Sed0011433 (gene) Chayote v1

Overview
NameSed0011433
Typegene
OrganismSechium edule (Chayote v1)
DescriptionPentatricopeptide repeat-containing protein
LocationLG01: 17807178 .. 17808633 (-)
RNA-Seq ExpressionSed0011433
SyntenySed0011433
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAAAAGTGTGATAGATGAGCATTTGCGGTTGCAAGGCCACTCTGACCACTACATCAAACCACCGTTGAATGTTCCAACTTCAAACTTACATGCCTATGTCAAGCCACAAAATTTGATTGACAATTGTTTTTGTACTACAAAATTACAATTGTTTTTGGATATCAGGAAAAGGAACTTTTGAGAAAGAAACAAGAGATGATCAAAGAGGCTGAGCGAGCTAAACAGAACAAGGTGGTTGTAACCTTTGACTTGATTGGCCGAAAGGTAACAAATCATCTTCTATTTAACTATTGTTGACTAAATGTTTTCTTCTTAATGATTAACTATGTTTTAGTTCTAGCCAACAACATGGATAATAGACCACCATCCCTTACAGTGTAAAATATTGTTGGAAAGTTAGCTTCTCCAGGTTCCCTCTACATTTGTTAATGCGTAATAATTTGGTGGATTCATTCTGGAAATATTAATCTAATCTACTTTTCTCTTGGCCTGCTGCTCTCTATATTCTCTTGTGTTTTGTTTATTACATGTTTGGAAGTGATTTAAAATCATTTTGGTCACGTTCAAAATTACTCATAAACATGTTTTGTATCTTGGGTAGGTTCCTATGAATGAAGATGATGCTTCTGAACATGAATCACACAACAGTAGCTTGTGACCACCAGACGAAAGAGAAGTGAACCGGATTAAACCACTTAGATCCGGGCCCTGGAGAGAAGTCTACCAAAGGGAGAAACTCAAACAAAGCCGTAAGCGAAGGAGTATGTCTGGAGATTACTGGGAGGGTGCAGCATGAATTAAAGAACTTTATGGTGGAAAATTAGTTGGAATTATCGGTTAACAGGCTTCCTAATTATTAATGTTATCTAGATGCTCATTAAAGCATAATCAACTTAACAGATTTATGTTCTATTGTCCCTAAATGCAACGTTAAATATTTCACTACAGAAGATTTCTCTTCTAATTTCATTGGCCTCGTATATTCCATTGGCCACATTTTACTTCCGAGCCGACAGTTTTTTTAATACTTATATTATGTACTTTTTTTGGTTTACTTGCATAGGAATTTAATTCTACTTTAAAGGGCTCATTTTGGTTCGTTTCAGATTGGAAAGCCTGACTTGATAAAAGCTGGACAGCCATGATTGTTAGTTATGCAGATGCTCAGCATGGAAAAGGTGCAGAAGCTTTGTGTCTATGAACTTATGAAGAAAGAAGGAATCAAACCTAATCCAGTCACCTTTGTTTGGGTTTTGTCTACTTGTAGCCATAATGGTTTGGTCGATGAAGCTTATTTCCACCTTAATGATATACAGCCGGGATATCAACATTATGCTTGTATGGTAAATCTTCTTGGTTGGTATGGGAAATTGAAAAAAGTAGAAGAACTGATTAACAATATGCCTATTGAACCTGATGCTCTCGTTTGGGGGATGCTTCTTGCTGTTTGA

mRNA sequence

ATGGGGAAAAGTGTGATAGATGAGCATTTGCGGTTGCAAGGCCACTCTGACCACTACATCAAACCACCGTTGAATGAAAAGGAACTTTTGAGAAAGAAACAAGAGATGATCAAAGAGGCTGAGCGAGCTAAACAGAACAAGGTGGTTGTAACCTTTGACTTGATTGGCCGAAAGATGCTCAGCATGGAAAAGGTGCAGAAGCTTTGTGTCTATGAACTTATGAAGAAAGAAGGAATCAAACCTAATCCAGTCACCTTTGTTTGGGTTTTGTCTACTTGTAGCCATAATGGTTTGGTCGATGAAGCTTATTTCCACCTTAATGATATACAGCCGGGATATCAACATTATGCTTGTATGGTAAATCTTCTTGGTTGGTATGGGAAATTGAAAAAAGTAGAAGAACTGATTAACAATATGCCTATTGAACCTGATGCTCTCGTTTGGGGGATGCTTCTTGCTGTTTGA

