Sed0010718 (gene) Chayote v1

Overview


Name	Sed0010718
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG07: 8348158 .. 8349182 (+)
RNA-Seq Expression	Sed0010718
Synteny	Sed0010718

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCCTCAAGATTTGTGTTCTGTTCTTTGCTTTGCTTCTCATGGCCTCTGCTGTTTCTGCCACCACCAAAACTCCTTTCATCCACAAACCTCCCATTCGTAAGTTTTTTTTTTTTTTTTCATTTATTTAAGATTCTTTTAGGAAAAATTGGGGACTACATATCTACATAGTGAGTAATTCTTTCAAATAAATGAGATTAAATACCGATCCTGATTTTCAGGATCCAACCCATAACTGTAATTTTGAATTGCATTACTACCAACCAATGAAACCAACACACTATCAACTTTTTTTAGTACTTAATTTTTTTTTCAAGATTATTAAAAGTTATAAAAAGTGATGGAGGAGAATGTGTTATGAGGTGTTTTGATGAGAAATTAGTTTGAGGAGTTCTTTTTTAATAGTTAAAAATTGAGAGTTGTAGCAAAAAATGGATGTGTGTGTTTTTTTTATTGTTATTTTTTTTATAAAATTAGAGTGAAAACCTTATTTGAATATAAATTTAAAATCAATAATTATTTTGAGTGTTTAAAAAAAGAATAATAAAATGAGTGATTAAAAATGAATTATTTTTTTTGCTTTCTCAAAAAAAAAAAAGAATTATTTTGATAAATTAAAAATGATATAAGAAATGACTGGTTTGGAAATGAAGAGTTCAATTAAATAGTATAAATGAATGGTTAGAAATAAAAAGTTATTTTTAATAATAAAAATGATAATCATAAGATGACACGTTAAAAAAGTTCATATTAAACGTTCATATTAGAATTTCCAATTAAGATCCTACTTGATCCTTAAAATCATCATAAATTAAATTCATCATCTTTAATATTCTAAGATTTTTTTTGACCACGAGATCTCTATAATGGTTGTAAGAACATGGTTTTCATTTAAAATTATTTCTTTTATTTGATTTTTGTATGGTTGTCAGGCAGAATGGGTATGAAGTACAAAAATGCACCAAAAGCCCCAAAGAGCCCAATTTTTGGTGATGCCCCATGGAGGGGAGGTTATACTTAG

mRNA sequence

ATGGCGTCCCTCAAGATTTGTGTTCTGTTCTTTGCTTTGCTTCTCATGGCCTCTGCTGTTTCTGCCACCACCAAAACTCCTTTCATCCACAAACCTCCCATTCGCAGAATGGGTATGAAGTACAAAAATGCACCAAAAGCCCCAAAGAGCCCAATTTTTGGTGATGCCCCATGGAGGGGAGGTTATACTTAG

Coding sequence (CDS)

ATGGCGTCCCTCAAGATTTGTGTTCTGTTCTTTGCTTTGCTTCTCATGGCCTCTGCTGTTTCTGCCACCACCAAAACTCCTTTCATCCACAAACCTCCCATTCGCAGAATGGGTATGAAGTACAAAAATGCACCAAAAGCCCCAAAGAGCCCAATTTTTGGTGATGCCCCATGGAGGGGAGGTTATACTTAG

Protein sequence

MASLKICVLFFALLLMASAVSATTKTPFIHKPPIRRMGMKYKNAPKAPKSPIFGDAPWRGGYT

Homology

[Close]

BLAST of Sed0010718 vs. NCBI nr
Match: KAA0067663.1 (hypothetical protein E6C27_scaffold70G00320 [Cucumis melo var. makuwa] >TYK23667.1 hypothetical protein E5676_scaffold577G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 1.2e-04
Identity = 33/67 (49.25%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 3  SLKICVLFFA--LLLMASAVSATTKTPFIHKPPIRRMGMKYKNAPKA---PK--SPIFGD 62
          SL + +LFFA  L + ++ VSAT   P +HKPPIR+MG++YK   KA   PK   P   D
Sbjct: 9  SLMLKLLFFANLLFIASTTVSATNNIPLLHKPPIRKMGVEYKKGEKAVVVPKVNRPTSDD 68

[Close]

BLAST of Sed0010718 vs. ExPASy TrEMBL
Match: A0A5D3DJ60 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00330 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.6e-05
Identity = 33/67 (49.25%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 3  SLKICVLFFA--LLLMASAVSATTKTPFIHKPPIRRMGMKYKNAPKA---PK--SPIFGD 62
          SL + +LFFA  L + ++ VSAT   P +HKPPIR+MG++YK   KA   PK   P   D
Sbjct: 9  SLMLKLLFFANLLFIASTTVSATNNIPLLHKPPIRKMGVEYKKGEKAVVVPKVNRPTSDD 68

The following BLAST results are available for this feature:

BLAST of Sed0010718 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067663.1	1.2e-04	49.25	hypothetical protein E6C27_scaffold70G00320 [Cucumis melo var. makuwa] >TYK23667...	[more]

BLAST of Sed0010718 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0010718 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DJ60	5.6e-05	49.25	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Sed0010718 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010718.1	Sed0010718.1	mRNA