Sed0010675 (gene) Chayote v1

Overview


Name	Sed0010675
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein LSD1 isoform X2
Location	LG04: 6889027 .. 6891404 (+)
RNA-Seq Expression	Sed0010675
Synteny	Sed0010675

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAAGTATTAACTCCCCAACACCTACCATTTACTGCAAGCTGCAAATGTATGTGCTAATATCAGTATTCTTTCATCCAGTTTTCTTTTGTTTTCCTTGTATAGTTTAGCTCACTTTTTTTTTTGTCTAGCAGTTCTTTCATTTCCAGAGATGGTAGCAACCAAGATGAAGCACAACGTCGTCTTTGCCTGCAAACCTGAGTTTTGAAGATATCTCAAAGGAAAAGAAGTTTCTTCAACAACACATCACAAAACTGCCATTTCCTCCAGTTACTTGTATGGTTACACTTCCTCTAAACTTCTAGTTTTGATATAATTTGAGTTGTTTACCTGTGTGGATCTGAGAAACTGTAGGAAGAACTCGAATCTTCTAATGAGAGATGGCTATTTTTGTTTGTATAGATAAACCCTAATGTACACAAAGCTCTTAACATGAAAAATCAAATTCTGGAGAGAATTTGATATTCATGTACTTAGATTCTATTCTCTTCAAAAAGTAACTAACTCATGAATTGATTTGAAGTCATAAATGTTATTTTTTTTAAAATAATAGGTTGTCAAAGTCAAAGCCAAATAGTGTGCTCTGGATGTAAAAATTTAACCTCCATTTGCTGTGCTCTTTGCTATGCTGCATCCCCTGTGCCAACCTCTGGTTTGTTTCTAAATCTTTCATTTTTCTTTTGATCTTTCTGAAATTATGCTTCAAGCTTAATTCAATCGAAATCTTTTTCTCTAATTTTAATGAAATTAGTACAGTTAAAAGGGCTGTGATTTTTTCATTGCAACTTTAATTTCCATTCCTCATTTCACCAATTTTCATCTCTTGTAAATCACACTGACCAACAACCACATATTCATAAATGATTGTTGTGGTCAAAGAGATAAGCTATAAACTCAAATTTCTTTAAAGTGATGAGTTCAAACCAATGATGAATTATTGAAATCGATTTTTGTGGACCATCTCTGTGTCTATCTTATTAGTCGTTACTATATATTGTTGAGTCAGGACGTTAAATTTGTGTAGATATTCACAATTATCAATGATTGAATAAAATGAGGATTGATGATTTACTGTTAGGTATCTAGCCCCAAAACCTGCAGAAAACGCCAATACCAGATACCCACACTGGAAATCCTACTTGTAATATTGATAATAAGACCTCAAAACAGAGTATAAATCCAGGGACTTACAATAACAACAACATAAGAACGTAGATAAGAGGAATAGCAAAAACGAAAAGAAATAACAACAAACTCCCGGTGAGTTCGAGAGCACCGGTTCTCTCCTCCCTGCTTCACTCCTGAGACTTCTTTTTCTGCCTTGCCCATCAAGCCAAAATGTTCTTTTATACCCTTTATGCCAAGGCTCAAAACGACCCACACTCACCTCTAACTGCCGGCCCCACTTCCTGACCCCTGCCCATGTTCAAATACTTTTTTACCCCTCCTGGCATACGTCAACAACCCAGGTGTCCTTTTCCCTTCCTCTTCATTTGCAATCCGAGGTCGTCTAGCATATGTATGTATAATTGGGGGTCTAACATTACCCGCCGGGGGTCAGATACACCTTGTCCTCAAGGTGGAATTGCAGAAACTGTTGTTTCATGTAGTTAACTTCCTCCCACGTTGCTTCGCTGTGCTGCTGACCTGCCCATTTGACTAGCCATTCTTCATGTCCCAAATCTTTATTCCAACGCAGTCCGAGCACCTCCTCCGGTGAAGCTACCCATTCGAAATCTTCGGTAATAAGCATGGGGTTCTGTTGTACCTGGTGCTGTTGTCCCACACTTTTTTTTAGTTGGGACACATGAAAAACATCATGAATAGAAGAATTTGGTGGTAGTGCCAACCGATAGGCCACCTTGCCAATACATTCCGTGATCGGATAGGGTCCGAAAAACTTTGGAGCCAATTTCTCACAGCGGTGTCGTGCAAGGGAACGCTGTCTATAAGGTCGCAACTTTAGATACACCATGTCCCCTTCGGTGTAAGCTACTTCCCGTCTATGCTTATCAGCATAACGCTTCATCCGTTCTTGTGCCAAATGTAGGCGTTCCCGCAGAGCTGCTAGAGTCAAATCCCTCTCTAACAATTGTTGTTCCACAACATCGTTTGAAGTCCTGTTTTCTCCATAAGAGATAAGCGGTGGAGGGGCTCTCCCATAAACCACCTGGAATGGCGTGGTATTAAGAGAGATATGATAGTTGGTCTTATACCAATATTCAGCCCAAGCCATCCATTTGTTCCATTGCTTGGGGTGCTCGCTACAAAAACATCTTAAGTAAATCTCAAGGCAGTTGTTTACACGCTCAGTTTGCCCATCCGTCTGTGGATGAAAAGCCGTGCTCCTCTTCAGTCGCGTACCTTGACTCTTGA

mRNA sequence

ATGCCAAATTTTGAAGATATCTCAAAGGAAAAGAAGTTTCTTCAACAACACATCACAAAACTGCCATTTCCTCCAGTTACTTGTTGTCAAAGTCAAAGCCAAATAGTGTGCTCTGGATGTAAAAATTTAACCTCCATTTGCTGTGCTCTTTGCTATGCTGCATCCCCTGTGCCAACCTCTGGCAGTTGTTTACACGCTCAGTTTGCCCATCCGTCTGTGGATGAAAAGCCGTGCTCCTCTTCAGTCGCGTACCTTGACTCTTGA

Coding sequence (CDS)

ATGCCAAATTTTGAAGATATCTCAAAGGAAAAGAAGTTTCTTCAACAACACATCACAAAACTGCCATTTCCTCCAGTTACTTGTTGTCAAAGTCAAAGCCAAATAGTGTGCTCTGGATGTAAAAATTTAACCTCCATTTGCTGTGCTCTTTGCTATGCTGCATCCCCTGTGCCAACCTCTGGCAGTTGTTTACACGCTCAGTTTGCCCATCCGTCTGTGGATGAAAAGCCGTGCTCCTCTTCAGTCGCGTACCTTGACTCTTGA

Protein sequence

MPNFEDISKEKKFLQQHITKLPFPPVTCCQSQSQIVCSGCKNLTSICCALCYAASPVPTSGSCLHAQFAHPSVDEKPCSSSVAYLDS

Homology

[Close]

BLAST of Sed0010675 vs. NCBI nr
Match: KAE8650032.1 (hypothetical protein Csa_010851 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-09
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 17  HITKLPFPPVTCCQSQSQIVCSGCKNL-------TSICCALCYAASPVPTSG 62
           +ITK+PFPPVTCC  Q+QI+CSGCKNL       TSICCALC+A +PVPTSG
Sbjct: 374 NITKMPFPPVTCC--QNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSG 423

[Close]

BLAST of Sed0010675 vs. NCBI nr
Match: XP_008448703.1 (PREDICTED: protein LOL1 isoform X1 [Cucumis melo])

HSP 1 Score: 69.3 bits (168), Expect = 1.8e-08
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 17 HITKLPFPPVTCCQSQSQIVCSGCKNL-------TSICCALCYAASPVPTSG 62
          +ITK+PFP VTCC  Q+QI+CSGCKN+       TSICCALC+A +PVPTSG
Sbjct: 47 NITKMPFPSVTCC--QNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSG 96

[Close]

BLAST of Sed0010675 vs. NCBI nr
Match: XP_031738784.1 (protein LSD1 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 9.1e-08
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 21 LPFPPVTCCQSQSQIVCSGCKNL-------TSICCALCYAASPVPTSG 62
          +PFPPVTCC  Q+QI+CSGCKNL       TSICCALC+A +PVPTSG
Sbjct: 1  MPFPPVTCC--QNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSG 46

[Close]

BLAST of Sed0010675 vs. NCBI nr
Match: XP_008448702.2 (PREDICTED: protein LSD1 isoform X2 [Cucumis melo] >XP_016900659.1 PREDICTED: protein LSD1 isoform X2 [Cucumis melo] >XP_016900660.1 PREDICTED: protein LSD1 isoform X2 [Cucumis melo])

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-06
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 0


Query: 21 LPFPPVTCCQSQSQIVCSGCKNL-------TSICCALCYAASPVPTSG 62
          +PFP VTCC  Q+QI+CSGCKN+       TSICCALC+A +PVPTSG
Sbjct: 1  MPFPSVTCC--QNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSG 46

[Close]

BLAST of Sed0010675 vs. NCBI nr
Match: XP_022145337.1 (protein LSD1-like [Momordica charantia])