Coding sequence (CDS)

ATGGGGAAAAGTGTGATAGATGAGCATTTGCGGTTGCAAGGCCACTCTGACCACTACATCAAACCACCGTTGAATGAAAAGGAACTTTTGAGAAAGAAACAAGAGATGATCAAAGAGGCTGAGCGAGCTAAACAGAACAAGGTGGTTGTAACCTTTGACTTGATTGGCCGAAAGATGCTCAGCATGGAAAAGGTGCAGAAGCTTTGTGTCTATGAACTTATGAAGAAAGAAGGAATCAAACCTAATCCAGTCACCTTTGTTTGGGTTTTGTCTACTTGTAGCCATAATGGTTTGGTCGATGAAGCTTATTTCCACCTTAATGATATACAGCCGGGATATCAACATTATGCTTGTATGGTAAATCTTCTTGGTTGGTATGGGAAATTGAAAAAAGTAGAAGAACTGATTAACAATATGCCTATTGAACCTGATGCTCTCGTTTGGGGGATGCTTCTTGCTGTTTGA

Protein sequence

MGKSVIDEHLRLQGHSDHYIKPPLNEKELLRKKQEMIKEAERAKQNKVVVTFDLIGRKMLSMEKVQKLCVYELMKKEGIKPNPVTFVWVLSTCSHNGLVDEAYFHLNDIQPGYQHYACMVNLLGWYGKLKKVEELINNMPIEPDALVWGMLLAV
Homology
[Close]
BLAST of Sed0011433 vs. NCBI nr
Match: XP_022137435.1 (pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Momordica charantia] >XP_022137436.1 pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Momordica charantia] >XP_022137437.1 pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Momordica charantia] >XP_022137439.1 pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Momordica charantia])

HSP 1 Score: 153.7 bits (387), Expect = 1.3e-33
Identity = 73/94 (77.66%), Postives = 80/94 (85.11%), Query Frame = 0 

Query: 66  QKLCVYELMKKEGIKPNPVTFVWVLSTCSHNGLVDEAYFHLND------IQPGYQHYACM 125
           + LCVYELMKKEGIKP+PVTFV VLS CSHNGLVDEAYFHLN       IQPGY+HYACM
Sbjct: 733 EALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHYACM 792

Query: 126 VNLLGWYGKLKKVEELINNMPIEPDALVWGMLLA 154
           V+LLG  G+LK+ EELINNMPIEPDAL+WG LLA
Sbjct: 793 VDLLGRCGRLKEAEELINNMPIEPDALIWGTLLA 826

[Close]
BLAST of Sed0011433 vs. NCBI nr
Match: XP_023519257.1 (pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 151.8 bits (382), Expect = 5.0e-33
Identity = 72/94 (76.60%), Postives = 80/94 (85.11%), Query Frame = 0 

Query: 66  QKLCVYELMKKEGIKPNPVTFVWVLSTCSHNGLVDEAYFHLND------IQPGYQHYACM 125
           + LCVYELMKKEGIKP+PVTFV VLS CSHNGLVDEAYFHLN       IQPG++HYACM
Sbjct: 733 EALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGHRHYACM 792

Query: 126 VNLLGWYGKLKKVEELINNMPIEPDALVWGMLLA 154
           V+LLG  G+LK+ EELINNMPIEPDAL+WG LLA
Sbjct: 793 VDLLGRCGQLKRAEELINNMPIEPDALIWGTLLA 826

[Close]
BLAST of Sed0011433 vs. NCBI nr
Match: XP_022923751.1 (pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Cucurbita moschata] >KAG6584457.1 Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020048.1 Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151.8 bits (382), Expect = 5.0e-33
Identity = 72/94 (76.60%), Postives = 80/94 (85.11%), Query Frame = 0 

Query: 66  QKLCVYELMKKEGIKPNPVTFVWVLSTCSHNGLVDEAYFHLND------IQPGYQHYACM 125
           + LCVYELMKKEGIKP+PVTFV VLS CSHNGLVDEAYFHLN       IQPG++HYACM
Sbjct: 733 EALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGHRHYACM 792

Query: 126 VNLLGWYGKLKKVEELINNMPIEPDALVWGMLLA 154
           V+LLG  G+LK+ EELINNMPIEPDAL+WG LLA
Sbjct: 793 VDLLGRCGQLKRAEELINNMPIEPDALIWGTLLA 826

[Close]
BLAST of Sed0011433 vs. NCBI nr
Match: XP_038893557.1 (pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Benincasa hispida])

HSP 1 Score: 151.8 bits (382), Expect = 5.0e-33
Identity = 73/94 (77.66%), Postives = 79/94 (84.04%), Query Frame = 0 

Query: 66  QKLCVYELMKKEGIKPNPVTFVWVLSTCSHNGLVDEAYFHLND------IQPGYQHYACM 125
           + LCVYELMKKEG KP+PVTFV VLS CSHNGLVDEAYFHLN       IQPGY+HYACM
Sbjct: 747 EALCVYELMKKEGFKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHYACM 806

Query: 126 VNLLGWYGKLKKVEELINNMPIEPDALVWGMLLA 154
           V+LLG  GKLK+ EELIN+MPIEPDALVWG LLA
Sbjct: 807 VDLLGRCGKLKEAEELINHMPIEPDALVWGTLLA 840

[Close]
BLAST of Sed0011433 vs. NCBI nr
Match: XP_023001341.1 (pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Cucurbita maxima])

HSP 1 Score: 151.8 bits (382), Expect = 5.0e-33
Identity = 72/94 (76.60%), Postives = 80/94 (85.11%), Query Frame = 0 

Query: 66  QKLCVYELMKKEGIKPNPVTFVWVLSTCSHNGLVDEAYFHLND------IQPGYQHYACM 125
           + LCVYELMKKEGIKP+PVTFV VLS CSHNGLVDEAYFHLN       IQPG++HYACM
Sbjct: 733 EALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGHRHYACM 792

Query: 126 VNLLGWYGKLKKVEELINNMPIEPDALVWGMLLA 154
           V+LLG  G+LK+ EELINNMPIEPDAL+WG LLA
Sbjct: 793 VDLLGRCGQLKRAEELINNMPIEPDALIWGTLLA 826

[Close]
BLAST of Sed0011433 vs. ExPASy Swiss-Prot
Match: Q9CA56 (Pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-E69 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.5e-24
Identity = 55/94 (58.51%), Postives = 68/94 (72.34%), Query Frame = 0 

Query: 66  QKLCVYELMKKEGIKPNPVTFVWVLSTCSHNGLVDEAYFHLND------IQPGYQHYACM 125
           + L VY LMK++G KP+ VTFV VLS CSH GLV+E+YFHLN       I+P  +HY CM
Sbjct: 736 EALQVYNLMKEKGFKPDKVTFVGVLSACSHGGLVEESYFHLNSMVKDYGIEPENRHYVCM 795

Query: 126 VNLLGWYGKLKKVEELINNMPIEPDALVWGMLLA 154
           V+ LG  G+L++ E  INNM I+PDALVWG LLA
Sbjct: 796 VDALGRSGRLREAESFINNMHIKPDALVWGTLLA 829

[Close]
BLAST of Sed0011433 vs. ExPASy Swiss-Prot
Match: Q9SY02 (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H24 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-18
Identity = 46/88 (52.27%), Postives = 57/88 (64.77%), Query Frame = 0 

Query: 71  YELMKKEGIKPNPVTFVWVLSTCSHNGLVDEA--YFHL----NDIQPGYQHYACMVNLLG 130
           +E MK+EG+KP+  T V VLS CSH GLVD+   YF+       + P  QHYACMV+LLG
Sbjct: 498 FESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLG 557

Query: 131 WYGKLKKVEELINNMPIEPDALVWGMLL 153
             G L+    L+ NMP EPDA +WG LL
Sbjct: 558 RAGLLEDAHNLMKNMPFEPDAAIWGTLL 585

[Close]
BLAST of Sed0011433 vs. ExPASy Swiss-Prot
Match: Q9ZVF4 (Pentatricopeptide repeat-containing protein At2g01510, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H37 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.8e-18
Identity = 51/120 (42.50%), Postives = 72/120 (60.00%), Query Frame = 0 

Query: 41  ERAKQNKVVVTFDLIGRKMLSMEKVQKLCVYELMKKEGIKPNPVTFVWVLSTCSHNGLVD 100
           E  KQ  VV    +I    ++ +  + L ++  M+ EG++PN VTF+ VLS CSH GLV+
Sbjct: 269 EEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVN 328

Query: 101 EA--YFHL------NDIQPGYQHYACMVNLLGWYGKLKKVEELINNMPIEPDALVWGMLL 153
           E   YF L       +++P  +HYACMV+LLG  G L++  E I  MP+EPD  +WG LL
Sbjct: 329 EGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALL 388

[Close]
BLAST of Sed0011433 vs. ExPASy Swiss-Prot
Match: Q9LS72 (Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E27 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.9e-17
Identity = 38/89 (42.70%), Postives = 63/89 (70.79%), Query Frame = 0 

Query: 70  VYELMKKEGIKPNPVTFVWVLSTCSHNGLVDEA--YFH----LNDIQPGYQHYACMVNLL 129
           ++  M++EGI+P+ VTF+ VL +C+H GL+DE   YF+    + D+ P  +HY C+V+LL
Sbjct: 403 LFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLL 462

Query: 130 GWYGKLKKVEELINNMPIEPDALVWGMLL 153
           G  G+LK+  +++  MP+EP+ ++WG LL
Sbjct: 463 GRVGRLKEAIKVVQTMPMEPNVVIWGALL 491

[Close]
BLAST of Sed0011433 vs. ExPASy Swiss-Prot
Match: P0C8Q8 (Pentatricopeptide repeat-containing protein At5g19020, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E42 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.4e-16
Identity = 41/92 (44.57%), Postives = 61/92 (66.30%), Query Frame = 0 

Query: 68  LCVYELMKKEGIKPNPVTFVWVLSTCSHNGLVD--EAYFHL----NDIQPGYQHYACMVN 127
           L +Y  ++   IKPN +TFV VLS C H GLV+  + YF      + I+P  +HY CMV+
Sbjct: 527 LDLYSDLQSLPIKPNSITFVGVLSACCHAGLVELGKTYFESMKSDHGIEPDIKHYGCMVD 586

Query: 128 LLGWYGKLKKVEELINNMPIEPDALVWGMLLA 154
           LLG  G+L++ +E+I  MP++ D ++WGMLL+
Sbjct: 587 LLGKAGRLEEAKEMIKKMPVKADVMIWGMLLS 618

[Close]
BLAST of Sed0011433 vs. ExPASy TrEMBL
Match: A0A6J1C6M8 (pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008883 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 6.3e-34
Identity = 73/94 (77.66%), Postives = 80/94 (85.11%), Query Frame = 0 

Query: 66  QKLCVYELMKKEGIKPNPVTFVWVLSTCSHNGLVDEAYFHLND------IQPGYQHYACM 125
           + LCVYELMKKEGIKP+PVTFV VLS CSHNGLVDEAYFHLN       IQPGY+HYACM
Sbjct: 733 EALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHYACM 792

Query: 126 VNLLGWYGKLKKVEELINNMPIEPDALVWGMLLA 154
           V+LLG  G+LK+ EELINNMPIEPDAL+WG LLA
Sbjct: 793 VDLLGRCGRLKEAEELINNMPIEPDALIWGTLLA 826

[Close]
BLAST of Sed0011433 vs. ExPASy TrEMBL
Match: A0A6J1KIC5 (pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111495501 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 2.4e-33
Identity = 72/94 (76.60%), Postives = 80/94 (85.11%), Query Frame = 0 

Query: 66  QKLCVYELMKKEGIKPNPVTFVWVLSTCSHNGLVDEAYFHLND------IQPGYQHYACM 125
           + LCVYELMKKEGIKP+PVTFV VLS CSHNGLVDEAYFHLN       IQPG++HYACM
Sbjct: 733 EALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGHRHYACM 792

Query: 126 VNLLGWYGKLKKVEELINNMPIEPDALVWGMLLA 154
           V+LLG  G+LK+ EELINNMPIEPDAL+WG LLA
Sbjct: 793 VDLLGRCGQLKRAEELINNMPIEPDALIWGTLLA 826

[Close]
BLAST of Sed0011433 vs. ExPASy TrEMBL
Match: A0A6J1E7L2 (pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111431363 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 2.4e-33
Identity = 72/94 (76.60%), Postives = 80/94 (85.11%), Query Frame = 0 

Query: 66  QKLCVYELMKKEGIKPNPVTFVWVLSTCSHNGLVDEAYFHLND------IQPGYQHYACM 125
           + LCVYELMKKEGIKP+PVTFV VLS CSHNGLVDEAYFHLN       IQPG++HYACM
Sbjct: 733 EALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGHRHYACM 792

Query: 126 VNLLGWYGKLKKVEELINNMPIEPDALVWGMLLA 154
           V+LLG  G+LK+ EELINNMPIEPDAL+WG LLA
Sbjct: 793 VDLLGRCGQLKRAEELINNMPIEPDALIWGTLLA 826

[Close]
BLAST of Sed0011433 vs. ExPASy TrEMBL
Match: A0A5A7T3B5 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00710 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 2.3e-31
Identity = 69/94 (73.40%), Postives = 77/94 (81.91%), Query Frame = 0 

Query: 66  QKLCVYELMKKEGIKPNPVTFVWVLSTCSHNGLVDEAYFHLND------IQPGYQHYACM 125
           + LC YELMKKEG KP+PVTFV VLS CSHNGLVDEAYFHLN       IQPG +HYAC+
Sbjct: 690 EALCAYELMKKEGFKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVEDYGIQPGCRHYACL 749

Query: 126 VNLLGWYGKLKKVEELINNMPIEPDALVWGMLLA 154
           V+LLG  GKLK+ EELIN+MPIEPDAL+WG LLA
Sbjct: 750 VDLLGRCGKLKEAEELINHMPIEPDALIWGTLLA 783

[Close]
BLAST of Sed0011433 vs. ExPASy TrEMBL
Match: A0A5D3BIJ5 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00800 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 2.3e-31
Identity = 69/94 (73.40%), Postives = 77/94 (81.91%), Query Frame = 0 

Query: 66  QKLCVYELMKKEGIKPNPVTFVWVLSTCSHNGLVDEAYFHLND------IQPGYQHYACM 125
           + LC YELMKKEG KP+PVTFV VLS CSHNGLVDEAYFHLN       IQPG +HYAC+
Sbjct: 771 EALCAYELMKKEGFKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVEDYGIQPGCRHYACL 830

Query: 126 VNLLGWYGKLKKVEELINNMPIEPDALVWGMLLA 154
           V+LLG  GKLK+ EELIN+MPIEPDAL+WG LLA
Sbjct: 831 VDLLGRCGKLKEAEELINHMPIEPDALIWGTLLA 864

[Close]
BLAST of Sed0011433 vs. TAIR 10
Match: AT1G74600.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 114.0 bits (284), Expect = 1.1e-25
Identity = 55/94 (58.51%), Postives = 68/94 (72.34%), Query Frame = 0 

Query: 66  QKLCVYELMKKEGIKPNPVTFVWVLSTCSHNGLVDEAYFHLND------IQPGYQHYACM 125
           + L VY LMK++G KP+ VTFV VLS CSH GLV+E+YFHLN       I+P  +HY CM
Sbjct: 736 EALQVYNLMKEKGFKPDKVTFVGVLSACSHGGLVEESYFHLNSMVKDYGIEPENRHYVCM 795

Query: 126 VNLLGWYGKLKKVEELINNMPIEPDALVWGMLLA 154
           V+ LG  G+L++ E  INNM I+PDALVWG LLA
Sbjct: 796 VDALGRSGRLREAESFINNMHIKPDALVWGTLLA 829

[Close]
BLAST of Sed0011433 vs. TAIR 10
Match: AT4G02750.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-19
Identity = 46/88 (52.27%), Postives = 57/88 (64.77%), Query Frame = 0 

Query: 71  YELMKKEGIKPNPVTFVWVLSTCSHNGLVDEA--YFHL----NDIQPGYQHYACMVNLLG 130
           +E MK+EG+KP+  T V VLS CSH GLVD+   YF+       + P  QHYACMV+LLG
Sbjct: 498 FESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLG 557

Query: 131 WYGKLKKVEELINNMPIEPDALVWGMLL 153
             G L+    L+ NMP EPDA +WG LL
Sbjct: 558 RAGLLEDAHNLMKNMPFEPDAAIWGTLL 585

[Close]
BLAST of Sed0011433 vs. TAIR 10
Match: AT2G01510.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 93.2 bits (230), Expect = 2.0e-19
Identity = 51/120 (42.50%), Postives = 72/120 (60.00%), Query Frame = 0 

Query: 41  ERAKQNKVVVTFDLIGRKMLSMEKVQKLCVYELMKKEGIKPNPVTFVWVLSTCSHNGLVD 100
           E  KQ  VV    +I    ++ +  + L ++  M+ EG++PN VTF+ VLS CSH GLV+
Sbjct: 269 EEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVN 328

Query: 101 EA--YFHL------NDIQPGYQHYACMVNLLGWYGKLKKVEELINNMPIEPDALVWGMLL 153
           E   YF L       +++P  +HYACMV+LLG  G L++  E I  MP+EPD  +WG LL
Sbjct: 329 EGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALL 388

[Close]
BLAST of Sed0011433 vs. TAIR 10
Match: AT3G29230.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 88.2 bits (217), Expect = 6.3e-18
Identity = 38/89 (42.70%), Postives = 63/89 (70.79%), Query Frame = 0 

Query: 70  VYELMKKEGIKPNPVTFVWVLSTCSHNGLVDEA--YFH----LNDIQPGYQHYACMVNLL 129
           ++  M++EGI+P+ VTF+ VL +C+H GL+DE   YF+    + D+ P  +HY C+V+LL
Sbjct: 403 LFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLL 462

Query: 130 GWYGKLKKVEELINNMPIEPDALVWGMLL 153
           G  G+LK+  +++  MP+EP+ ++WG LL
Sbjct: 463 GRVGRLKEAIKVVQTMPMEPNVVIWGALL 491

[Close]
BLAST of Sed0011433 vs. TAIR 10
Match: AT5G19020.1 (mitochondrial editing factor 18 )

HSP 1 Score: 85.9 bits (211), Expect = 3.1e-17
Identity = 41/92 (44.57%), Postives = 61/92 (66.30%), Query Frame = 0 

Query: 68  LCVYELMKKEGIKPNPVTFVWVLSTCSHNGLVD--EAYFHL----NDIQPGYQHYACMVN 127
           L +Y  ++   IKPN +TFV VLS C H GLV+  + YF      + I+P  +HY CMV+
Sbjct: 527 LDLYSDLQSLPIKPNSITFVGVLSACCHAGLVELGKTYFESMKSDHGIEPDIKHYGCMVD 586

Query: 128 LLGWYGKLKKVEELINNMPIEPDALVWGMLLA 154
           LLG  G+L++ +E+I  MP++ D ++WGMLL+
Sbjct: 587 LLGKAGRLEEAKEMIKKMPVKADVMIWGMLLS 618

The following BLAST results are available for this feature:
BLAST of Sed0011433 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022137435.11.3e-3377.66pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Momordica ... [more]
XP_023519257.15.0e-3376.60pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Cucurbita ... [more]
XP_022923751.15.0e-3376.60pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Cucurbita ... [more]
XP_038893557.15.0e-3377.66pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Benincasa ... [more]
XP_023001341.15.0e-3376.60pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Cucurbita ... [more]
BLAST of Sed0011433 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9CA561.5e-2458.51Pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Arabidop... [more]
Q9SY021.6e-1852.27Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX... [more]
Q9ZVF42.8e-1842.50Pentatricopeptide repeat-containing protein At2g01510, mitochondrial OS=Arabidop... [more]
Q9LS728.9e-1742.70Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana OX... [more]
P0C8Q84.4e-1644.57Pentatricopeptide repeat-containing protein At5g19020, mitochondrial OS=Arabidop... [more]
BLAST of Sed0011433 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C6M86.3e-3477.66pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Momordic... [more]
A0A6J1KIC52.4e-3376.60pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Cucurbit... [more]
A0A6J1E7L22.4e-3376.60pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Cucurbit... [more]
A0A5A7T3B52.3e-3173.40Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5D3BIJ52.3e-3173.40Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
BLAST of Sed0011433 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G74600.11.1e-2558.51pentatricopeptide (PPR) repeat-containing protein [more]
AT4G02750.11.1e-1952.27Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT2G01510.12.0e-1942.50Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT3G29230.16.3e-1842.70Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT5G19020.13.1e-1744.57mitochondrial editing factor 18 [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 26..46
NoneNo IPR availablePANTHERPTHR47924PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINcoord: 67..153
NoneNo IPR availablePANTHERPTHR47924:SF4PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTICcoord: 67..153
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 28..154
e-value: 1.5E-13
score: 52.8

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0011433.1Sed0011433.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding