAGATACCCTTCACCATCCGCCGCTACCTGCCAGATGGAAGTTATGAAGACTGGGGAGTTGATGAACTTATTGTGGAAGACTCTTGGAAAAGACAAGTTGGTGGCGCTTGATTGTTCTTTAGTTAGTTAGTTAGGTAACCGTTTCAACTGCTTTGTCATGTAATTTGCCTCTGAACGATGGCATGGTTGGCTCTCCTTTACTGCTTTGTTGCAAATCTCCTTATCTAACACTTAACTTTTATTACGATCTCTTAATTTAGTATTCGTTTGATAA

Coding sequence (CDS)

ATGGCGGATGACGATTACAATGATGCCGACATGGGATATGAAGATGAGCCTCCAGAACCCGAGATTGAGGAAGGTGCTGAAGAAGAATTGGATAATATCAACAATGATGATGTTCCTGGCGATCCTGTTGAAGCTGAGGAAAAGGAAGATGGAGAACCTGTTGAACGTGTTCGTAAAACTTCAAAATTTATGACAAAGTACGAACGTGCTCGAATTTTGGGTACTCGTGCACTCCAAATCAGCATGAATGCTCCTGTGATGGTCGAGTTGGAGGGTGAGACTGATCCACTTGAGATTGCAATGAAGGAGCTTCGTGAGCGCAAGATACCCTTCACCATCCGCCGCTACCTGCCAGATGGAAGTTATGAAGACTGGGGAGTTGATGAACTTATTGTGGAAGACTCTTGGAAAAGACAAGTTGGTGGCGCTTGA

Protein sequence

MADDDYNDADMGYEDEPPEPEIEEGAEEELDNINNDDVPGDPVEAEEKEDGEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

Homology

[Close]

BLAST of Sed0011620 vs. NCBI nr
Match: XP_022923151.1 (DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita moschata] >XP_022984652.1 DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita maxima] >XP_022984654.1 DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita maxima] >XP_023551729.1 DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita pepo subsp. pepo] >KAG6576740.1 DNA-directed RNA polymerases II, IV and V subunit 6A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014784.1 DNA-directed RNA polymerases II, IV and V subunit 6A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 271.9 bits (694), Expect = 3.1e-69
Identity = 137/143 (95.80%), Postives = 140/143 (97.90%), Query Frame = 0


Query: 1   MADDDYNDADMGYEDEPPEPEIEEGAEEELDNINNDDVPGDPVEAEEKEDGEPVERVRKT 60
           MADDDYND DMGY+DEPPEPE+EEGAEEELDN NNDDVPG+PVEAEEKED EPVERVRKT
Sbjct: 1   MADDDYNDLDMGYDDEPPEPELEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKT 60

Query: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
           SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 121 SYEDWGVDELIVEDSWKRQVGGA 144
           SYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGA 143

[Close]

BLAST of Sed0011620 vs. NCBI nr
Match: XP_008439178.1 (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 6A [Cucumis melo])

HSP 1 Score: 269.6 bits (688), Expect = 1.5e-68
Identity = 136/143 (95.10%), Postives = 138/143 (96.50%), Query Frame = 0


Query: 1   MADDDYNDADMGYEDEPPEPEIEEGAEEELDNINNDDVPGDPVEAEEKEDGEPVERVRKT 60
           MADDDYND DMGYEDEPPEPEIEEGAEEELDN NNDD+ G+PVEAEEKED EPVER RKT
Sbjct: 1   MADDDYNDLDMGYEDEPPEPEIEEGAEEELDNTNNDDITGEPVEAEEKEDEEPVERARKT 60

Query: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
           SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 121 SYEDWGVDELIVEDSWKRQVGGA 144
           SYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGA 143

[Close]

BLAST of Sed0011620 vs. NCBI nr
Match: XP_022141284.1 (DNA-directed RNA polymerases II, IV and V subunit 6A [Momordica charantia])

HSP 1 Score: 268.9 bits (686), Expect = 2.6e-68
Identity = 137/143 (95.80%), Postives = 139/143 (97.20%), Query Frame = 0


Query: 1   MADDDYNDADMGYEDEPPEPEIEEGAEEELDNINNDDVPGDPVEAEEKEDGEPVERVRKT 60
           MADDDYND DMGYEDEPPEPE+EEGAEEELDN NNDDV G+PVEAEEKED EPVERVRKT
Sbjct: 1   MADDDYNDLDMGYEDEPPEPEMEEGAEEELDNNNNDDVLGEPVEAEEKEDEEPVERVRKT 60

Query: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
           SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 121 SYEDWGVDELIVEDSWKRQVGGA 144
           SYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGA 143

[Close]

BLAST of Sed0011620 vs. NCBI nr
Match: XP_022944842.1 (DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita moschata] >XP_022968530.1 DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita maxima] >XP_023541080.1 DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita pepo subsp. pepo] >KAG7013212.1 DNA-directed RNA polymerases II, IV and V subunit 6A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 268.5 bits (685), Expect = 3.4e-68
Identity = 135/143 (94.41%), Postives = 139/143 (97.20%), Query Frame = 0


Query: 1   MADDDYNDADMGYEDEPPEPEIEEGAEEELDNINNDDVPGDPVEAEEKEDGEPVERVRKT 60
           MADDDYND DMGYEDEPPEPE+EEGAEEELDN N DDVPG+PVEAE+KED EP+ERVRKT
Sbjct: 1   MADDDYNDVDMGYEDEPPEPEMEEGAEEELDNNNADDVPGEPVEAEDKEDEEPIERVRKT 60

Query: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
           SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 121 SYEDWGVDELIVEDSWKRQVGGA 144
           SYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGA 143

[Close]

BLAST of Sed0011620 vs. NCBI nr
Match: TYK31441.1 (DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucumis melo var. makuwa])

HSP 1 Score: 267.7 bits (683), Expect = 5.8e-68
Identity = 138/143 (96.50%), Postives = 139/143 (97.20%), Query Frame = 0


Query: 1   MADDDYNDADMGYEDEPPEPEIEEGAEEELDNINNDDVPGDPVEAEEKEDGEPVERVRKT 60
           MADDDYND DMGYEDEPPEPEIEEGAEEELD  NNDDVPG+PVEAEEKED EPVERVRKT
Sbjct: 1   MADDDYNDLDMGYEDEPPEPEIEEGAEEELDT-NNDDVPGEPVEAEEKEDEEPVERVRKT 60

Query: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
           SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 121 SYEDWGVDELIVEDSWKRQVGGA 144
           SYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGA 142

[Close]

BLAST of Sed0011620 vs. ExPASy Swiss-Prot
Match: Q9FJ98 (DNA-directed RNA polymerases II, IV and V subunit 6A OS=Arabidopsis thaliana OX=3702 GN=NRPB6A PE=1 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 7.1e-61
Identity = 119/143 (83.22%), Postives = 132/143 (92.31%), Query Frame = 0


Query: 1   MADDDYNDA-DMGYEDEPPEPEIEEGAEEELDNINNDDVPGDPVEAEEKEDGEPVERVRK 60
           MAD+DYND  D+GYEDEP EPEIEEG EE+++   NDDV G+P+EAE+K + EPV+R RK
Sbjct: 1   MADEDYNDVDDLGYEDEPAEPEIEEGVEEDVEMKENDDVNGEPIEAEDKVETEPVQRPRK 60

Query: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 120
           TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD
Sbjct: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPD 120

Query: 121 GSYEDWGVDELIVEDSWKRQVGG 143
           GS+E+WGVDELIVEDSWKRQVGG
Sbjct: 121 GSFEEWGVDELIVEDSWKRQVGG 143

[Close]

BLAST of Sed0011620 vs. ExPASy Swiss-Prot
Match: Q9SJ96 (DNA-directed RNA polymerases II and V subunit 6B OS=Arabidopsis thaliana OX=3702 GN=NRPB6B PE=1 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 3.9e-59
Identity = 119/143 (83.22%), Postives = 128/143 (89.51%), Query Frame = 0


Query: 1   MADDDYNDA-DMGYEDEPPEPEIEEGAEEELDNINNDDVPGDPVEAEEKEDGEPVERVRK 60
           MADDDYN+  D+GYEDEP EPEIEEG EE+ D   NDDV  DP+E E+K + EPV+R RK
Sbjct: 1   MADDDYNEVDDLGYEDEPAEPEIEEGVEEDADIKENDDVNVDPLETEDKVETEPVQRPRK 60

Query: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 120
           TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD
Sbjct: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPD 120

Query: 121 GSYEDWGVDELIVEDSWKRQVGG 143
            SYE+WGVDELIVEDSWKRQVGG
Sbjct: 121 MSYEEWGVDELIVEDSWKRQVGG 143

[Close]

BLAST of Sed0011620 vs. ExPASy Swiss-Prot
Match: P61219 (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Mus musculus OX=10090 GN=Polr2f PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.2e-29
Identity = 72/115 (62.61%), Postives = 87/115 (75.65%), Query Frame = 0


Query: 21  EIEEGAEEELDNINNDDVPG-DPVEAEEKEDGEPVERVRKTSKFMTKYERARILGTRALQ 80
           ++EE  +E LD++ N +  G + VE     +     + R T+ +MTKYERAR+LGTRALQ
Sbjct: 15  DVEE--DEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQ 74

Query: 81  ISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 135
           I+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Sbjct: 75  IAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIISD 127

[Close]

BLAST of Sed0011620 vs. ExPASy Swiss-Prot
Match: O88828 (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Rattus norvegicus OX=10116 GN=Polr2f PE=1 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.2e-29
Identity = 72/115 (62.61%), Postives = 87/115 (75.65%), Query Frame = 0


Query: 21  EIEEGAEEELDNINNDDVPG-DPVEAEEKEDGEPVERVRKTSKFMTKYERARILGTRALQ 80
           ++EE  +E LD++ N +  G + VE     +     + R T+ +MTKYERAR+LGTRALQ
Sbjct: 15  DVEE--DEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQ 74

Query: 81  ISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 135
           I+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Sbjct: 75  IAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIISD 127

[Close]

BLAST of Sed0011620 vs. ExPASy Swiss-Prot
Match: Q32PE0 (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Bos taurus OX=9913 GN=POLR2F PE=1 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 5.5e-29
Identity = 74/116 (63.79%), Postives = 87/116 (75.00%), Query Frame = 0


Query: 21  EIEEGAEEELDNINNDDVPGDPVEAEEKEDGE--PVERVRKTSKFMTKYERARILGTRAL 80
           ++EE  +E LD++ N +  G  V  E    GE     + R T+ +MTKYERAR+LGTRAL
Sbjct: 15  DVEE--DEGLDDLENAEEEGQ-VNVEILPSGERPQANQKRITTPYMTKYERARVLGTRAL 74

Query: 81  QISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 135
           QI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Sbjct: 75  QIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127

[Close]

BLAST of Sed0011620 vs. ExPASy TrEMBL
Match: A0A6J1J2R7 (DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucurbita maxima OX=3661 GN=LOC111482872 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.5e-69
Identity = 137/143 (95.80%), Postives = 140/143 (97.90%), Query Frame = 0


Query: 1   MADDDYNDADMGYEDEPPEPEIEEGAEEELDNINNDDVPGDPVEAEEKEDGEPVERVRKT 60
           MADDDYND DMGY+DEPPEPE+EEGAEEELDN NNDDVPG+PVEAEEKED EPVERVRKT
Sbjct: 1   MADDDYNDLDMGYDDEPPEPELEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKT 60

Query: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
           SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 121 SYEDWGVDELIVEDSWKRQVGGA 144
           SYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGA 143

[Close]

BLAST of Sed0011620 vs. ExPASy TrEMBL
Match: A0A6J1E614 (DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucurbita moschata OX=3662 GN=LOC111430903 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.5e-69
Identity = 137/143 (95.80%), Postives = 140/143 (97.90%), Query Frame = 0


Query: 1   MADDDYNDADMGYEDEPPEPEIEEGAEEELDNINNDDVPGDPVEAEEKEDGEPVERVRKT 60
           MADDDYND DMGY+DEPPEPE+EEGAEEELDN NNDDVPG+PVEAEEKED EPVERVRKT
Sbjct: 1   MADDDYNDLDMGYDDEPPEPELEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKT 60

Query: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
           SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 121 SYEDWGVDELIVEDSWKRQVGGA 144
           SYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGA 143

[Close]

BLAST of Sed0011620 vs. ExPASy TrEMBL
Match: A0A1S3AXR1 (DNA-directed RNA polymerases II, IV and V subunit 6A OS=Cucumis melo OX=3656 GN=LOC103484050 PE=3 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 7.4e-69
Identity = 136/143 (95.10%), Postives = 138/143 (96.50%), Query Frame = 0


Query: 1   MADDDYNDADMGYEDEPPEPEIEEGAEEELDNINNDDVPGDPVEAEEKEDGEPVERVRKT 60
           MADDDYND DMGYEDEPPEPEIEEGAEEELDN NNDD+ G+PVEAEEKED EPVER RKT
Sbjct: 1   MADDDYNDLDMGYEDEPPEPEIEEGAEEELDNTNNDDITGEPVEAEEKEDEEPVERARKT 60

Query: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
           SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 121 SYEDWGVDELIVEDSWKRQVGGA 144
           SYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGA 143

[Close]

BLAST of Sed0011620 vs. ExPASy TrEMBL
Match: A0A6J1CI61 (DNA-directed RNA polymerases II, IV and V subunit 6A OS=Momordica charantia OX=3673 GN=LOC111011721 PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 1.3e-68
Identity = 137/143 (95.80%), Postives = 139/143 (97.20%), Query Frame = 0


Query: 1   MADDDYNDADMGYEDEPPEPEIEEGAEEELDNINNDDVPGDPVEAEEKEDGEPVERVRKT 60
           MADDDYND DMGYEDEPPEPE+EEGAEEELDN NNDDV G+PVEAEEKED EPVERVRKT
Sbjct: 1   MADDDYNDLDMGYEDEPPEPEMEEGAEEELDNNNNDDVLGEPVEAEEKEDEEPVERVRKT 60

Query: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
           SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 121 SYEDWGVDELIVEDSWKRQVGGA 144
           SYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGA 143

[Close]

BLAST of Sed0011620 vs. ExPASy TrEMBL
Match: A0A6J1HXF2 (DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucurbita maxima OX=3661 GN=LOC111467735 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.6e-68
Identity = 135/143 (94.41%), Postives = 139/143 (97.20%), Query Frame = 0


Query: 1   MADDDYNDADMGYEDEPPEPEIEEGAEEELDNINNDDVPGDPVEAEEKEDGEPVERVRKT 60
           MADDDYND DMGYEDEPPEPE+EEGAEEELDN N DDVPG+PVEAE+KED EP+ERVRKT
Sbjct: 1   MADDDYNDVDMGYEDEPPEPEMEEGAEEELDNNNADDVPGEPVEAEDKEDEEPIERVRKT 60

Query: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
           SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 121 SYEDWGVDELIVEDSWKRQVGGA 144
           SYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGA 143

[Close]

BLAST of Sed0011620 vs. TAIR 10
Match: AT5G51940.1 (RNA polymerase Rpb6 )

HSP 1 Score: 234.6 bits (597), Expect = 5.0e-62
Identity = 119/143 (83.22%), Postives = 132/143 (92.31%), Query Frame = 0


Query: 1   MADDDYNDA-DMGYEDEPPEPEIEEGAEEELDNINNDDVPGDPVEAEEKEDGEPVERVRK 60
           MAD+DYND  D+GYEDEP EPEIEEG EE+++   NDDV G+P+EAE+K + EPV+R RK
Sbjct: 1   MADEDYNDVDDLGYEDEPAEPEIEEGVEEDVEMKENDDVNGEPIEAEDKVETEPVQRPRK 60

Query: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 120
           TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD
Sbjct: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPD 120

Query: 121 GSYEDWGVDELIVEDSWKRQVGG 143
           GS+E+WGVDELIVEDSWKRQVGG
Sbjct: 121 GSFEEWGVDELIVEDSWKRQVGG 143

[Close]

BLAST of Sed0011620 vs. TAIR 10
Match: AT2G04630.1 (RNA polymerase Rpb6 )

HSP 1 Score: 228.8 bits (582), Expect = 2.8e-60
Identity = 119/143 (83.22%), Postives = 128/143 (89.51%), Query Frame = 0


Query: 1   MADDDYNDA-DMGYEDEPPEPEIEEGAEEELDNINNDDVPGDPVEAEEKEDGEPVERVRK 60
           MADDDYN+  D+GYEDEP EPEIEEG EE+ D   NDDV  DP+E E+K + EPV+R RK
Sbjct: 1   MADDDYNEVDDLGYEDEPAEPEIEEGVEEDADIKENDDVNVDPLETEDKVETEPVQRPRK 60

Query: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 120
           TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD
Sbjct: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPD 120

Query: 121 GSYEDWGVDELIVEDSWKRQVGG 143
            SYE+WGVDELIVEDSWKRQVGG
Sbjct: 121 MSYEEWGVDELIVEDSWKRQVGG 143

The following BLAST results are available for this feature:

BLAST of Sed0011620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923151.1	3.1e-69	95.80	DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita moschata] >...	[more]
XP_008439178.1	1.5e-68	95.10	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 6A [Cucumis melo]	[more]
XP_022141284.1	2.6e-68	95.80	DNA-directed RNA polymerases II, IV and V subunit 6A [Momordica charantia]	[more]
XP_022944842.1	3.4e-68	94.41	DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita moschata] >...	[more]
TYK31441.1	5.8e-68	96.50	DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucumis melo var. mak...	[more]

BLAST of Sed0011620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJ98	7.1e-61	83.22	DNA-directed RNA polymerases II, IV and V subunit 6A OS=Arabidopsis thaliana OX=...	[more]
Q9SJ96	3.9e-59	83.22	DNA-directed RNA polymerases II and V subunit 6B OS=Arabidopsis thaliana OX=3702...	[more]
P61219	4.2e-29	62.61	DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Mus musculus OX=10...	[more]
O88828	4.2e-29	62.61	DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Rattus norvegicus ...	[more]
Q32PE0	5.5e-29	63.79	DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Bos taurus OX=9913...	[more]

BLAST of Sed0011620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J2R7	1.5e-69	95.80	DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucurbita maxima OX...	[more]
A0A6J1E614	1.5e-69	95.80	DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucurbita moschata ...	[more]
A0A1S3AXR1	7.4e-69	95.10	DNA-directed RNA polymerases II, IV and V subunit 6A OS=Cucumis melo OX=3656 GN=...	[more]
A0A6J1CI61	1.3e-68	95.80	DNA-directed RNA polymerases II, IV and V subunit 6A OS=Momordica charantia OX=3...	[more]
A0A6J1HXF2	1.6e-68	94.41	DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucurbita maxima OX...	[more]

BLAST of Sed0011620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51940.1	5.0e-62	83.22	RNA polymerase Rpb6	[more]
AT2G04630.1	2.8e-60	83.22	RNA polymerase Rpb6	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006110	RNA polymerase, subunit omega/K/RPB6	SMART	SM01409	RNA_pol_Rpb6_2	coord: 58..111 e-value: 4.7E-6 score: 36.1
IPR006110	RNA polymerase, subunit omega/K/RPB6	PFAM	PF01192	RNA_pol_Rpb6	coord: 60..111 e-value: 6.0E-16 score: 58.1
IPR028363	DNA-directed RNA polymerase, subunit RPB6	PIRSF	PIRSF500154	RPB6	coord: 1..134 e-value: 2.3E-55 score: 184.5
IPR006111	Archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit	PIRSF	PIRSF000778	RpoK/RPB6	coord: 1..134 e-value: 2.1E-48 score: 161.8
IPR006111	Archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit	HAMAP	MF_00192	RNApol_arch_K	coord: 62..117 score: 18.504309
IPR012293	RNA polymerase subunit, RPB6/omega	GENE3D	3.90.940.10		coord: 2..134 e-value: 4.4E-50 score: 170.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48
None	No IPR available	PANTHER	PTHR10773:SF16	DNA-DIRECTED RNA POLYMERASES II AND V SUBUNIT 6B	coord: 1..142
None	No IPR available	PANTHER	PTHR10773	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2	coord: 1..142
IPR020708	DNA-directed RNA polymerase, 14-18kDa subunit, conserved site	PROSITE	PS01111	RNA_POL_K_14KD	coord: 65..79
IPR036161	RPB6/omega subunit-like superfamily	SUPERFAMILY	63562	RPB6/omega subunit-like	coord: 1..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0011620.1	Sed0011620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005768	endosome
cellular_component	GO:0016020	membrane
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005665	RNA polymerase II, core complex
cellular_component	GO:0005666	RNA polymerase III complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0035091	phosphatidylinositol binding