Sed0010725 (gene) Chayote v1

Overview


Name	Sed0010725
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-type E3 ubiquitin transferase
Location	LG01: 66669701 .. 66670693 (-)
RNA-Seq Expression	Sed0010725
Synteny	Sed0010725

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGCAATTTCACTGAATTAATTCCATTCTTTCAAAACTAAAAAAGAGAGAGAGAGAGAGAGAAAAAAAAAACAGAAAATGCGCCCAACTCCTATAGACTCCGACGACACCGTCCGCTACCAGCCGCCGCCGCCGCCGTGCCAGGACCACCGCGCCTGCTCATGGCGGCCGTACTCCAATTCCAGAGACTTCGAAGCCAACGCCGCCGTGGTCGTCATCATCCTCCTCTGCGGCCTAATCTGTGCTCTCGCTCTCAACACCGCCATCCGCTGCTTCCTCCGCGGCGGCGGCGGCGACGATCAGGAGGAGGAGGAGGAGATTCAGGAGGAAACGAAGCCATCGGCGGCGGCGCTGGTGGAGAAATTTAAGATGGCGCCGGCGGTGGTGTTCACGGCGGAGATGAAGCCGAAGCTCGCCGGCGCGGAGGCGGAGTGCACGATTTGCTTGAGTGAGTTCTCGGAAGGGGAAGAGATTCGAGTGTTGGAGATCTGCAAGCACGGATTTCACGCTCACTGTATCCAAACTTGGTTGATTTTGCATTCTTCTTGTCCCACTTGCCGCCGTACCTACCTCCCTTCATCGCCGTCCTCCTCCGTGCGCGGCTGCGACGGCGACGGCGACCCCTGAAAATAGATTAGATTAGTTAGTATTACTGGAATTTCTCCCCACAGCCGCCGTCGTATGCTGTTTGGCAGCAGTTCGAATCGGGCGTTTTATTTGTTTTGTTTTTTTTAAATTACAATTACTTCGTCTGTGGTTTTTTCTGTGGTATCTTTTGGGTGACTTTCCGAATTTACCAAATTTCTGTAGTGTAATTCGGTTTGAGAAATGATCTTAAATTTTCTGGGTTTTAAAAAATGATGTTAAAATTTTAATGGAAACTTACGATGACACAAATCAGGGTAAATTGTCTAAAGGGGTCAATTTGATAAACTATTTGTCAAAATGGCTCCCTTATGAAACTATTTTTCAAAATGGGTTGTGGCGTCTCTTG

mRNA sequence

CTGCAATTTCACTGAATTAATTCCATTCTTTCAAAACTAAAAAAGAGAGAGAGAGAGAGAGAAAAAAAAAACAGAAAATGCGCCCAACTCCTATAGACTCCGACGACACCGTCCGCTACCAGCCGCCGCCGCCGCCGTGCCAGGACCACCGCGCCTGCTCATGGCGGCCGTACTCCAATTCCAGAGACTTCGAAGCCAACGCCGCCGTGGTCGTCATCATCCTCCTCTGCGGCCTAATCTGTGCTCTCGCTCTCAACACCGCCATCCGCTGCTTCCTCCGCGGCGGCGGCGGCGACGATCAGGAGGAGGAGGAGGAGATTCAGGAGGAAACGAAGCCATCGGCGGCGGCGCTGGTGGAGAAATTTAAGATGGCGCCGGCGGTGGTGTTCACGGCGGAGATGAAGCCGAAGCTCGCCGGCGCGGAGGCGGAGTGCACGATTTGCTTGAGTGAGTTCTCGGAAGGGGAAGAGATTCGAGTGTTGGAGATCTGCAAGCACGGATTTCACGCTCACTGTATCCAAACTTGGTTGATTTTGCATTCTTCTTGTCCCACTTGCCGCCGTACCTACCTCCCTTCATCGCCGTCCTCCTCCGTGCGCGGCTGCGACGGCGACGGCGACCCCTGAAAATAGATTAGATTAGTTAGTATTACTGGAATTTCTCCCCACAGCCGCCGTCGTATGCTGTTTGGCAGCAGTTCGAATCGGGCGTTTTATTTGTTTTGTTTTTTTTAAATTACAATTACTTCGTCTGTGGTTTTTTCTGTGGTATCTTTTGGGTGACTTTCCGAATTTACCAAATTTCTGTAGTGTAATTCGGTTTGAGAAATGATCTTAAATTTTCTGGGTTTTAAAAAATGATGTTAAAATTTTAATGGAAACTTACGATGACACAAATCAGGGTAAATTGTCTAAAGGGGTCAATTTGATAAACTATTTGTCAAAATGGCTCCCTTATGAAACTATTTTTCAAAATGGGTTGTGGCGTCTCTTG

Coding sequence (CDS)

ATGCGCCCAACTCCTATAGACTCCGACGACACCGTCCGCTACCAGCCGCCGCCGCCGCCGTGCCAGGACCACCGCGCCTGCTCATGGCGGCCGTACTCCAATTCCAGAGACTTCGAAGCCAACGCCGCCGTGGTCGTCATCATCCTCCTCTGCGGCCTAATCTGTGCTCTCGCTCTCAACACCGCCATCCGCTGCTTCCTCCGCGGCGGCGGCGGCGACGATCAGGAGGAGGAGGAGGAGATTCAGGAGGAAACGAAGCCATCGGCGGCGGCGCTGGTGGAGAAATTTAAGATGGCGCCGGCGGTGGTGTTCACGGCGGAGATGAAGCCGAAGCTCGCCGGCGCGGAGGCGGAGTGCACGATTTGCTTGAGTGAGTTCTCGGAAGGGGAAGAGATTCGAGTGTTGGAGATCTGCAAGCACGGATTTCACGCTCACTGTATCCAAACTTGGTTGATTTTGCATTCTTCTTGTCCCACTTGCCGCCGTACCTACCTCCCTTCATCGCCGTCCTCCTCCGTGCGCGGCTGCGACGGCGACGGCGACCCCTGA

Protein sequence

MRPTPIDSDDTVRYQPPPPPCQDHRACSWRPYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRGGGGDDQEEEEEIQEETKPSAAALVEKFKMAPAVVFTAEMKPKLAGAEAECTICLSEFSEGEEIRVLEICKHGFHAHCIQTWLILHSSCPTCRRTYLPSSPSSSVRGCDGDGDP

Homology

[Close]

BLAST of Sed0010725 vs. NCBI nr
Match: XP_008437481.1 (PREDICTED: RING-H2 finger protein ATL79-like [Cucumis melo] >KAA0042624.1 RING-H2 finger protein ATL79-like [Cucumis melo var. makuwa] >TYK06025.1 RING-H2 finger protein ATL79-like [Cucumis melo var. makuwa])

HSP 1 Score: 290.0 bits (741), Expect = 1.4e-74
Identity = 148/187 (79.14%), Postives = 162/187 (86.63%), Query Frame = 0


Query: 1   MRPTPIDSDDTVRYQPPP-PPCQDHRACSWRPYSNSRDFEANAAVVVIILLCGLICALAL 60
           MRPTP+D+D+TVR+QPPP PPC D RAC+WRPYSNSRDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADETVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRGGGGDDQE----EEEEIQEETKPSAAALVEKFKMAPAVVFTAEMKPKLAGA 120
           NTAIRCFLR  G  D +     +EE+QEETKP+   LVEK KMAPA+VF+AEMKPKLAGA
Sbjct: 61  NTAIRCFLRRRGTSDDDSNDSRQEELQEETKPT---LVEKLKMAPALVFSAEMKPKLAGA 120

Query: 121 EAECTICLSEFSEGEEIRVLEICKHGFHAHCIQTWLILHSSCPTCRRTYLPSSPSSSVRG 180
           EAECTICL+EFSEGEEIRVL ICKHGFH  CIQTWLI HSSCPTCRR+YLP SPSSSV G
Sbjct: 121 EAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSVSG 180

Query: 181 CDGDGDP 183
             GDG+P
Sbjct: 181 --GDGNP 182

[Close]

BLAST of Sed0010725 vs. NCBI nr
Match: XP_038875287.1 (RING-H2 finger protein ATL79-like [Benincasa hispida])

HSP 1 Score: 288.5 bits (737), Expect = 4.0e-74
Identity = 145/187 (77.54%), Postives = 160/187 (85.56%), Query Frame = 0


Query: 1   MRPTPIDSDDTVRYQPPP-PPCQDHRACSWRPYSNSRDFEANAAVVVIILLCGLICALAL 60
           MRPTP+D+DDTV +QPPP PPC D RAC+WRPYSNSRDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADDTVAFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRGGGGDDQE----EEEEIQEETKPSAAALVEKFKMAPAVVFTAEMKPKLAGA 120
           NTAIRCFLR  G  D +     +EE+Q+ETKP+   LV+K KMAPA+VF+AE KPKLAGA
Sbjct: 61  NTAIRCFLRRRGSADDDPSDSRQEELQDETKPT---LVDKLKMAPALVFSAETKPKLAGA 120

Query: 121 EAECTICLSEFSEGEEIRVLEICKHGFHAHCIQTWLILHSSCPTCRRTYLPSSPSSSVRG 180
           EAECTICL+EF EGEEIRVL ICKHGFH  CIQTWLILHSSCPTCRR+YLP SP SSV G
Sbjct: 121 EAECTICLTEFLEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPPSSVSG 180

Query: 181 CDGDGDP 183
            DGDG+P
Sbjct: 181 GDGDGNP 184

[Close]

BLAST of Sed0010725 vs. NCBI nr
Match: XP_022928967.1 (RING-H2 finger protein ATL79-like [Cucurbita moschata] >KAG6579615.1 RING-H2 finger protein ATL79, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 286.6 bits (732), Expect = 1.5e-73
Identity = 143/188 (76.06%), Postives = 161/188 (85.64%), Query Frame = 0


Query: 1   MRPTPIDSDDTVRYQ--PPPPPCQDHRACSWRPYSNSRDFEANAAVVVIILLCGLICALA 60
           MRPTP+D+DDTV +Q  PPPPPC D RAC+WRPYSNSRDFEANAAVVVIILLCGLIC+LA
Sbjct: 1   MRPTPLDADDTVSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60

Query: 61  LNTAIRCFLRGGGGDDQE----EEEEIQEETKPSAAALVEKFKMAPAVVFTAEMKPKLAG 120
           LNTAIRCFLR  G  D+      +EE+++ETKP+   LV+K KMAPA+VF+AE+KPKLAG
Sbjct: 61  LNTAIRCFLRRRGDADENPSDTRQEELRDETKPT---LVDKLKMAPALVFSAEIKPKLAG 120

Query: 121 AEAECTICLSEFSEGEEIRVLEICKHGFHAHCIQTWLILHSSCPTCRRTYLPSSPSSSVR 180
           AEAECTICL+EFSEGEEIRVL ICKHGFH  CIQTWLILHSSCPTCR +YLP SPSS+  
Sbjct: 121 AEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAH 180

Query: 181 GCDGDGDP 183
           G DGDGDP
Sbjct: 181 GGDGDGDP 185

[Close]

BLAST of Sed0010725 vs. NCBI nr
Match: XP_004145965.1 (RING-H2 finger protein ATL79 [Cucumis sativus] >KGN49952.1 hypothetical protein Csa_000591 [Cucumis sativus])

HSP 1 Score: 283.9 bits (725), Expect = 9.9e-73
Identity = 144/187 (77.01%), Postives = 160/187 (85.56%), Query Frame = 0


Query: 1   MRPTPIDSDDTVRYQPPP-PPCQDHRACSWRPYSNSRDFEANAAVVVIILLCGLICALAL 60
           MRPTP+D+DDTVR+QPPP PPC D RAC+WRPYS+SRDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADDTVRFQPPPSPPCHDLRACTWRPYSSSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRGGGGDDQE----EEEEIQEETKPSAAALVEKFKMAPAVVFTAEMKPKLAGA 120
           NTAIRCFLR  G  D +     +EE+ EETKP+   L++K KMAPA+VF+AEMKPKLAGA
Sbjct: 61  NTAIRCFLRRRGTSDDDSSDSRQEELPEETKPT---LMDKLKMAPALVFSAEMKPKLAGA 120

Query: 121 EAECTICLSEFSEGEEIRVLEICKHGFHAHCIQTWLILHSSCPTCRRTYLPSSPSSSVRG 180
           EAECTICL+EFSEGEEIRVL ICKHGFH  CIQTWLI HSSCPTCRR+YLP SPSSS  G
Sbjct: 121 EAECTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSASG 180

Query: 181 CDGDGDP 183
             GDG+P
Sbjct: 181 --GDGNP 182

[Close]

BLAST of Sed0010725 vs. NCBI nr
Match: KAG7017072.1 (RING-H2 finger protein ATL79, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 283.9 bits (725), Expect = 9.9e-73
Identity = 142/187 (75.94%), Postives = 160/187 (85.56%), Query Frame = 0


Query: 1   MRPTPIDSDDTVRYQ--PPPPPCQDHRACSWRPYSNSRDFEANAAVVVIILLCGLICALA 60
           MRPTP+D+DDTV +Q  PPPPPC D RAC+WRPYSNSRDFEANAAVVVIILLCGLIC+LA
Sbjct: 1   MRPTPLDADDTVSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60

Query: 61  LNTAIRCFLRGGGGDDQE----EEEEIQEETKPSAAALVEKFKMAPAVVFTAEMKPKLAG 120
           LNTAIRCFLR  G  D+      +EE+++ETKP+   LV+K KMAPA+VF+AE+KPKLAG
Sbjct: 61  LNTAIRCFLRRRGDADENPSDTRQEELRDETKPT---LVDKLKMAPALVFSAEIKPKLAG 120

Query: 121 AEAECTICLSEFSEGEEIRVLEICKHGFHAHCIQTWLILHSSCPTCRRTYLPSSPSSSVR 180
           AEAECTICL+EFSEGEEIRVL ICKHGFH  CIQTWLILHSSCPTCR +YLP SPSS+  
Sbjct: 121 AEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAH 180

Query: 181 GCDGDGD 182
           G DGDGD
Sbjct: 181 GGDGDGD 184

[Close]

BLAST of Sed0010725 vs. ExPASy Swiss-Prot
Match: Q9FGJ6 (RING-H2 finger protein ATL79 OS=Arabidopsis thaliana OX=3702 GN=ATL79 PE=2 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.6e-33
Identity = 75/158 (47.47%), Postives = 99/158 (62.66%), Query Frame = 0


Query: 19  PPCQDHRACSWRPYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRGGGGDDQEEE 78
           P C  H  C W+PYSNS DF ANA+V++I+++  LICAL+L  AIRCFLR          
Sbjct: 18  PTCNSH-TCRWKPYSNSTDFTANASVLLILVISALICALSLYAAIRCFLR--------PT 77

Query: 79  EEIQEETKPSAAALVEKFKMAPAVVFTAEMKPKLAGAEAECTICLSEFSEGEEIRVLEIC 138
            E +++ KP   A        P +V+++++  +LAGAEAEC ICLSEF +GE I+VLE C
Sbjct: 78  LETEDDHKPDPEAAASSTPTTPTLVYSSDL--ELAGAEAECAICLSEFEQGESIQVLEKC 137

Query: 139 KHGFHAHCIQTWLILHSSCPTCRRTYL---PSSPSSSV 174
           +HGFH  CI  WL   SSCPTCR +       +PSS +
Sbjct: 138 QHGFHVKCIHKWLSTRSSCPTCRTSIFSQHSETPSSHI 164

[Close]

BLAST of Sed0010725 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.7e-20
Identity = 57/147 (38.78%), Postives = 82/147 (55.78%), Query Frame = 0


Query: 34  NSRDFEANAAVVVIILLCGLICALALNTAIRCFLRGGGGDDQEEEEEIQEETKPSAAALV 93
           N    + +  +++  LLC LICAL +N+ +RC LR        E+     +T  + A  +
Sbjct: 33  NIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNED---PVDTNANVAKGI 92

Query: 94  EK--FKMAPAVVFTAEMKPKLAGAEAECTICLSEFSEGEEIRVLEICKHGFHAHCIQTWL 153
           +K   K+ P   ++ E+K K      EC ICL +F EGE +RVL  C HGFH  CI TWL
Sbjct: 93  KKRALKVIPVDSYSPELKMK----ATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWL 152

Query: 154 ILHSSCPTCRRTYLP-SSPSSSVRGCD 178
           + HSSCPTCR++ L   +P++  R  D
Sbjct: 153 LSHSSCPTCRQSLLEHQTPANGSRRGD 172

[Close]

BLAST of Sed0010725 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.7e-20
Identity = 52/131 (39.69%), Postives = 70/131 (53.44%), Query Frame = 0


Query: 31  PYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRGGGGDDQEEEEEIQEETKPSAA 90
           PY    +F+AN  +V+ +LLC L+C+L LN+ IRC LR       E   +       +  
Sbjct: 45  PYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSEAGGDNYPVRLTNTG 104

Query: 91  ALVEKFKMAPAVVFTAEMKPKLAGAEAECTICLSEFSEGEEIRVLEICKHGFHAHCIQTW 150
              +  K    V ++ E+   L G + EC ICLSEF   E +++L  C HGFH  CI  W
Sbjct: 105 VKRKALKSFQTVSYSTEL--NLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKW 164

Query: 151 LILHSSCPTCR 162
           L  HSSCPTCR
Sbjct: 165 LSSHSSCPTCR 173

[Close]

BLAST of Sed0010725 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.5e-20
Identity = 57/144 (39.58%), Postives = 76/144 (52.78%), Query Frame = 0


Query: 34  NSRDFEANAAVVVIILLCGLICALALNTAIRCFL---RGGGGDDQEEEEEIQEETKPSAA 93
           N   F+ N  +++  LLC LICAL+LN+A+RC L   R    DDQ              A
Sbjct: 25  NDTYFDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNANANLGRLA 84

Query: 94  ALV----EKFKMAPAVVFTAEMKPKLAGAEAECTICLSEFSEGEEIRVLEICKHGFHAHC 153
           A      +  K  P  ++ + +    A    EC ICL +F +GE++RVL  C HGFH  C
Sbjct: 85  AATGLKKQALKQIPVGLYGSGIIDMKA---TECLICLGDFEDGEKVRVLPKCNHGFHVRC 144

Query: 154 IQTWLILHSSCPTCRRTYLPSSPS 171
           I TWL+  SSCPTCR++ L   PS
Sbjct: 145 IDTWLLSRSSCPTCRQSLLLEQPS 165

[Close]

BLAST of Sed0010725 vs. ExPASy Swiss-Prot
Match: Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.3e-19
Identity = 52/134 (38.81%), Postives = 73/134 (54.48%), Query Frame = 0


Query: 32  YSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRGGGGDDQEEEEEIQEETKPSAAA 91
           Y+   +F+AN  +++  LLC LI AL LN+ +RC +R G G           +       
Sbjct: 24  YTRDMNFDANMVIILAALLCALILALGLNSILRCAMRCGFGLSSSAAAGTVADRAGLKKR 83

Query: 92  LVEKFKMAPAVVFTAEMKPKLAGAEAECTICLSEFSEGEEIRVLEICKHGFHAHCIQTWL 151
            ++KF +A     + E+K     A  EC ICL EF++GE +RVL  C H FH  CI TWL
Sbjct: 84  ELKKFPVAE--YGSGEVKI----AATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWL 143

Query: 152 ILHSSCPTCRRTYL 166
           + HSSCP CR + +
Sbjct: 144 VSHSSCPNCRHSLI 151

[Close]

BLAST of Sed0010725 vs. ExPASy TrEMBL
Match: A0A5D3C3S3 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001240 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 6.7e-75
Identity = 148/187 (79.14%), Postives = 162/187 (86.63%), Query Frame = 0


Query: 1   MRPTPIDSDDTVRYQPPP-PPCQDHRACSWRPYSNSRDFEANAAVVVIILLCGLICALAL 60
           MRPTP+D+D+TVR+QPPP PPC D RAC+WRPYSNSRDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADETVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRGGGGDDQE----EEEEIQEETKPSAAALVEKFKMAPAVVFTAEMKPKLAGA 120
           NTAIRCFLR  G  D +     +EE+QEETKP+   LVEK KMAPA+VF+AEMKPKLAGA
Sbjct: 61  NTAIRCFLRRRGTSDDDSNDSRQEELQEETKPT---LVEKLKMAPALVFSAEMKPKLAGA 120

Query: 121 EAECTICLSEFSEGEEIRVLEICKHGFHAHCIQTWLILHSSCPTCRRTYLPSSPSSSVRG 180
           EAECTICL+EFSEGEEIRVL ICKHGFH  CIQTWLI HSSCPTCRR+YLP SPSSSV G
Sbjct: 121 EAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSVSG 180

Query: 181 CDGDGDP 183
             GDG+P
Sbjct: 181 --GDGNP 182

[Close]

BLAST of Sed0010725 vs. ExPASy TrEMBL
Match: A0A1S3AU49 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103482889 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 6.7e-75
Identity = 148/187 (79.14%), Postives = 162/187 (86.63%), Query Frame = 0


Query: 1   MRPTPIDSDDTVRYQPPP-PPCQDHRACSWRPYSNSRDFEANAAVVVIILLCGLICALAL 60
           MRPTP+D+D+TVR+QPPP PPC D RAC+WRPYSNSRDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADETVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRGGGGDDQE----EEEEIQEETKPSAAALVEKFKMAPAVVFTAEMKPKLAGA 120
           NTAIRCFLR  G  D +     +EE+QEETKP+   LVEK KMAPA+VF+AEMKPKLAGA
Sbjct: 61  NTAIRCFLRRRGTSDDDSNDSRQEELQEETKPT---LVEKLKMAPALVFSAEMKPKLAGA 120

Query: 121 EAECTICLSEFSEGEEIRVLEICKHGFHAHCIQTWLILHSSCPTCRRTYLPSSPSSSVRG 180
           EAECTICL+EFSEGEEIRVL ICKHGFH  CIQTWLI HSSCPTCRR+YLP SPSSSV G
Sbjct: 121 EAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSVSG 180

Query: 181 CDGDGDP 183
             GDG+P
Sbjct: 181 --GDGNP 182

[Close]

BLAST of Sed0010725 vs. ExPASy TrEMBL
Match: A0A6J1ELF7 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111435709 PE=3 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 7.4e-74
Identity = 143/188 (76.06%), Postives = 161/188 (85.64%), Query Frame = 0


Query: 1   MRPTPIDSDDTVRYQ--PPPPPCQDHRACSWRPYSNSRDFEANAAVVVIILLCGLICALA 60
           MRPTP+D+DDTV +Q  PPPPPC D RAC+WRPYSNSRDFEANAAVVVIILLCGLIC+LA
Sbjct: 1   MRPTPLDADDTVSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60

Query: 61  LNTAIRCFLRGGGGDDQE----EEEEIQEETKPSAAALVEKFKMAPAVVFTAEMKPKLAG 120
           LNTAIRCFLR  G  D+      +EE+++ETKP+   LV+K KMAPA+VF+AE+KPKLAG
Sbjct: 61  LNTAIRCFLRRRGDADENPSDTRQEELRDETKPT---LVDKLKMAPALVFSAEIKPKLAG 120

Query: 121 AEAECTICLSEFSEGEEIRVLEICKHGFHAHCIQTWLILHSSCPTCRRTYLPSSPSSSVR 180
           AEAECTICL+EFSEGEEIRVL ICKHGFH  CIQTWLILHSSCPTCR +YLP SPSS+  
Sbjct: 121 AEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAH 180

Query: 181 GCDGDGDP 183
           G DGDGDP
Sbjct: 181 GGDGDGDP 185

[Close]

BLAST of Sed0010725 vs. ExPASy TrEMBL
Match: A0A0A0KNJ7 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_5G146260 PE=3 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 4.8e-73
Identity = 144/187 (77.01%), Postives = 160/187 (85.56%), Query Frame = 0


Query: 1   MRPTPIDSDDTVRYQPPP-PPCQDHRACSWRPYSNSRDFEANAAVVVIILLCGLICALAL 60
           MRPTP+D+DDTVR+QPPP PPC D RAC+WRPYS+SRDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADDTVRFQPPPSPPCHDLRACTWRPYSSSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRGGGGDDQE----EEEEIQEETKPSAAALVEKFKMAPAVVFTAEMKPKLAGA 120
           NTAIRCFLR  G  D +     +EE+ EETKP+   L++K KMAPA+VF+AEMKPKLAGA
Sbjct: 61  NTAIRCFLRRRGTSDDDSSDSRQEELPEETKPT---LMDKLKMAPALVFSAEMKPKLAGA 120

Query: 121 EAECTICLSEFSEGEEIRVLEICKHGFHAHCIQTWLILHSSCPTCRRTYLPSSPSSSVRG 180
           EAECTICL+EFSEGEEIRVL ICKHGFH  CIQTWLI HSSCPTCRR+YLP SPSSS  G
Sbjct: 121 EAECTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSASG 180

Query: 181 CDGDGDP 183
             GDG+P
Sbjct: 181 --GDGNP 182

[Close]

BLAST of Sed0010725 vs. ExPASy TrEMBL
Match: A0A6J1DZ01 (RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC111025919 PE=3 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 9.0e-72
Identity = 141/192 (73.44%), Postives = 157/192 (81.77%), Query Frame = 0


Query: 1   MRPTPIDSDDTVRYQ-PPPPPCQDHRACSWRPYSNSRDFEANAAVVVIILLCGLICALAL 60
           MRPTP+D+DDTVR+  PPPPPC D RACSWRPYSNS+DFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADDTVRFHAPPPPPCHDFRACSWRPYSNSKDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLR----------GGGGDDQEEEEEIQEETKPSAAALVEKFKMAPAVVFTAEMK 120
           NTAIRCFLR          G G     +++E+++E KP    L++  KMAPA+VF+AEMK
Sbjct: 61  NTAIRCFLRRDGRRDDPSDGNGLSQAGQQQELRDEPKP---ILLDTLKMAPALVFSAEMK 120

Query: 121 PKLAGAEAECTICLSEFSEGEEIRVLEICKHGFHAHCIQTWLILHSSCPTCRRTYLPSSP 180
           PKLAGAEAECTICL+EFSEGEEIRVL ICKHGFH  CIQTWLILHSSCPTCRR+YLP SP
Sbjct: 121 PKLAGAEAECTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSP 180

Query: 181 SSSVRGCDGDGD 182
           SSS    DGDGD
Sbjct: 181 SSSEHSGDGDGD 189

[Close]

BLAST of Sed0010725 vs. TAIR 10
Match: AT5G47610.1 (RING/U-box superfamily protein )

HSP 1 Score: 142.9 bits (359), Expect = 2.5e-34
Identity = 75/158 (47.47%), Postives = 99/158 (62.66%), Query Frame = 0


Query: 19  PPCQDHRACSWRPYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRGGGGDDQEEE 78
           P C  H  C W+PYSNS DF ANA+V++I+++  LICAL+L  AIRCFLR          
Sbjct: 18  PTCNSH-TCRWKPYSNSTDFTANASVLLILVISALICALSLYAAIRCFLR--------PT 77

Query: 79  EEIQEETKPSAAALVEKFKMAPAVVFTAEMKPKLAGAEAECTICLSEFSEGEEIRVLEIC 138
            E +++ KP   A        P +V+++++  +LAGAEAEC ICLSEF +GE I+VLE C
Sbjct: 78  LETEDDHKPDPEAAASSTPTTPTLVYSSDL--ELAGAEAECAICLSEFEQGESIQVLEKC 137

Query: 139 KHGFHAHCIQTWLILHSSCPTCRRTYL---PSSPSSSV 174
           +HGFH  CI  WL   SSCPTCR +       +PSS +
Sbjct: 138 QHGFHVKCIHKWLSTRSSCPTCRTSIFSQHSETPSSHI 164

[Close]

BLAST of Sed0010725 vs. TAIR 10
Match: AT4G17245.1 (RING/U-box superfamily protein )

HSP 1 Score: 130.6 bits (327), Expect = 1.3e-30
Identity = 71/150 (47.33%), Postives = 88/150 (58.67%), Query Frame = 0


Query: 21  CQDHRACSWRPYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRGGGGDDQEEEEE 80
           C  H +C W+PYS+S DF ANA +++IIL C  IC L+L+ AIRC LR            
Sbjct: 17  CTSH-SCGWKPYSHSNDFAANAFLLLIILFCSFICVLSLHAAIRCCLR----------PV 76

Query: 81  IQEETKPSAAALVEKFKMAPAVVFTAEMKPKLAGAEAECTICLSEFSEGEEIRVLEICKH 140
           +Q   KP            P +V++  +   LAG EAEC ICLSEF +G+ +RVLE CKH
Sbjct: 77  LQHVPKPDPDLEATHPDAPPTLVYSPGL--NLAGNEAECIICLSEFQDGDTLRVLERCKH 136

Query: 141 GFHAHCIQTWL-ILHSSCPTCRRTYLPSSP 170
           GFH +CIQ WL   HSSCPTCR     S P
Sbjct: 137 GFHVYCIQKWLSSSHSSCPTCRTNIFSSPP 153

[Close]

BLAST of Sed0010725 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 100.1 bits (248), Expect = 1.9e-21
Identity = 52/131 (39.69%), Postives = 70/131 (53.44%), Query Frame = 0


Query: 31  PYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRGGGGDDQEEEEEIQEETKPSAA 90
           PY    +F+AN  +V+ +LLC L+C+L LN+ IRC LR       E   +       +  
Sbjct: 45  PYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSEAGGDNYPVRLTNTG 104

Query: 91  ALVEKFKMAPAVVFTAEMKPKLAGAEAECTICLSEFSEGEEIRVLEICKHGFHAHCIQTW 150
              +  K    V ++ E+   L G + EC ICLSEF   E +++L  C HGFH  CI  W
Sbjct: 105 VKRKALKSFQTVSYSTEL--NLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKW 164

Query: 151 LILHSSCPTCR 162
           L  HSSCPTCR
Sbjct: 165 LSSHSSCPTCR 173

[Close]

BLAST of Sed0010725 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 100.1 bits (248), Expect = 1.9e-21
Identity = 57/147 (38.78%), Postives = 82/147 (55.78%), Query Frame = 0


Query: 34  NSRDFEANAAVVVIILLCGLICALALNTAIRCFLRGGGGDDQEEEEEIQEETKPSAAALV 93
           N    + +  +++  LLC LICAL +N+ +RC LR        E+     +T  + A  +
Sbjct: 33  NIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNED---PVDTNANVAKGI 92

Query: 94  EK--FKMAPAVVFTAEMKPKLAGAEAECTICLSEFSEGEEIRVLEICKHGFHAHCIQTWL 153
           +K   K+ P   ++ E+K K      EC ICL +F EGE +RVL  C HGFH  CI TWL
Sbjct: 93  KKRALKVIPVDSYSPELKMK----ATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWL 152

Query: 154 ILHSSCPTCRRTYLP-SSPSSSVRGCD 178
           + HSSCPTCR++ L   +P++  R  D
Sbjct: 153 LSHSSCPTCRQSLLEHQTPANGSRRGD 172

[Close]

BLAST of Sed0010725 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein )

HSP 1 Score: 99.8 bits (247), Expect = 2.5e-21
Identity = 57/144 (39.58%), Postives = 76/144 (52.78%), Query Frame = 0


Query: 34  NSRDFEANAAVVVIILLCGLICALALNTAIRCFL---RGGGGDDQEEEEEIQEETKPSAA 93
           N   F+ N  +++  LLC LICAL+LN+A+RC L   R    DDQ              A
Sbjct: 25  NDTYFDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNANANLGRLA 84

Query: 94  ALV----EKFKMAPAVVFTAEMKPKLAGAEAECTICLSEFSEGEEIRVLEICKHGFHAHC 153
           A      +  K  P  ++ + +    A    EC ICL +F +GE++RVL  C HGFH  C
Sbjct: 85  AATGLKKQALKQIPVGLYGSGIIDMKA---TECLICLGDFEDGEKVRVLPKCNHGFHVRC 144

Query: 154 IQTWLILHSSCPTCRRTYLPSSPS 171
           I TWL+  SSCPTCR++ L   PS
Sbjct: 145 IDTWLLSRSSCPTCRQSLLLEQPS 165

The following BLAST results are available for this feature:

BLAST of Sed0010725 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008437481.1	1.4e-74	79.14	PREDICTED: RING-H2 finger protein ATL79-like [Cucumis melo] >KAA0042624.1 RING-H...	[more]
XP_038875287.1	4.0e-74	77.54	RING-H2 finger protein ATL79-like [Benincasa hispida]	[more]
XP_022928967.1	1.5e-73	76.06	RING-H2 finger protein ATL79-like [Cucurbita moschata] >KAG6579615.1 RING-H2 fin...	[more]
XP_004145965.1	9.9e-73	77.01	RING-H2 finger protein ATL79 [Cucumis sativus] >KGN49952.1 hypothetical protein ...	[more]
KAG7017072.1	9.9e-73	75.94	RING-H2 finger protein ATL79, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]

BLAST of Sed0010725 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FGJ6	3.6e-33	47.47	RING-H2 finger protein ATL79 OS=Arabidopsis thaliana OX=3702 GN=ATL79 PE=2 SV=1	[more]
Q9FLC6	2.7e-20	38.78	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]
Q6NQG7	2.7e-20	39.69	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1	[more]
Q9SG96	3.5e-20	39.58	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1	[more]
Q9LZV8	2.3e-19	38.81	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1	[more]

BLAST of Sed0010725 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C3S3	6.7e-75	79.14	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3AU49	6.7e-75	79.14	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103482889 PE=3 ...	[more]
A0A6J1ELF7	7.4e-74	76.06	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111435709...	[more]
A0A0A0KNJ7	4.8e-73	77.01	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_5G146260 PE...	[more]
A0A6J1DZ01	9.0e-72	73.44	RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC11102591...	[more]

BLAST of Sed0010725 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G47610.1	2.5e-34	47.47	RING/U-box superfamily protein	[more]
AT4G17245.1	1.3e-30	47.33	RING/U-box superfamily protein	[more]
AT1G49230.1	1.9e-21	39.69	RING/U-box superfamily protein	[more]
AT5G05280.1	1.9e-21	38.78	RING/U-box superfamily protein	[more]
AT3G10910.1	2.5e-21	39.58	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 119..160 e-value: 2.9E-6 score: 36.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 118..161 e-value: 1.0E-12 score: 48.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 119..161 score: 12.076194
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 73..165 e-value: 4.9E-20 score: 73.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR46905:SF1	RING-H2 FINGER PROTEIN ATL79-LIKE	coord: 20..173
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 109..167
IPR044602	RING-H2 finger protein ATL10/ATL75-79	PANTHER	PTHR46905	RING-H2 FINGER PROTEIN ATL78	coord: 20..173

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010725.1	Sed0010725.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016740	transferase activity