HSP 1 Score: 60.8 bits (146), Expect = 6.5e-06
Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 21 LPFPPVTCCQSQSQIVCSGCKNL-------TSICCALCYAASPVPTSG 62
          +P PPVTCC  QS++VCSGCKNL       TSICC LC++ SPVPT G
Sbjct: 1  MPIPPVTCC--QSRMVCSGCKNLLIYPVGATSICCTLCHSVSPVPTPG 46

[Close]

BLAST of Sed0010675 vs. ExPASy TrEMBL
Match: A0A0A0L592 (zf-LSD1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G011780 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.0e-09
Identity = 40/73 (54.79%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 17 HITKLPFPPVTCCQSQSQIVCSGCKNL-------TSICCALCYAASPVPTSGSCLHAQFA 76
          +ITK+PFPPVTCC  Q+QI+CSGCKNL       TSICCALC+A +PVPT          
Sbjct: 33 NITKMPFPPVTCC--QNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPT---------- 91

Query: 77 HPSVDEKPCSSSV 83
            SV   PCS +V
Sbjct: 93 --SVAATPCSCTV 91

[Close]

BLAST of Sed0010675 vs. ExPASy TrEMBL
Match: A0A1S3BKC0 (protein LOL1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490794 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 8.9e-09
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 17 HITKLPFPPVTCCQSQSQIVCSGCKNL-------TSICCALCYAASPVPTSG 62
          +ITK+PFP VTCC  Q+QI+CSGCKN+       TSICCALC+A +PVPTSG
Sbjct: 47 NITKMPFPSVTCC--QNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSG 96

[Close]

BLAST of Sed0010675 vs. ExPASy TrEMBL
Match: A0A1S3BJQ2 (protein LSD1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490794 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.4e-07
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 0


Query: 21 LPFPPVTCCQSQSQIVCSGCKNL-------TSICCALCYAASPVPTSG 62
          +PFP VTCC  Q+QI+CSGCKN+       TSICCALC+A +PVPTSG
Sbjct: 1  MPFPSVTCC--QNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSG 46

[Close]

BLAST of Sed0010675 vs. ExPASy TrEMBL
Match: A0A6J1CWA3 (protein LSD1-like OS=Momordica charantia OX=3673 GN=LOC111014817 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.2e-06
Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 21 LPFPPVTCCQSQSQIVCSGCKNL-------TSICCALCYAASPVPTSG 62
          +P PPVTCC  QS++VCSGCKNL       TSICC LC++ SPVPT G
Sbjct: 1  MPIPPVTCC--QSRMVCSGCKNLLIYPVGATSICCTLCHSVSPVPTPG 46

[Close]

BLAST of Sed0010675 vs. TAIR 10
Match: AT1G32540.1 (lsd one like 1 )

HSP 1 Score: 43.1 bits (100), Expect = 1.3e-04
Identity = 25/57 (43.86%), Postives = 32/57 (56.14%), Query Frame = 0


Query: 13  FLQQHITKLPFPPVTCCQSQSQIVCSGCKNL-------TSICCALCYAASPVPTSGS 63
           FL + I K     V     QSQ+VCSGC+NL       TS+CCA+C A + VP  G+
Sbjct: 46  FLVKKINKNNLRFVGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGT 102

The following BLAST results are available for this feature:

BLAST of Sed0010675 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650032.1	1.3e-09	69.23	hypothetical protein Csa_010851 [Cucumis sativus]	[more]
XP_008448703.1	1.8e-08	65.38	PREDICTED: protein LOL1 isoform X1 [Cucumis melo]	[more]
XP_031738784.1	9.1e-08	68.75	protein LSD1 [Cucumis sativus]	[more]
XP_008448702.2	1.3e-06	64.58	PREDICTED: protein LSD1 isoform X2 [Cucumis melo] >XP_016900659.1 PREDICTED: pro...	[more]
XP_022145337.1	6.5e-06	62.50	protein LSD1-like [Momordica charantia]	[more]

BLAST of Sed0010675 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0010675 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L592	4.0e-09	54.79	zf-LSD1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G011780 PE=...	[more]
A0A1S3BKC0	8.9e-09	65.38	protein LOL1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490794 PE=4 SV=1	[more]
A0A1S3BJQ2	6.4e-07	64.58	protein LSD1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490794 PE=4 SV=1	[more]
A0A6J1CWA3	3.2e-06	62.50	protein LSD1-like OS=Momordica charantia OX=3673 GN=LOC111014817 PE=4 SV=1	[more]

BLAST of Sed0010675 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32540.1	1.3e-04	43.86	lsd one like 1	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010675.1	Sed0010675.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus