Sed0011064 (gene) Chayote v1

Overview


Name	Sed0011064
Type	gene
Organism	Sechium edule (Chayote v1)
Description	60S acidic ribosomal protein P0
Location	LG13: 19852300 .. 19852713 (-)
RNA-Seq Expression	Sed0011064
Synteny	Sed0011064

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCATAATTTCAAGTGCTGTGAACATCCCCACAAACATTAACAAAGGCACAGTTGAAACCATCACTTCTGTAGAGCTAATCAAGAAAGGAGACAACGTCGGCTCGTCCGAGGCCGCGCTACTCTGTAAGCTTGGGATAAGGCCCTTCTCTTACGGTCTCATTGTCGTCTCTGTCTACGACAATGGCTTTGGTTTCGACCCCGAGGTGCTTGATCTTACAGAAGATGATCTTCTTGAAAAATTCCATTCTGGGGTTTCAATCGTTGCTTCTCTCTCGCTCGTCGTGTCTTTCCCGACGCTTGCCGTGGCTCCCCGCATGCCCGTCAACGCGTACAAGAATGCTCTTGCTGTTGCTGTTGCTGTTGCCGTTGGTTGCTACTGAGTATTCATTCTCACAGGCCAAGGAAGTCAT

mRNA sequence

ATGATCATAATTTCAAGTGCTGTGAACATCCCCACAAACATTAACAAAGGCACAGTTGAAACCATCACTTCTGTAGAGCTAATCAAGAAAGGAGACAACGTCGGCTCGTCCGAGGCCGCGCTACTCTGTAAGCTTGGGATAAGGCCCTTCTCTTACGGTCTCATTGTCGTCTCTGTCTACGACAATGGCTTTGGTTTCGACCCCGAGGTGCTTGATCTTACAGAAGATGATCTTCTTGAAAAATTCCATTCTGGGGTTTCAATCGTTGCTTCTCTCTCGCTCGTCGTGTCTTTCCCGACGCTTGCCGTGGCTCCCCGCATGCCCGTCAACGCGTACAAGAATGCTCTTGCTGTTGCTGTTGCTGTTGCCGTTGGTTGCTACTGAGTATTCATTCTCACAGGCCAAGGAAGTCAT

Coding sequence (CDS)

ATGATCATAATTTCAAGTGCTGTGAACATCCCCACAAACATTAACAAAGGCACAGTTGAAACCATCACTTCTGTAGAGCTAATCAAGAAAGGAGACAACGTCGGCTCGTCCGAGGCCGCGCTACTCTGTAAGCTTGGGATAAGGCCCTTCTCTTACGGTCTCATTGTCGTCTCTGTCTACGACAATGGCTTTGGTTTCGACCCCGAGGTGCTTGATCTTACAGAAGATGATCTTCTTGAAAAATTCCATTCTGGGGTTTCAATCGTTGCTTCTCTCTCGCTCGTCGTGTCTTTCCCGACGCTTGCCGTGGCTCCCCGCATGCCCGTCAACGCGTACAAGAATGCTCTTGCTGTTGCTGTTGCTGTTGCCGTTGGTTGCTACTGA

Protein sequence

MIIISSAVNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRMPVNAYKNALAVAVAVAVGCY

Homology

[Close]

BLAST of Sed0011064 vs. NCBI nr
Match: XP_022970458.1 (60S acidic ribosomal protein P0-like [Cucurbita maxima])

HSP 1 Score: 179.1 bits (453), Expect = 2.4e-41
Identity = 97/114 (85.09%), Postives = 101/114 (88.60%), Query Frame = 0


Query: 8   VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFD 67
           +NIPT INKGTVE IT VELIKKGD VGSSEAALL KLGIRPFSYGLIVVSVYDNG  FD
Sbjct: 144 LNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSKLGIRPFSYGLIVVSVYDNGSVFD 203

Query: 68  PEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRMPVNAYKNALAVAVA 122
           PEVLDLTE+DLLEKF SGVS+VASLSL VSFPTLA AP M +NAYKN LAVAVA
Sbjct: 204 PEVLDLTEEDLLEKFLSGVSMVASLSLAVSFPTLAAAPHMLINAYKNLLAVAVA 257

[Close]

BLAST of Sed0011064 vs. NCBI nr
Match: XP_022964942.1 (60S acidic ribosomal protein P0-like [Cucurbita moschata] >XP_023520060.1 60S acidic ribosomal protein P0-like [Cucurbita pepo subsp. pepo] >KAG6583371.1 60S acidic ribosomal protein P0-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019142.1 60S acidic ribosomal protein P0-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 179.1 bits (453), Expect = 2.4e-41
Identity = 97/114 (85.09%), Postives = 101/114 (88.60%), Query Frame = 0


Query: 8   VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFD 67
           +NIPT INKGTVE IT VELIKKGD VGSSEAALL KLGIRPFSYGLIVVSVYDNG  FD
Sbjct: 144 LNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSKLGIRPFSYGLIVVSVYDNGSVFD 203

Query: 68  PEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRMPVNAYKNALAVAVA 122
           PEVLDLTE+DLLEKF SGVS+VASLSL VSFPTLA AP M +NAYKN LAVAVA
Sbjct: 204 PEVLDLTEEDLLEKFLSGVSMVASLSLAVSFPTLAAAPHMLINAYKNLLAVAVA 257

[Close]

BLAST of Sed0011064 vs. NCBI nr
Match: XP_038895318.1 (60S acidic ribosomal protein P0-like [Benincasa hispida])

HSP 1 Score: 178.7 bits (452), Expect = 3.1e-41
Identity = 96/114 (84.21%), Postives = 102/114 (89.47%), Query Frame = 0


Query: 8   VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFD 67
           +NIPT INKGTVE IT VELIKKGD VGSSEAALL KLGIRPFSYGLIV+SVYDNG  FD
Sbjct: 144 LNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSKLGIRPFSYGLIVLSVYDNGSVFD 203

Query: 68  PEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRMPVNAYKNALAVAVA 122
           PEVLDLTE+DLLEKF +GVS+VASLSL VSFPTLA AP M +NAYKNALAVAVA
Sbjct: 204 PEVLDLTEEDLLEKFLAGVSMVASLSLAVSFPTLAAAPHMLINAYKNALAVAVA 257

[Close]

BLAST of Sed0011064 vs. NCBI nr
Match: XP_008457380.1 (PREDICTED: 60S acidic ribosomal protein P0-like [Cucumis melo] >XP_016902088.1 PREDICTED: 60S acidic ribosomal protein P0-like [Cucumis melo] >TYJ97321.1 60S acidic ribosomal protein P0-like [Cucumis melo var. makuwa])

HSP 1 Score: 174.9 bits (442), Expect = 4.5e-40
Identity = 94/114 (82.46%), Postives = 100/114 (87.72%), Query Frame = 0


Query: 8   VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFD 67
           +NIPT INKGTVE IT VELIKKGD VGSSEAALL KLGIRPFSYGLIVVSVYDNG  F 
Sbjct: 144 LNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSKLGIRPFSYGLIVVSVYDNGSVFS 203

Query: 68  PEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRMPVNAYKNALAVAVA 122
           P VLDLTE+DLLEKF +GVS+VASLSL VSFPTLA AP M +NAYKNALA+AVA
Sbjct: 204 PAVLDLTEEDLLEKFLAGVSMVASLSLAVSFPTLAAAPHMLINAYKNALAIAVA 257

[Close]

BLAST of Sed0011064 vs. NCBI nr
Match: KAA0031813.1 (60S acidic ribosomal protein P0-like [Cucumis melo var. makuwa])

HSP 1 Score: 174.9 bits (442), Expect = 4.5e-40
Identity = 94/114 (82.46%), Postives = 100/114 (87.72%), Query Frame = 0


Query: 8   VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFD 67
           +NIPT INKGTVE IT VELIKKGD VGSSEAALL KLGIRPFSYGLIVVSVYDNG  F 
Sbjct: 145 LNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSKLGIRPFSYGLIVVSVYDNGSVFS 204

Query: 68  PEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRMPVNAYKNALAVAVA 122
           P VLDLTE+DLLEKF +GVS+VASLSL VSFPTLA AP M +NAYKNALA+AVA
Sbjct: 205 PAVLDLTEEDLLEKFLAGVSMVASLSLAVSFPTLAAAPHMLINAYKNALAIAVA 258

[Close]

BLAST of Sed0011064 vs. ExPASy Swiss-Prot
Match: Q42112 (60S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana OX=3702 GN=RPP0B PE=1 SV=2)

HSP 1 Score: 168.3 bits (425), Expect = 5.6e-41
Identity = 88/114 (77.19%), Postives = 98/114 (85.96%), Query Frame = 0


Query: 8   VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFD 67
           +NIPT INKGTVE IT VELIK+GD VGSSEAALL KLGIRPFSYGL+V SVYDNG  F 
Sbjct: 143 LNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFS 202

Query: 68  PEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRMPVNAYKNALAVAVA 122
           PEVLDLTED L+EKF SG+S+V SL+L VS+PTLA AP M +NAYKNALA+AVA
Sbjct: 203 PEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVA 256

[Close]

BLAST of Sed0011064 vs. ExPASy Swiss-Prot
Match: P57691 (60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana OX=3702 GN=RPP0C PE=1 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 5.6e-41
Identity = 88/114 (77.19%), Postives = 98/114 (85.96%), Query Frame = 0


Query: 8   VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFD 67
           +NIPT INKGTVE IT VELIK+GD VGSSEAALL KLGIRPFSYGL+V SVYDNG  F 
Sbjct: 143 LNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFS 202

Query: 68  PEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRMPVNAYKNALAVAVA 122
           PEVLDLTED L+EKF SG+S+V SL+L VS+PTLA AP M +NAYKNALA+AVA
Sbjct: 203 PEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVA 256

[Close]

BLAST of Sed0011064 vs. ExPASy Swiss-Prot
Match: P50346 (60S acidic ribosomal protein P0 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 7.2e-41
Identity = 88/113 (77.88%), Postives = 97/113 (85.84%), Query Frame = 0


Query: 8   VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFD 67
           +NIPT INKGTVE IT VELI+KGD VGSSEAALL KLGIRPFSYGL+V+SVYDNG  F 
Sbjct: 144 LNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFS 203

Query: 68  PEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRMPVNAYKNALAVAV 121
           PEVLDLTEDDL+ KF +GVS+V SLSL +S+PTLA AP M VNAYKN LAVAV
Sbjct: 204 PEVLDLTEDDLIGKFAAGVSMVTSLSLAISYPTLAAAPHMFVNAYKNVLAVAV 256

[Close]

BLAST of Sed0011064 vs. ExPASy Swiss-Prot
Match: O04204 (60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana OX=3702 GN=RPP0A PE=1 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 6.1e-40
Identity = 85/114 (74.56%), Postives = 99/114 (86.84%), Query Frame = 0


Query: 8   VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFD 67
           +NIPT INKGTVE IT VELIKKGD VGSSEAALL KLGIRPFSYGL+V SVYDNG  F+
Sbjct: 144 LNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVYDNGSVFN 203

Query: 68  PEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRMPVNAYKNALAVAVA 122
           PEVL+LTEDDL+EKF +GVS++ +LSL +S+PT+A AP M +NAYKN LAVA+A
Sbjct: 204 PEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAAPHMFLNAYKNVLAVALA 257

[Close]

BLAST of Sed0011064 vs. ExPASy Swiss-Prot
Match: P41095 (60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica OX=39947 GN=60SP0 PE=1 SV=3)

HSP 1 Score: 164.9 bits (416), Expect = 6.1e-40
Identity = 84/113 (74.34%), Postives = 97/113 (85.84%), Query Frame = 0


Query: 8   VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFD 67
           +NIPT INKGTVE IT VELIKKGD VGSSE+ALL KLGIRPFSYGL++ +VYD+G  F 
Sbjct: 144 LNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFS 203

Query: 68  PEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRMPVNAYKNALAVAV 121
           PEVLDLTEDDL+EKF SGVS+VAS+SL +S+PT+A AP M +N YKN LAVAV
Sbjct: 204 PEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAV 256

[Close]

BLAST of Sed0011064 vs. ExPASy TrEMBL
Match: A0A6J1I3W8 (60S acidic ribosomal protein P0 OS=Cucurbita maxima OX=3661 GN=LOC111469430 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.2e-41
Identity = 97/114 (85.09%), Postives = 101/114 (88.60%), Query Frame = 0


Query: 8   VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFD 67
           +NIPT INKGTVE IT VELIKKGD VGSSEAALL KLGIRPFSYGLIVVSVYDNG  FD
Sbjct: 144 LNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSKLGIRPFSYGLIVVSVYDNGSVFD 203

Query: 68  PEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRMPVNAYKNALAVAVA 122
           PEVLDLTE+DLLEKF SGVS+VASLSL VSFPTLA AP M +NAYKN LAVAVA
Sbjct: 204 PEVLDLTEEDLLEKFLSGVSMVASLSLAVSFPTLAAAPHMLINAYKNLLAVAVA 257

[Close]

BLAST of Sed0011064 vs. ExPASy TrEMBL
Match: A0A6J1HJ11 (60S acidic ribosomal protein P0 OS=Cucurbita moschata OX=3662 GN=LOC111464893 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.2e-41
Identity = 97/114 (85.09%), Postives = 101/114 (88.60%), Query Frame = 0


Query: 8   VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFD 67
           +NIPT INKGTVE IT VELIKKGD VGSSEAALL KLGIRPFSYGLIVVSVYDNG  FD
Sbjct: 144 LNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSKLGIRPFSYGLIVVSVYDNGSVFD 203

Query: 68  PEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRMPVNAYKNALAVAVA 122
           PEVLDLTE+DLLEKF SGVS+VASLSL VSFPTLA AP M +NAYKN LAVAVA
Sbjct: 204 PEVLDLTEEDLLEKFLSGVSMVASLSLAVSFPTLAAAPHMLINAYKNLLAVAVA 257

[Close]

BLAST of Sed0011064 vs. ExPASy TrEMBL
Match: A0A1S3C6N6 (60S acidic ribosomal protein P0 OS=Cucumis melo OX=3656 GN=LOC103497088 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.2e-40
Identity = 94/114 (82.46%), Postives = 100/114 (87.72%), Query Frame = 0


Query: 8   VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFD 67
           +NIPT INKGTVE IT VELIKKGD VGSSEAALL KLGIRPFSYGLIVVSVYDNG  F 
Sbjct: 144 LNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSKLGIRPFSYGLIVVSVYDNGSVFS 203

Query: 68  PEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRMPVNAYKNALAVAVA 122
           P VLDLTE+DLLEKF +GVS+VASLSL VSFPTLA AP M +NAYKNALA+AVA
Sbjct: 204 PAVLDLTEEDLLEKFLAGVSMVASLSLAVSFPTLAAAPHMLINAYKNALAIAVA 257

[Close]

BLAST of Sed0011064 vs. ExPASy TrEMBL
Match: A0A5D3BFC6 (60S acidic ribosomal protein P0 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001270 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.2e-40
Identity = 94/114 (82.46%), Postives = 100/114 (87.72%), Query Frame = 0


Query: 8   VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFD 67
           +NIPT INKGTVE IT VELIKKGD VGSSEAALL KLGIRPFSYGLIVVSVYDNG  F 
Sbjct: 144 LNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSKLGIRPFSYGLIVVSVYDNGSVFS 203

Query: 68  PEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRMPVNAYKNALAVAVA 122
           P VLDLTE+DLLEKF +GVS+VASLSL VSFPTLA AP M +NAYKNALA+AVA
Sbjct: 204 PAVLDLTEEDLLEKFLAGVSMVASLSLAVSFPTLAAAPHMLINAYKNALAIAVA 257

[Close]

BLAST of Sed0011064 vs. ExPASy TrEMBL
Match: A0A5A7SNJ3 (60S acidic ribosomal protein P0 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00560 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.2e-40
Identity = 94/114 (82.46%), Postives = 100/114 (87.72%), Query Frame = 0


Query: 8   VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFD 67
           +NIPT INKGTVE IT VELIKKGD VGSSEAALL KLGIRPFSYGLIVVSVYDNG  F 
Sbjct: 145 LNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSKLGIRPFSYGLIVVSVYDNGSVFS 204

Query: 68  PEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRMPVNAYKNALAVAVA 122
           P VLDLTE+DLLEKF +GVS+VASLSL VSFPTLA AP M +NAYKNALA+AVA
Sbjct: 205 PAVLDLTEEDLLEKFLAGVSMVASLSLAVSFPTLAAAPHMLINAYKNALAIAVA 258

[Close]

BLAST of Sed0011064 vs. TAIR 10
Match: AT3G09200.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 168.3 bits (425), Expect = 3.9e-42
Identity = 88/114 (77.19%), Postives = 98/114 (85.96%), Query Frame = 0


Query: 8   VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFD 67
           +NIPT INKGTVE IT VELIK+GD VGSSEAALL KLGIRPFSYGL+V SVYDNG  F 
Sbjct: 143 LNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFS 202

Query: 68  PEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRMPVNAYKNALAVAVA 122
           PEVLDLTED L+EKF SG+S+V SL+L VS+PTLA AP M +NAYKNALA+AVA
Sbjct: 203 PEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVA 256

[Close]

BLAST of Sed0011064 vs. TAIR 10
Match: AT3G11250.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 168.3 bits (425), Expect = 3.9e-42
Identity = 88/114 (77.19%), Postives = 98/114 (85.96%), Query Frame = 0


Query: 8   VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFD 67
           +NIPT INKGTVE IT VELIK+GD VGSSEAALL KLGIRPFSYGL+V SVYDNG  F 
Sbjct: 143 LNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFS 202

Query: 68  PEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRMPVNAYKNALAVAVA 122
           PEVLDLTED L+EKF SG+S+V SL+L VS+PTLA AP M +NAYKNALA+AVA
Sbjct: 203 PEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVA 256

[Close]

BLAST of Sed0011064 vs. TAIR 10
Match: AT3G09200.2 (Ribosomal protein L10 family protein )

HSP 1 Score: 168.3 bits (425), Expect = 3.9e-42
Identity = 88/114 (77.19%), Postives = 98/114 (85.96%), Query Frame = 0


Query: 8   VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFD 67
           +NIPT INKGTVE IT VELIK+GD VGSSEAALL KLGIRPFSYGL+V SVYDNG  F 
Sbjct: 110 LNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFS 169

Query: 68  PEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRMPVNAYKNALAVAVA 122
           PEVLDLTED L+EKF SG+S+V SL+L VS+PTLA AP M +NAYKNALA+AVA
Sbjct: 170 PEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVA 223

[Close]

BLAST of Sed0011064 vs. TAIR 10
Match: AT2G40010.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 164.9 bits (416), Expect = 4.4e-41
Identity = 85/114 (74.56%), Postives = 99/114 (86.84%), Query Frame = 0


Query: 8   VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFD 67
           +NIPT INKGTVE IT VELIKKGD VGSSEAALL KLGIRPFSYGL+V SVYDNG  F+
Sbjct: 144 LNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVYDNGSVFN 203

Query: 68  PEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRMPVNAYKNALAVAVA 122
           PEVL+LTEDDL+EKF +GVS++ +LSL +S+PT+A AP M +NAYKN LAVA+A
Sbjct: 204 PEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAAPHMFLNAYKNVLAVALA 257

The following BLAST results are available for this feature:

BLAST of Sed0011064 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022970458.1	2.4e-41	85.09	60S acidic ribosomal protein P0-like [Cucurbita maxima]	[more]
XP_022964942.1	2.4e-41	85.09	60S acidic ribosomal protein P0-like [Cucurbita moschata] >XP_023520060.1 60S ac...	[more]
XP_038895318.1	3.1e-41	84.21	60S acidic ribosomal protein P0-like [Benincasa hispida]	[more]
XP_008457380.1	4.5e-40	82.46	PREDICTED: 60S acidic ribosomal protein P0-like [Cucumis melo] >XP_016902088.1 P...	[more]
KAA0031813.1	4.5e-40	82.46	60S acidic ribosomal protein P0-like [Cucumis melo var. makuwa]	[more]

BLAST of Sed0011064 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q42112	5.6e-41	77.19	60S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana OX=3702 GN=RPP0B PE=1 ...	[more]
P57691	5.6e-41	77.19	60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana OX=3702 GN=RPP0C PE=1 ...	[more]
P50346	7.2e-41	77.88	60S acidic ribosomal protein P0 OS=Glycine max OX=3847 PE=2 SV=1	[more]
O04204	6.1e-40	74.56	60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana OX=3702 GN=RPP0A PE=1 ...	[more]
P41095	6.1e-40	74.34	60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica OX=39947 GN=60SP...	[more]

BLAST of Sed0011064 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I3W8	1.2e-41	85.09	60S acidic ribosomal protein P0 OS=Cucurbita maxima OX=3661 GN=LOC111469430 PE=3...	[more]
A0A6J1HJ11	1.2e-41	85.09	60S acidic ribosomal protein P0 OS=Cucurbita moschata OX=3662 GN=LOC111464893 PE...	[more]
A0A1S3C6N6	2.2e-40	82.46	60S acidic ribosomal protein P0 OS=Cucumis melo OX=3656 GN=LOC103497088 PE=3 SV=...	[more]
A0A5D3BFC6	2.2e-40	82.46	60S acidic ribosomal protein P0 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7SNJ3	2.2e-40	82.46	60S acidic ribosomal protein P0 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of Sed0011064 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09200.1	3.9e-42	77.19	Ribosomal protein L10 family protein	[more]
AT3G11250.1	3.9e-42	77.19	Ribosomal protein L10 family protein	[more]
AT3G09200.2	3.9e-42	77.19	Ribosomal protein L10 family protein	[more]
AT2G40010.1	4.4e-41	74.56	Ribosomal protein L10 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040637	60S ribosomal protein L10P, insertion domain	PFAM	PF17777	RL10P_insert	coord: 7..47 e-value: 9.0E-8 score: 32.0
IPR043164	50S ribosomal protein L10, insertion domain superfamily	GENE3D	3.90.105.20		coord: 5..51 e-value: 5.4E-14 score: 53.7
None	No IPR available	PANTHER	PTHR45699:SF13	60S ACIDIC RIBOSOMAL PROTEIN P0-LIKE	coord: 7..122
None	No IPR available	PANTHER	PTHR45699	60S ACIDIC RIBOSOMAL PROTEIN P0	coord: 7..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0011064.1	Sed0011064.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0000027	ribosomal large subunit assembly
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0070180	large ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome