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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCGATTCTTCTTCTTTTACTTATCATCTCCAAAGCTCAAGGTATTGATTAATTCCTCAACCTTTTTTTTTTGTTTAAATGTATTGAATTTGACATTTATAGTTTGTAGTTTCTTCCATAAAATGGGTCTATAACAATTATTAGGGGTGTTAAAATACGTGACAACCTGATTAATATGAACTAATCTGACTTCCGCTATCTAATTTATTTGAGTTGTGTTGAGTTCAAATAAATGAAATTTTCTTATGTTGAGTTGATTCTTGACTTGACTCGAACTGACTTAATTTTTTTTATTAATATTGTTTTTTATTTAATTTATAACTTAATCATATATGTATATTTATTTTATTTAATTATTATTTTTGGAGTTCTCGTTTCTTGAGGTTGAATAGATGATAGAAGTTATTAGGTGGATTTCTATTAAATAAATTAAATAAAAATTATATGCTCTAATTAAAAACGAAAGTAAAAGTAAGATGAATCCAACCCAATCTAATTCAAAATAAGGATTAAGTTGTTCAAACACATAATAAGGTTGGCTCGGTTATGGATTTACCAATTTAAAATTTTGGATTGATTCAAAAAATTCTTTTAATCCAACTCAATTCATATATACCTCAATAATAAAAGATCAAATAATTTTGTGTGACATTGATTTCTTTTTTCTTTCTTTTTTTTATATATACATATATTTTTTATTGACATAATAATTTTGTTTTTGAAGGTATTAGATTGTTGGAGAAAGAATTAAACAAAGAGTACAAGGAAAATGTAGCTGTTTTGGGGGGTAAAAATGGAGGAGATTTGTTGGTGAGCATGAAGAGAAAAGCCTTAAGAAAATTACCCTCTTCTCATTGGCTACCAGGCTTCCAAGAAGATTACCATGGTCCAAGAAGTCATAATTCTAGGCACCATTAG mRNA sequence ATGGCGATTCTTCTTCTTTTACTTATCATCTCCAAAGCTCAAGGTATTAGATTGTTGGAGAAAGAATTAAACAAAGAGTACAAGGAAAATGTAGCTGTTTTGGGGGGTAAAAATGGAGGAGATTTGTTGGTGAGCATGAAGAGAAAAGCCTTAAGAAAATTACCCTCTTCTCATTGGCTACCAGGCTTCCAAGAAGATTACCATGGTCCAAGAAGTCATAATTCTAGGCACCATTAG Coding sequence (CDS) ATGGCGATTCTTCTTCTTTTACTTATCATCTCCAAAGCTCAAGGTATTAGATTGTTGGAGAAAGAATTAAACAAAGAGTACAAGGAAAATGTAGCTGTTTTGGGGGGTAAAAATGGAGGAGATTTGTTGGTGAGCATGAAGAGAAAAGCCTTAAGAAAATTACCCTCTTCTCATTGGCTACCAGGCTTCCAAGAAGATTACCATGGTCCAAGAAGTCATAATTCTAGGCACCATTAG Protein sequence MAILLLLLIISKAQGIRLLEKELNKEYKENVAVLGGKNGGDLLVSMKRKALRKLPSSHWLPGFQEDYHGPRSHNSRHH
Homology
BLAST of Sed0011608 vs. NCBI nr
Match: KAG6586348.1 (Ubiquitin-like domain-containing protein CIP73, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 70.1 bits (170), Expect = 9.6e-09 Identity = 43/72 (59.72%), Postives = 51/72 (70.83%), Query Frame = 0
Query: 1 MAILLLLLIISKAQGIRLLEKELNKEYKENVAVLGGKNGGDLLVSMK----RKALRKLPS 60
MA+LLL LIIS+A+GIRLL+K ++KE K +NGGDLL +MK KA RK P
Sbjct: 6 MAVLLLFLIISEAEGIRLLDKRMSKEDK--------RNGGDLLGTMKWRAPNKAWRK-PY 65
Query: 61 SHWLPGFQEDYH 69
SHWLPG QEDYH
Sbjct: 66 SHWLPGIQEDYH 68
BLAST of Sed0011608 vs. ExPASy TrEMBL
Match: A0A0A0LJ48 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009400 PE=4 SV=1) HSP 1 Score: 96.3 bits (238), Expect = 6.1e-17 Identity = 54/83 (65.06%), Postives = 66/83 (79.52%), Query Frame = 0
Query: 1 MAILLL-LLIISKAQGIRLLEKELNKEYKENVAVLGGKNGGDLLVSMKR----KALRKLP 60
MA+LLL L+I+ +AQGIRLLEK ++KEYK++ L KNGGD L++MK+ +ALRK P
Sbjct: 1 MAVLLLFLMIMLQAQGIRLLEKGMSKEYKKSGGFLVNKNGGDSLMTMKKRAPIRALRK-P 60
Query: 61 SSHWLPGFQEDYHGPRSHNSRHH 79
SHWLPG QEDYHGPRSH SRHH
Sbjct: 61 YSHWLPGIQEDYHGPRSHKSRHH 82
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG6586348.1 | 9.6e-09 | 59.72 | Ubiquitin-like domain-containing protein CIP73, partial [Cucurbita argyrosperma ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LJ48 | 6.1e-17 | 65.06 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009400 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 59..78 |
Relationships
The following mRNA feature(s) are a part of this gene:
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