Sed0010665 (gene) Chayote v1

Overview


Name	Sed0010665
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Reverse transcriptase
Location	LG03: 40964733 .. 40966378 (-)
RNA-Seq Expression	Sed0010665
Synteny	Sed0010665

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACATGATGGATAGGGTGTTCAAATCATTTTTGGACAGCTTCGTCATCGTGTTCATTGACGATATTCTGATTTATTCGAGGTCTAAGGAGGACCATGCAGAGTATTTGAGGCGAGTATTGGCAGCTTTAAGGGAAAACCAGCTTTATGCGAAGTTTTCCAAATGTGATTTCTGGTTGGAGCAGGTAGCCTTTCTAGGTCACGTAGTTTCGAGAGATGGTATAGCCGTGGACCCCGCAAAGATTGAGGCCGTGAGTTCGTTGGCTGCCGACTTCAGGCTGCGAGATACGCAGCTTTTCTGGTTTGGCGAGTTACTACCACCGGTTCGTTAAGACTTTTCCGCCATAGCCTCGCCCCTCACTCGTCCGACGAGGAAGGGTGTCGAGTTTGTTTGGGGCAATAAGTGTGATGAGAGCTTTGCGTGCCTCAAGCGCAGCTTTGACTTCAAGACTGTGTTGGCAATCCGGAGGGGACAGTGGTTTCGTGGTTTACAAATGATGCTTCCAAGTTTGGGTTAGGTTGTGTGTTGATGCAAAGACGGAAGGTCATTGCCTATGCTTCCCGTCACCAAGCCGTATGAGCAGAACTACCCGACTCATGATATGGAGTTGGCAGCAGAGTGTTCGCGGCCAAGATTTGGAGGCATTACCCGTATGGTGAGCGGATTCAGATGTTTACCGATCACCAGAGCCTCAAGTATCTGTTTACTCAGAAGGAGTTGAATATGAGGCAGAGGAGATGGTTAGAGTTGGTAAAGGATTATGACTGTGAGATTTTGTACCATCCGGGTAAAGCCAATGTAGTGGCTGATGCTTTGAGTAGGAAGACGTCACACTCCGCGGCGTTGTTGAGTTCCCAGCCCAGATTGCGGAGAGAGTTCGAGCGGGCCGAAGTTGCAGTGTTGTTGGGTGAGATTACCGCCAGAGTACCTCAATTGACAGTTCAGCCGTCGATTAGGCAGCGGATTATTGATAGCCAGCTGAGTGACCCCGCACTTAAGAGATTGTTTGACAGAGTTAGTGCTGAAGGAGATTTTGATTTCGTATTCTCGCCAGACAGTGGGTTGGCTTATAGAGGTCGGTTGTGTGTTCCGGATGTTGCAGGATTGCGAGCAGAGTTGCTCTCAGAGGCCCACAGTTCTCCGTTTGCCTGGCACCCCGGGGGTACTAAAATGTATCAGGACCTTAAGCAGACATTCTGGTGGATGGGTATGAAAAGAAATGTTGCAGAGTTTGTTAGTCGGTGCCTCACTTGTCAGCAAGTGAAGGCGCCCAGGCAGAGGCCAGCCGGTTTGTTGCAGCCACTGAGTGTGCCTCAGTGGAAATGGGAGGAGATCTCCATGGACTTTATTTCTGGGTTGCCGAGGACTCCGAGGAAGTACTCTCAGATCTGGGTGATAGTCGACCGTTTGACTAAGAGCGCACACTTCATTCCCGGTAGAGACACTTATACCGTGGAACAGTGGGCGCAGTTGTTTTTGGAGCAGATCATTCGTTATCATGGTGTACCTGTGAGGATTGTATCTGATCAGGACTCGCGGTTCACTTCTCGTTTCTGGAGAGCACACCAGAAGGGTTTAGGCACAAAGTGCGCTTTCAAAGATGACTTTTTCACCCTCGCATGGATGGACAGATCGAGAGGGTGA

mRNA sequence

ATGGACATGATGGATAGGGTGTTCAAATCATTTTTGGACAGCTTCGTCATCGTGTTCATTGACGATATTCTGATTTATTCGAGGTCTAAGGAGGACCATGCAGAGTATTTGAGGCGAGTATTGGCAGCTTTAAGGGAAAACCAGCTTTATGCGAAGTTTTCCAAATGTGATTTCTGGTTGGAGCAGGTAGCCTTTCTAGGTCACGTAGTTTCGAGAGATGGTATAGCCGTGGACCCCGCAAAGATTGAGGCCGTGAGTTCGTTGGCTGCCGACTTCAGGCTGCGAGATACGCAGCTTTTCTGGTTTGGCGAGTTACTACCACCGGTTCTTGGCAGCAGAGTGTTCGCGGCCAAGATTTGGAGGCATTACCCGTATGGTGAGCGGATTCAGATGTTTACCGATCACCAGAGCCTCAAGTATCTGTTTACTCAGAAGGAGTTGAATATGAGGCAGAGGAGATGGTTAGAGTTGGTAAAGGATTATGACTGTGAGATTTTGTACCATCCGGGTAAAGCCAATGTAGTGGCTGATGCTTTGAGTAGGAAGACGTCACACTCCGCGGCGTTGTTGAGTTCCCAGCCCAGATTGCGGAGAGAGTTCGAGCGGGCCGAAGTTGCAGTGTTGTTGGGTGAGATTACCGCCAGAGTACCTCAATTGACAGTTCAGCCGTCGATTAGGCAGCGGATTATTGATAGCCAGCTGAGTGACCCCGCACTTAAGAGATTGTTTGACAGAGTTAGTGCTGAAGGAGATTTTGATTTCGTATTCTCGCCAGACAGTGGGTTGGCTTATAGAGGTCGGTTGTGTGTTCCGGATGTTGCAGGATTGCGAGCAGAGTTGCTCTCAGAGGCCCACAGTTCTCCGTTTGCCTGGCACCCCGGGGGTACTAAAATGTATCAGGACCTTAAGCAGACATTCTGGTGGATGGGTATGAAAAGAAATGTTGCAGAGTTTGTTAGTCGGTGCCTCACTTGTCAGCAAGTGAAGGCGCCCAGGCAGAGGCCAGCCGGTTTGTTGCAGCCACTGAGTGTGCCTCAGTGGAAATGGGAGGAGATCTCCATGGACTTTATTTCTGGGTTGCCGAGGACTCCGAGGAAGTACTCTCAGATCTGGGTGATAGTCGACCGTTTGACTAAGAGCGCACACTTCATTCCCGGTAGAGACACTTATACCGTGGAACAGTGGGCGCAGTTGTTTTTGGAGCAGATCATTCGTTATCATGGTGTACCTGTGAGGATTGTATCTGATCAGGACTCGCGGTTCACTTCTCGTTTCTGGAGAGCACACCAGAAGGGTTTAGGCACAAAGTGCGCTTTCAAAGATGACTTTTTCACCCTCGCATGGATGGACAGATCGAGAGGGTGA

Coding sequence (CDS)

ATGGACATGATGGATAGGGTGTTCAAATCATTTTTGGACAGCTTCGTCATCGTGTTCATTGACGATATTCTGATTTATTCGAGGTCTAAGGAGGACCATGCAGAGTATTTGAGGCGAGTATTGGCAGCTTTAAGGGAAAACCAGCTTTATGCGAAGTTTTCCAAATGTGATTTCTGGTTGGAGCAGGTAGCCTTTCTAGGTCACGTAGTTTCGAGAGATGGTATAGCCGTGGACCCCGCAAAGATTGAGGCCGTGAGTTCGTTGGCTGCCGACTTCAGGCTGCGAGATACGCAGCTTTTCTGGTTTGGCGAGTTACTACCACCGGTTCTTGGCAGCAGAGTGTTCGCGGCCAAGATTTGGAGGCATTACCCGTATGGTGAGCGGATTCAGATGTTTACCGATCACCAGAGCCTCAAGTATCTGTTTACTCAGAAGGAGTTGAATATGAGGCAGAGGAGATGGTTAGAGTTGGTAAAGGATTATGACTGTGAGATTTTGTACCATCCGGGTAAAGCCAATGTAGTGGCTGATGCTTTGAGTAGGAAGACGTCACACTCCGCGGCGTTGTTGAGTTCCCAGCCCAGATTGCGGAGAGAGTTCGAGCGGGCCGAAGTTGCAGTGTTGTTGGGTGAGATTACCGCCAGAGTACCTCAATTGACAGTTCAGCCGTCGATTAGGCAGCGGATTATTGATAGCCAGCTGAGTGACCCCGCACTTAAGAGATTGTTTGACAGAGTTAGTGCTGAAGGAGATTTTGATTTCGTATTCTCGCCAGACAGTGGGTTGGCTTATAGAGGTCGGTTGTGTGTTCCGGATGTTGCAGGATTGCGAGCAGAGTTGCTCTCAGAGGCCCACAGTTCTCCGTTTGCCTGGCACCCCGGGGGTACTAAAATGTATCAGGACCTTAAGCAGACATTCTGGTGGATGGGTATGAAAAGAAATGTTGCAGAGTTTGTTAGTCGGTGCCTCACTTGTCAGCAAGTGAAGGCGCCCAGGCAGAGGCCAGCCGGTTTGTTGCAGCCACTGAGTGTGCCTCAGTGGAAATGGGAGGAGATCTCCATGGACTTTATTTCTGGGTTGCCGAGGACTCCGAGGAAGTACTCTCAGATCTGGGTGATAGTCGACCGTTTGACTAAGAGCGCACACTTCATTCCCGGTAGAGACACTTATACCGTGGAACAGTGGGCGCAGTTGTTTTTGGAGCAGATCATTCGTTATCATGGTGTACCTGTGAGGATTGTATCTGATCAGGACTCGCGGTTCACTTCTCGTTTCTGGAGAGCACACCAGAAGGGTTTAGGCACAAAGTGCGCTTTCAAAGATGACTTTTTCACCCTCGCATGGATGGACAGATCGAGAGGGTGA

Protein sequence

MDMMDRVFKSFLDSFVIVFIDDILIYSRSKEDHAEYLRRVLAALRENQLYAKFSKCDFWLEQVAFLGHVVSRDGIAVDPAKIEAVSSLAADFRLRDTQLFWFGELLPPVLGSRVFAAKIWRHYPYGERIQMFTDHQSLKYLFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKTSHSAALLSSQPRLRREFERAEVAVLLGEITARVPQLTVQPSIRQRIIDSQLSDPALKRLFDRVSAEGDFDFVFSPDSGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRNVAEFVSRCLTCQQVKAPRQRPAGLLQPLSVPQWKWEEISMDFISGLPRTPRKYSQIWVIVDRLTKSAHFIPGRDTYTVEQWAQLFLEQIIRYHGVPVRIVSDQDSRFTSRFWRAHQKGLGTKCAFKDDFFTLAWMDRSRG

Homology

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BLAST of Sed0010665 vs. NCBI nr
Match: KAA0035938.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 583.6 bits (1503), Expect = 1.5e-162
Identity = 287/486 (59.05%), Postives = 354/486 (72.84%), Query Frame = 0


Query: 1   MDMMDRVFKSFLDSFVIVFIDDILIYSRSKEDHAEYLRRVLAALRENQLYAKFSKCDFWL 60
           MD+M+RVF+ FLD+FVIVFIDDILIYS+++ +H E+LR VL  LR+N+LYAKFSKC+FWL
Sbjct: 66  MDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWL 125

Query: 61  EQVAFLGHVVSRDGIAVDPAKIEAVS---------------SLAADFR------------ 120
           +QV+FLGHVVS+ G++VDPAKIEAV+                LA  +R            
Sbjct: 126 KQVSFLGHVVSKAGVSVDPAKIEAVTCWTRPSTVSEVRSFLGLAGYYRRFVIYSDASKKG 185

Query: 121 -------------LRDTQLFWFGELLPP---VLGSRVFAAKIWRHYPYGERIQMFTDHQS 180
                            QL    +  P     L + VFA KIWRHY YGE+IQ+FTDH+S
Sbjct: 186 LGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKS 245

Query: 181 LKYLFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKTSHSAALLSSQPRLR 240
           LKY FTQKELNMRQRRWLELVKDYDCEILYHPGKANVV DALSRK SHSAAL++ Q  L 
Sbjct: 246 LKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVVDALSRKVSHSAALITRQAPLH 305

Query: 241 REFERAEVAVLLGEITARVPQLTVQPSIRQRIIDSQLSDPALKRLFDRVSAEGDFDFVFS 300
           R+ ERAE+AV +G +T ++ QLTVQP++RQRIID+Q +DP L        A    +F  S
Sbjct: 306 RDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLS 365

Query: 301 PDSGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRNVAE 360
            D GL +  RLCVP  + ++ ELL+EAHSSPF+ HPG TKMYQDLK+ +WW  MKR VAE
Sbjct: 366 SDGGLLFESRLCVPSDSAIKTELLTEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAE 425

Query: 361 FVSRCLTCQQVKAPRQRPAGLLQPLSVPQWKWEEISMDFISGLPRTPRKYSQIWVIVDRL 420
           FVS+CL CQQVKAPRQ+PAGLLQPLS+P+WKWE +SMDFI+GLPRT R ++ IWV+VDRL
Sbjct: 426 FVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRL 485

Query: 421 TKSAHFIPGRDTYTVEQWAQLFLEQIIRYHGVPVRIVSDQDSRFTSRFWRAHQKGLGTKC 444
           TKSAHF+PG+ TYT  +WAQL++ +I+R HGVPV IVSD+D+RFTS+FW+  Q  +GT+ 
Sbjct: 486 TKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRL 545

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BLAST of Sed0010665 vs. NCBI nr
Match: KAA0041490.1 (hypothetical protein E6C27_scaffold6G00780 [Cucumis melo var. makuwa])

HSP 1 Score: 579.3 bits (1492), Expect = 2.8e-161
Identity = 285/473 (60.25%), Postives = 353/473 (74.63%), Query Frame = 0


Query: 1    MDMMDRVFKSFLDSFVIVFIDDILIYSRSKEDHAEYLRRVLAALRENQLYAKFSKCDFWL 60
            MD+M+RVFK FLDSFVIVFI DIL+YS+++ +H E+LR+VL  LR N+LYAKFSKC+FWL
Sbjct: 551  MDLMNRVFKDFLDSFVIVFIVDILVYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFWL 610

Query: 61   EQVAFLGHVVSRDGIAVDPAKIEAVSS---------------LAADFR------------ 120
            ++V FLGHVVS +G++VDPAKIEAV++               LA  +R            
Sbjct: 611  KKVFFLGHVVSNEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDFSRKVVA 670

Query: 121  LRDTQLFWFGELLPP---VLGSRVFAAKIWRHYPYGERIQMFTDHQSLKYLFTQKELNMR 180
                QL    +  P     L + VFA KIWRHY YGE+IQ++TDH+SLKY FTQKELNMR
Sbjct: 671  YASRQLKSHEQNYPTHYLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMR 730

Query: 181  QRRWLELVKDYDCEILYHPGKANVVADALSRKTSHSAALLSSQPRLRREFERAEVAVLLG 240
             RRWLELVKDYDCEILYHPGKANVVADALSRK +HSAAL++ Q  L R+FERAE+AV +G
Sbjct: 731  HRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQAPLLRDFERAEIAVSVG 790

Query: 241  EITARVPQLTVQPSIRQRIIDSQLSDPALKRLFDRVSAEGDFDFVFSPDSGLAYRGRLCV 300
            E+T+++ QL+VQP++RQRII +QL+DP L      V      DF  S D GL + GRLCV
Sbjct: 791  EVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVETGQGEDFSISFDDGLMFEGRLCV 850

Query: 301  PDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRNVAEFVSRCLTCQQVKA 360
            P+ + ++ ELL+EAHSSPF  HPG TKMYQDL+  +WW  MKR VA+FVSRCL CQQVKA
Sbjct: 851  PEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKA 910

Query: 361  PRQRPAGLLQPLSVPQWKWEEISMDFISGLPRTPRKYSQIWVIVDRLTKSAHFIPGRDTY 420
            PRQRPAGLLQPLSVP WKWE +SMDFI+GLP+T + Y+ IWV+VDRLTKSAHF+ G+ TY
Sbjct: 911  PRQRPAGLLQPLSVPGWKWESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVSGKSTY 970

Query: 421  TVEQWAQLFLEQIIRYHGVPVRIVSDQDSRFTSRFWRAHQKGLGTKCAFKDDF 444
            T  +W QL++ +I+R HGVPV I+SD+D+RFTS+FW+  Q  LGT+  F   F
Sbjct: 971  TASKWGQLYMTEIVRLHGVPVSIISDRDTRFTSKFWKGLQLALGTRLDFSTAF 1023

[Close]

BLAST of Sed0010665 vs. NCBI nr
Match: TYK04315.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 577.0 bits (1486), Expect = 1.4e-160
Identity = 283/488 (57.99%), Postives = 352/488 (72.13%), Query Frame = 0


Query: 1    MDMMDRVFKSFLDSFVIVFIDDILIYSRSKEDHAEYLRRVLAALRENQLYAKFSKCDFWL 60
            MD+M+RVF+ FLD+FVIVFIDDILIYS+++ +H E+LR VL  LR+N+LYAKFSKC+FWL
Sbjct: 807  MDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWL 866

Query: 61   EQVAFLGHVVSRDGIAVDPAKIEAVSSLAADFRLRDTQLFWFGELLP------------- 120
            +QV+FLGHVVS+ G++VDPAKIEAV+S      + + + F   E L              
Sbjct: 867  KQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSIVSEVRSFLGKEFLSFGARHFCDSDASK 926

Query: 121  ----------------------------PV----LGSRVFAAKIWRHYPYGERIQMFTDH 180
                                        P     L + VFA KIWRHY YGE+IQ+FTDH
Sbjct: 927  KGLGCVLMKQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDH 986

Query: 181  QSLKYLFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKTSHSAALLSSQPR 240
            +SLKY FTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALS+K SHSAAL++ Q  
Sbjct: 987  KSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSKKVSHSAALITRQTP 1046

Query: 241  LRREFERAEVAVLLGEITARVPQLTVQPSIRQRIIDSQLSDPALKRLFDRVSAEGDFDFV 300
            L R+ ERAE+AV +G +T ++ QLTVQP++RQRIID+Q +DP L        A    +F 
Sbjct: 1047 LHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFF 1106

Query: 301  FSPDSGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRNV 360
             S D G  +  RLCVP  + ++ ELLSEAHSSPF+ HPG TK+YQDLK+ +WW  MKR V
Sbjct: 1107 ISSDGGHLFERRLCVPSDSVVKTELLSEAHSSPFSMHPGSTKIYQDLKRVYWWRNMKREV 1166

Query: 361  AEFVSRCLTCQQVKAPRQRPAGLLQPLSVPQWKWEEISMDFISGLPRTPRKYSQIWVIVD 420
            AEFVS+CL CQQVKAPRQ+PAGLLQPLSVP+WKWE +SMDFI+GLPRT R ++ IWV+VD
Sbjct: 1167 AEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTQRGFTVIWVVVD 1226

Query: 421  RLTKSAHFIPGRDTYTVEQWAQLFLEQIIRYHGVPVRIVSDQDSRFTSRFWRAHQKGLGT 444
            RLTK  HF+PG+ T+T  +WAQL++ +I+R HGVPV IVSD+D+RFTS+FW+  Q  +GT
Sbjct: 1227 RLTKLVHFVPGKSTFTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGT 1286

[Close]

BLAST of Sed0010665 vs. NCBI nr
Match: KAA0047001.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 576.2 bits (1484), Expect = 2.4e-160
Identity = 284/489 (58.08%), Postives = 350/489 (71.57%), Query Frame = 0


Query: 1    MDMMDRVFKSFLDSFVIVFIDDILIYSRSKEDHAEYLRRVLAALRENQLYAKFSKCDFWL 60
            MD+M RVF+ FLD+F+IVFIDDILIYS+++ +H E+LR VL  LR+N+LYAKFSKC+FWL
Sbjct: 729  MDLMKRVFREFLDTFLIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWL 788

Query: 61   EQVAFLGHVVSRDGIAVDPAKIEAVSSLAADFRLRD------------------------ 120
            +QV+FLGHVVS+ G+ VDPAKIEAV+       + +                        
Sbjct: 789  KQVSFLGHVVSKAGVCVDPAKIEAVTGWTRPSTVSEKLVTAPVLTVPDGSGSFVIYSDAS 848

Query: 121  -------------------TQLFWFGELLPP---VLGSRVFAAKIWRHYPYGERIQMFTD 180
                                QL    +  P     L + VFA KIWRHY YGE+IQ+FTD
Sbjct: 849  KKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELATVVFALKIWRHYLYGEKIQIFTD 908

Query: 181  HQSLKYLFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKTSHSAALLSSQP 240
            ++SLKY FTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK SHSAAL++ Q 
Sbjct: 909  YKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQA 968

Query: 241  RLRREFERAEVAVLLGEITARVPQLTVQPSIRQRIIDSQLSDPALKRLFDRVSAEGDFDF 300
             L R+ ERAE+AV +G +T ++ QLTVQP++RQRIID+Q +DP L        A    +F
Sbjct: 969  PLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEF 1028

Query: 301  VFSPDSGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRN 360
              S D GL +  RLCVP  + ++ ELLSEAHSSPF+ HPG TKMYQDLK+ +WW  MKR 
Sbjct: 1029 SLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKRE 1088

Query: 361  VAEFVSRCLTCQQVKAPRQRPAGLLQPLSVPQWKWEEISMDFISGLPRTPRKYSQIWVIV 420
            VAEFVSRCL CQQVKAPRQ+PAGLLQPLS+P+WKWE +SMDFI+GLPRT R ++ IWV+V
Sbjct: 1089 VAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVV 1148

Query: 421  DRLTKSAHFIPGRDTYTVEQWAQLFLEQIIRYHGVPVRIVSDQDSRFTSRFWRAHQKGLG 444
            DRLTKSAHF+PG+  YT  +WAQL++ +I+R HGVPV IVSD+D+RFTS+FW+  Q  +G
Sbjct: 1149 DRLTKSAHFVPGKSIYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMG 1208

[Close]

BLAST of Sed0010665 vs. NCBI nr
Match: KAA0035574.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 574.7 bits (1480), Expect = 7.0e-160
Identity = 282/497 (56.74%), Postives = 353/497 (71.03%), Query Frame = 0


Query: 1    MDMMDRVFKSFLDSFVIVFIDDILIYSRSKEDHAEYLRRVLAALRENQLYAKFSKCDFWL 60
            MD+M+RVF+ FLD+FVIVFIDDILIYS+++  H E+LR +L  LR+N+LYAKFSKC+FWL
Sbjct: 602  MDLMNRVFREFLDTFVIVFIDDILIYSKTEAKHEEHLRMILQTLRDNKLYAKFSKCEFWL 661

Query: 61   EQVAFLGHVVSRDGIAVDPAKIEAVSSLAADFRLRDTQLF--------WF---------- 120
            +QV+FLGHVVS+ G++VDPAKIEAV+S      + + + F        WF          
Sbjct: 662  KQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSEVRSFLGLAGYYRWFVAYSYSSYSV 721

Query: 121  ---------------------------GELLPPV-----------------LGSRVFAAK 180
                                       G+++                    L + VFA K
Sbjct: 722  DQEGSSFCLEQGIDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK 781

Query: 181  IWRHYPYGERIQMFTDHQSLKYLFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA 240
            IWRHY YGE+IQ+FTDH+SLKY FTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA
Sbjct: 782  IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA 841

Query: 241  LSRKTSHSAALLSSQPRLRREFERAEVAVLLGEITARVPQLTVQPSIRQRIIDSQLSDPA 300
            LSRK SHSAAL++ Q  L R+ ERAE+AV +G +T ++ QLTVQP++RQRIID+Q+++P 
Sbjct: 842  LSRKVSHSAALITQQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQINNPY 901

Query: 301  LKRLFDRVSAEGDFDFVFSPDSGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKM 360
            L        A    +F  S D GL +  RLCVP  + ++ ELLSEAHSSPF+ HPG TKM
Sbjct: 902  LVEKRVLAEAGQAVEFSISSDGGLLFERRLCVPSNSAVKTELLSEAHSSPFSMHPGSTKM 961

Query: 361  YQDLKQTFWWMGMKRNVAEFVSRCLTCQQVKAPRQRPAGLLQPLSVPQWKWEEISMDFIS 420
            YQDLK+ +WW  MKR VAEFVS+CL CQQVKAPRQ+P GLLQPLS+P+WKWE +SMDFI+
Sbjct: 962  YQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSIPEWKWENVSMDFIT 1021

Query: 421  GLPRTPRKYSQIWVIVDRLTKSAHFIPGRDTYTVEQWAQLFLEQIIRYHGVPVRIVSDQD 436
            GLPRT R ++ IWV+VDR TKSAHF+PG+ TYT  +WAQL++ +I+R HGVPV IVSD+D
Sbjct: 1022 GLPRTLRGFTVIWVVVDRFTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRD 1081

[Close]

BLAST of Sed0010665 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 8.3e-39
Identity = 123/520 (23.65%), Postives = 213/520 (40.96%), Query Frame = 0


Query: 13   DSFVIVFIDDILIYSRSKEDHAEYLRRVLAALRENQLYAKFSKCDFWLEQVAFLGHVVSR 72
            +S V+ ++DDILI+S+S+ +H ++++ VL  L+   L    +KC+F   QV F+G+ +S 
Sbjct: 558  ESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISE 617

Query: 73   DGIAVDPAKIEAVSSLAADFRLRDTQLFW-------------------FGELL------- 132
             G       I+ V         ++ + F                       LL       
Sbjct: 618  KGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWK 677

Query: 133  ------------------PPVLGSRVFAAKI----------------------------- 192
                              PPVL    F+ KI                             
Sbjct: 678  WTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGY 737

Query: 193  ----------------------------WRHYPYG--ERIQMFTDHQSLKYLFTQKE--L 252
                                        WRHY     E  ++ TDH++L    T +    
Sbjct: 738  YSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPE 797

Query: 253  NMRQRRWLELVKDYDCEILYHPGKANVVADALSRKTSHSAALLSSQPRLRREFERAEVAV 312
            N R  RW   ++D++ EI Y PG AN +ADALSR       ++     + ++ E   +  
Sbjct: 798  NKRLARWQLFLQDFNFEINYRPGSANHIADALSR-------IVDETEPIPKDSEDNSINF 857

Query: 313  LLGEITARVPQLTVQPSIRQRIIDSQLSDPALKRLFDRVSAEGDFDFVFSPDSGLAYRGR 372
                    V Q+++    + +++    +D  L  L +      + +        +  + +
Sbjct: 858  --------VNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQ 917

Query: 373  LCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRNVAEFVSRCLTCQQ 428
            + +P+   L   ++ + H      HPG   +   + + F W G+++ + E+V  C TCQ 
Sbjct: 918  ILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQI 977

[Close]

BLAST of Sed0010665 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 8.3e-39
Identity = 123/520 (23.65%), Postives = 213/520 (40.96%), Query Frame = 0


Query: 13   DSFVIVFIDDILIYSRSKEDHAEYLRRVLAALRENQLYAKFSKCDFWLEQVAFLGHVVSR 72
            +S V+ ++DDILI+S+S+ +H ++++ VL  L+   L    +KC+F   QV F+G+ +S 
Sbjct: 558  ESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISE 617

Query: 73   DGIAVDPAKIEAVSSLAADFRLRDTQLFW-------------------FGELL------- 132
             G       I+ V         ++ + F                       LL       
Sbjct: 618  KGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWK 677

Query: 133  ------------------PPVLGSRVFAAKI----------------------------- 192
                              PPVL    F+ KI                             
Sbjct: 678  WTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGY 737

Query: 193  ----------------------------WRHYPYG--ERIQMFTDHQSLKYLFTQKE--L 252
                                        WRHY     E  ++ TDH++L    T +    
Sbjct: 738  YSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPE 797

Query: 253  NMRQRRWLELVKDYDCEILYHPGKANVVADALSRKTSHSAALLSSQPRLRREFERAEVAV 312
            N R  RW   ++D++ EI Y PG AN +ADALSR       ++     + ++ E   +  
Sbjct: 798  NKRLARWQLFLQDFNFEINYRPGSANHIADALSR-------IVDETEPIPKDSEDNSINF 857

Query: 313  LLGEITARVPQLTVQPSIRQRIIDSQLSDPALKRLFDRVSAEGDFDFVFSPDSGLAYRGR 372
                    V Q+++    + +++    +D  L  L +      + +        +  + +
Sbjct: 858  --------VNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQ 917

Query: 373  LCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRNVAEFVSRCLTCQQ 428
            + +P+   L   ++ + H      HPG   +   + + F W G+++ + E+V  C TCQ 
Sbjct: 918  ILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQI 977

[Close]

BLAST of Sed0010665 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 8.3e-39
Identity = 123/520 (23.65%), Postives = 213/520 (40.96%), Query Frame = 0


Query: 13   DSFVIVFIDDILIYSRSKEDHAEYLRRVLAALRENQLYAKFSKCDFWLEQVAFLGHVVSR 72
            +S V+ ++DDILI+S+S+ +H ++++ VL  L+   L    +KC+F   QV F+G+ +S 
Sbjct: 558  ESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISE 617

Query: 73   DGIAVDPAKIEAVSSLAADFRLRDTQLFW-------------------FGELL------- 132
             G       I+ V         ++ + F                       LL       
Sbjct: 618  KGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWK 677

Query: 133  ------------------PPVLGSRVFAAKI----------------------------- 192
                              PPVL    F+ KI                             
Sbjct: 678  WTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGY 737

Query: 193  ----------------------------WRHYPYG--ERIQMFTDHQSLKYLFTQKE--L 252
                                        WRHY     E  ++ TDH++L    T +    
Sbjct: 738  YSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPE 797

Query: 253  NMRQRRWLELVKDYDCEILYHPGKANVVADALSRKTSHSAALLSSQPRLRREFERAEVAV 312
            N R  RW   ++D++ EI Y PG AN +ADALSR       ++     + ++ E   +  
Sbjct: 798  NKRLARWQLFLQDFNFEINYRPGSANHIADALSR-------IVDETEPIPKDSEDNSINF 857

Query: 313  LLGEITARVPQLTVQPSIRQRIIDSQLSDPALKRLFDRVSAEGDFDFVFSPDSGLAYRGR 372
                    V Q+++    + +++    +D  L  L +      + +        +  + +
Sbjct: 858  --------VNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQ 917

Query: 373  LCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRNVAEFVSRCLTCQQ 428
            + +P+   L   ++ + H      HPG   +   + + F W G+++ + E+V  C TCQ 
Sbjct: 918  ILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQI 977

[Close]

BLAST of Sed0010665 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 8.3e-39
Identity = 123/520 (23.65%), Postives = 213/520 (40.96%), Query Frame = 0


Query: 13   DSFVIVFIDDILIYSRSKEDHAEYLRRVLAALRENQLYAKFSKCDFWLEQVAFLGHVVSR 72
            +S V+ ++DDILI+S+S+ +H ++++ VL  L+   L    +KC+F   QV F+G+ +S 
Sbjct: 558  ESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISE 617

Query: 73   DGIAVDPAKIEAVSSLAADFRLRDTQLFW-------------------FGELL------- 132
             G       I+ V         ++ + F                       LL       
Sbjct: 618  KGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWK 677

Query: 133  ------------------PPVLGSRVFAAKI----------------------------- 192
                              PPVL    F+ KI                             
Sbjct: 678  WTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGY 737

Query: 193  ----------------------------WRHYPYG--ERIQMFTDHQSLKYLFTQKE--L 252
                                        WRHY     E  ++ TDH++L    T +    
Sbjct: 738  YSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPE 797

Query: 253  NMRQRRWLELVKDYDCEILYHPGKANVVADALSRKTSHSAALLSSQPRLRREFERAEVAV 312
            N R  RW   ++D++ EI Y PG AN +ADALSR       ++     + ++ E   +  
Sbjct: 798  NKRLARWQLFLQDFNFEINYRPGSANHIADALSR-------IVDETEPIPKDSEDNSINF 857

Query: 313  LLGEITARVPQLTVQPSIRQRIIDSQLSDPALKRLFDRVSAEGDFDFVFSPDSGLAYRGR 372
                    V Q+++    + +++    +D  L  L +      + +        +  + +
Sbjct: 858  --------VNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQ 917

Query: 373  LCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRNVAEFVSRCLTCQQ 428
            + +P+   L   ++ + H      HPG   +   + + F W G+++ + E+V  C TCQ 
Sbjct: 918  ILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQI 977

[Close]

BLAST of Sed0010665 vs. ExPASy Swiss-Prot
Match: P0CT37 (Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-4 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 8.3e-39
Identity = 123/520 (23.65%), Postives = 213/520 (40.96%), Query Frame = 0


Query: 13   DSFVIVFIDDILIYSRSKEDHAEYLRRVLAALRENQLYAKFSKCDFWLEQVAFLGHVVSR 72
            +S V+ ++DDILI+S+S+ +H ++++ VL  L+   L    +KC+F   QV F+G+ +S 
Sbjct: 558  ESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISE 617

Query: 73   DGIAVDPAKIEAVSSLAADFRLRDTQLFW-------------------FGELL------- 132
             G       I+ V         ++ + F                       LL       
Sbjct: 618  KGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWK 677

Query: 133  ------------------PPVLGSRVFAAKI----------------------------- 192
                              PPVL    F+ KI                             
Sbjct: 678  WTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGY 737

Query: 193  ----------------------------WRHYPYG--ERIQMFTDHQSLKYLFTQKE--L 252
                                        WRHY     E  ++ TDH++L    T +    
Sbjct: 738  YSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPE 797

Query: 253  NMRQRRWLELVKDYDCEILYHPGKANVVADALSRKTSHSAALLSSQPRLRREFERAEVAV 312
            N R  RW   ++D++ EI Y PG AN +ADALSR       ++     + ++ E   +  
Sbjct: 798  NKRLARWQLFLQDFNFEINYRPGSANHIADALSR-------IVDETEPIPKDSEDNSINF 857

Query: 313  LLGEITARVPQLTVQPSIRQRIIDSQLSDPALKRLFDRVSAEGDFDFVFSPDSGLAYRGR 372
                    V Q+++    + +++    +D  L  L +      + +        +  + +
Sbjct: 858  --------VNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQ 917

Query: 373  LCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRNVAEFVSRCLTCQQ 428
            + +P+   L   ++ + H      HPG   +   + + F W G+++ + E+V  C TCQ 
Sbjct: 918  ILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQI 977

[Close]

BLAST of Sed0010665 vs. ExPASy TrEMBL
Match: A0A5A7SZD6 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G001250 PE=4 SV=1)

HSP 1 Score: 583.6 bits (1503), Expect = 7.3e-163
Identity = 287/486 (59.05%), Postives = 354/486 (72.84%), Query Frame = 0


Query: 1   MDMMDRVFKSFLDSFVIVFIDDILIYSRSKEDHAEYLRRVLAALRENQLYAKFSKCDFWL 60
           MD+M+RVF+ FLD+FVIVFIDDILIYS+++ +H E+LR VL  LR+N+LYAKFSKC+FWL
Sbjct: 66  MDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWL 125

Query: 61  EQVAFLGHVVSRDGIAVDPAKIEAVS---------------SLAADFR------------ 120
           +QV+FLGHVVS+ G++VDPAKIEAV+                LA  +R            
Sbjct: 126 KQVSFLGHVVSKAGVSVDPAKIEAVTCWTRPSTVSEVRSFLGLAGYYRRFVIYSDASKKG 185

Query: 121 -------------LRDTQLFWFGELLPP---VLGSRVFAAKIWRHYPYGERIQMFTDHQS 180
                            QL    +  P     L + VFA KIWRHY YGE+IQ+FTDH+S
Sbjct: 186 LGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKS 245

Query: 181 LKYLFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKTSHSAALLSSQPRLR 240
           LKY FTQKELNMRQRRWLELVKDYDCEILYHPGKANVV DALSRK SHSAAL++ Q  L 
Sbjct: 246 LKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVVDALSRKVSHSAALITRQAPLH 305

Query: 241 REFERAEVAVLLGEITARVPQLTVQPSIRQRIIDSQLSDPALKRLFDRVSAEGDFDFVFS 300
           R+ ERAE+AV +G +T ++ QLTVQP++RQRIID+Q +DP L        A    +F  S
Sbjct: 306 RDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLS 365

Query: 301 PDSGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRNVAE 360
            D GL +  RLCVP  + ++ ELL+EAHSSPF+ HPG TKMYQDLK+ +WW  MKR VAE
Sbjct: 366 SDGGLLFESRLCVPSDSAIKTELLTEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAE 425

Query: 361 FVSRCLTCQQVKAPRQRPAGLLQPLSVPQWKWEEISMDFISGLPRTPRKYSQIWVIVDRL 420
           FVS+CL CQQVKAPRQ+PAGLLQPLS+P+WKWE +SMDFI+GLPRT R ++ IWV+VDRL
Sbjct: 426 FVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRL 485

Query: 421 TKSAHFIPGRDTYTVEQWAQLFLEQIIRYHGVPVRIVSDQDSRFTSRFWRAHQKGLGTKC 444
           TKSAHF+PG+ TYT  +WAQL++ +I+R HGVPV IVSD+D+RFTS+FW+  Q  +GT+ 
Sbjct: 486 TKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRL 545

[Close]

BLAST of Sed0010665 vs. ExPASy TrEMBL
Match: A0A5A7TDX1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold6G00780 PE=4 SV=1)

HSP 1 Score: 579.3 bits (1492), Expect = 1.4e-161
Identity = 285/473 (60.25%), Postives = 353/473 (74.63%), Query Frame = 0


Query: 1    MDMMDRVFKSFLDSFVIVFIDDILIYSRSKEDHAEYLRRVLAALRENQLYAKFSKCDFWL 60
            MD+M+RVFK FLDSFVIVFI DIL+YS+++ +H E+LR+VL  LR N+LYAKFSKC+FWL
Sbjct: 551  MDLMNRVFKDFLDSFVIVFIVDILVYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFWL 610

Query: 61   EQVAFLGHVVSRDGIAVDPAKIEAVSS---------------LAADFR------------ 120
            ++V FLGHVVS +G++VDPAKIEAV++               LA  +R            
Sbjct: 611  KKVFFLGHVVSNEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDFSRKVVA 670

Query: 121  LRDTQLFWFGELLPP---VLGSRVFAAKIWRHYPYGERIQMFTDHQSLKYLFTQKELNMR 180
                QL    +  P     L + VFA KIWRHY YGE+IQ++TDH+SLKY FTQKELNMR
Sbjct: 671  YASRQLKSHEQNYPTHYLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMR 730

Query: 181  QRRWLELVKDYDCEILYHPGKANVVADALSRKTSHSAALLSSQPRLRREFERAEVAVLLG 240
             RRWLELVKDYDCEILYHPGKANVVADALSRK +HSAAL++ Q  L R+FERAE+AV +G
Sbjct: 731  HRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQAPLLRDFERAEIAVSVG 790

Query: 241  EITARVPQLTVQPSIRQRIIDSQLSDPALKRLFDRVSAEGDFDFVFSPDSGLAYRGRLCV 300
            E+T+++ QL+VQP++RQRII +QL+DP L      V      DF  S D GL + GRLCV
Sbjct: 791  EVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVETGQGEDFSISFDDGLMFEGRLCV 850

Query: 301  PDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRNVAEFVSRCLTCQQVKA 360
            P+ + ++ ELL+EAHSSPF  HPG TKMYQDL+  +WW  MKR VA+FVSRCL CQQVKA
Sbjct: 851  PEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKA 910

Query: 361  PRQRPAGLLQPLSVPQWKWEEISMDFISGLPRTPRKYSQIWVIVDRLTKSAHFIPGRDTY 420
            PRQRPAGLLQPLSVP WKWE +SMDFI+GLP+T + Y+ IWV+VDRLTKSAHF+ G+ TY
Sbjct: 911  PRQRPAGLLQPLSVPGWKWESVSMDFITGLPKTLKGYTVIWVVVDRLTKSAHFVSGKSTY 970

Query: 421  TVEQWAQLFLEQIIRYHGVPVRIVSDQDSRFTSRFWRAHQKGLGTKCAFKDDF 444
            T  +W QL++ +I+R HGVPV I+SD+D+RFTS+FW+  Q  LGT+  F   F
Sbjct: 971  TASKWGQLYMTEIVRLHGVPVSIISDRDTRFTSKFWKGLQLALGTRLDFSTAF 1023

[Close]

BLAST of Sed0010665 vs. ExPASy TrEMBL
Match: A0A5D3BYT1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G00450 PE=4 SV=1)

HSP 1 Score: 577.0 bits (1486), Expect = 6.8e-161
Identity = 283/488 (57.99%), Postives = 352/488 (72.13%), Query Frame = 0


Query: 1    MDMMDRVFKSFLDSFVIVFIDDILIYSRSKEDHAEYLRRVLAALRENQLYAKFSKCDFWL 60
            MD+M+RVF+ FLD+FVIVFIDDILIYS+++ +H E+LR VL  LR+N+LYAKFSKC+FWL
Sbjct: 807  MDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWL 866

Query: 61   EQVAFLGHVVSRDGIAVDPAKIEAVSSLAADFRLRDTQLFWFGELLP------------- 120
            +QV+FLGHVVS+ G++VDPAKIEAV+S      + + + F   E L              
Sbjct: 867  KQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSIVSEVRSFLGKEFLSFGARHFCDSDASK 926

Query: 121  ----------------------------PV----LGSRVFAAKIWRHYPYGERIQMFTDH 180
                                        P     L + VFA KIWRHY YGE+IQ+FTDH
Sbjct: 927  KGLGCVLMKQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDH 986

Query: 181  QSLKYLFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKTSHSAALLSSQPR 240
            +SLKY FTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALS+K SHSAAL++ Q  
Sbjct: 987  KSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSKKVSHSAALITRQTP 1046

Query: 241  LRREFERAEVAVLLGEITARVPQLTVQPSIRQRIIDSQLSDPALKRLFDRVSAEGDFDFV 300
            L R+ ERAE+AV +G +T ++ QLTVQP++RQRIID+Q +DP L        A    +F 
Sbjct: 1047 LHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFF 1106

Query: 301  FSPDSGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRNV 360
             S D G  +  RLCVP  + ++ ELLSEAHSSPF+ HPG TK+YQDLK+ +WW  MKR V
Sbjct: 1107 ISSDGGHLFERRLCVPSDSVVKTELLSEAHSSPFSMHPGSTKIYQDLKRVYWWRNMKREV 1166

Query: 361  AEFVSRCLTCQQVKAPRQRPAGLLQPLSVPQWKWEEISMDFISGLPRTPRKYSQIWVIVD 420
            AEFVS+CL CQQVKAPRQ+PAGLLQPLSVP+WKWE +SMDFI+GLPRT R ++ IWV+VD
Sbjct: 1167 AEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTQRGFTVIWVVVD 1226

Query: 421  RLTKSAHFIPGRDTYTVEQWAQLFLEQIIRYHGVPVRIVSDQDSRFTSRFWRAHQKGLGT 444
            RLTK  HF+PG+ T+T  +WAQL++ +I+R HGVPV IVSD+D+RFTS+FW+  Q  +GT
Sbjct: 1227 RLTKLVHFVPGKSTFTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGT 1286

[Close]

BLAST of Sed0010665 vs. ExPASy TrEMBL
Match: A0A5A7U077 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G001920 PE=4 SV=1)

HSP 1 Score: 576.2 bits (1484), Expect = 1.2e-160
Identity = 284/489 (58.08%), Postives = 350/489 (71.57%), Query Frame = 0


Query: 1    MDMMDRVFKSFLDSFVIVFIDDILIYSRSKEDHAEYLRRVLAALRENQLYAKFSKCDFWL 60
            MD+M RVF+ FLD+F+IVFIDDILIYS+++ +H E+LR VL  LR+N+LYAKFSKC+FWL
Sbjct: 729  MDLMKRVFREFLDTFLIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWL 788

Query: 61   EQVAFLGHVVSRDGIAVDPAKIEAVSSLAADFRLRD------------------------ 120
            +QV+FLGHVVS+ G+ VDPAKIEAV+       + +                        
Sbjct: 789  KQVSFLGHVVSKAGVCVDPAKIEAVTGWTRPSTVSEKLVTAPVLTVPDGSGSFVIYSDAS 848

Query: 121  -------------------TQLFWFGELLPP---VLGSRVFAAKIWRHYPYGERIQMFTD 180
                                QL    +  P     L + VFA KIWRHY YGE+IQ+FTD
Sbjct: 849  KKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELATVVFALKIWRHYLYGEKIQIFTD 908

Query: 181  HQSLKYLFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKTSHSAALLSSQP 240
            ++SLKY FTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK SHSAAL++ Q 
Sbjct: 909  YKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQA 968

Query: 241  RLRREFERAEVAVLLGEITARVPQLTVQPSIRQRIIDSQLSDPALKRLFDRVSAEGDFDF 300
             L R+ ERAE+AV +G +T ++ QLTVQP++RQRIID+Q +DP L        A    +F
Sbjct: 969  PLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEF 1028

Query: 301  VFSPDSGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRN 360
              S D GL +  RLCVP  + ++ ELLSEAHSSPF+ HPG TKMYQDLK+ +WW  MKR 
Sbjct: 1029 SLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKRE 1088

Query: 361  VAEFVSRCLTCQQVKAPRQRPAGLLQPLSVPQWKWEEISMDFISGLPRTPRKYSQIWVIV 420
            VAEFVSRCL CQQVKAPRQ+PAGLLQPLS+P+WKWE +SMDFI+GLPRT R ++ IWV+V
Sbjct: 1089 VAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVV 1148

Query: 421  DRLTKSAHFIPGRDTYTVEQWAQLFLEQIIRYHGVPVRIVSDQDSRFTSRFWRAHQKGLG 444
            DRLTKSAHF+PG+  YT  +WAQL++ +I+R HGVPV IVSD+D+RFTS+FW+  Q  +G
Sbjct: 1149 DRLTKSAHFVPGKSIYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMG 1208

[Close]

BLAST of Sed0010665 vs. ExPASy TrEMBL
Match: A0A5A7SW90 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G002460 PE=4 SV=1)

HSP 1 Score: 574.7 bits (1480), Expect = 3.4e-160
Identity = 282/497 (56.74%), Postives = 353/497 (71.03%), Query Frame = 0


Query: 1    MDMMDRVFKSFLDSFVIVFIDDILIYSRSKEDHAEYLRRVLAALRENQLYAKFSKCDFWL 60
            MD+M+RVF+ FLD+FVIVFIDDILIYS+++  H E+LR +L  LR+N+LYAKFSKC+FWL
Sbjct: 602  MDLMNRVFREFLDTFVIVFIDDILIYSKTEAKHEEHLRMILQTLRDNKLYAKFSKCEFWL 661

Query: 61   EQVAFLGHVVSRDGIAVDPAKIEAVSSLAADFRLRDTQLF--------WF---------- 120
            +QV+FLGHVVS+ G++VDPAKIEAV+S      + + + F        WF          
Sbjct: 662  KQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSEVRSFLGLAGYYRWFVAYSYSSYSV 721

Query: 121  ---------------------------GELLPPV-----------------LGSRVFAAK 180
                                       G+++                    L + VFA K
Sbjct: 722  DQEGSSFCLEQGIDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALK 781

Query: 181  IWRHYPYGERIQMFTDHQSLKYLFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA 240
            IWRHY YGE+IQ+FTDH+SLKY FTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA
Sbjct: 782  IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADA 841

Query: 241  LSRKTSHSAALLSSQPRLRREFERAEVAVLLGEITARVPQLTVQPSIRQRIIDSQLSDPA 300
            LSRK SHSAAL++ Q  L R+ ERAE+AV +G +T ++ QLTVQP++RQRIID+Q+++P 
Sbjct: 842  LSRKVSHSAALITQQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQINNPY 901

Query: 301  LKRLFDRVSAEGDFDFVFSPDSGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKM 360
            L        A    +F  S D GL +  RLCVP  + ++ ELLSEAHSSPF+ HPG TKM
Sbjct: 902  LVEKRVLAEAGQAVEFSISSDGGLLFERRLCVPSNSAVKTELLSEAHSSPFSMHPGSTKM 961

Query: 361  YQDLKQTFWWMGMKRNVAEFVSRCLTCQQVKAPRQRPAGLLQPLSVPQWKWEEISMDFIS 420
            YQDLK+ +WW  MKR VAEFVS+CL CQQVKAPRQ+P GLLQPLS+P+WKWE +SMDFI+
Sbjct: 962  YQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSIPEWKWENVSMDFIT 1021

Query: 421  GLPRTPRKYSQIWVIVDRLTKSAHFIPGRDTYTVEQWAQLFLEQIIRYHGVPVRIVSDQD 436
            GLPRT R ++ IWV+VDR TKSAHF+PG+ TYT  +WAQL++ +I+R HGVPV IVSD+D
Sbjct: 1022 GLPRTLRGFTVIWVVVDRFTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRD 1081

The following BLAST results are available for this feature:

BLAST of Sed0010665 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035938.1	1.5e-162	59.05	pol protein [Cucumis melo var. makuwa]	[more]
KAA0041490.1	2.8e-161	60.25	hypothetical protein E6C27_scaffold6G00780 [Cucumis melo var. makuwa]	[more]
TYK04315.1	1.4e-160	57.99	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0047001.1	2.4e-160	58.08	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0035574.1	7.0e-160	56.74	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Sed0010665 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0CT41	8.3e-39	23.65	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	8.3e-39	23.65	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	8.3e-39	23.65	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	8.3e-39	23.65	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT37	8.3e-39	23.65	Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Sed0010665 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SZD6	7.3e-163	59.05	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G001250 PE...	[more]
A0A5A7TDX1	1.4e-161	60.25	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold6G...	[more]
A0A5D3BYT1	6.8e-161	57.99	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold52...	[more]
A0A5A7U077	1.2e-160	58.08	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold23...	[more]
A0A5A7SW90	3.4e-160	56.74	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold28...	[more]

BLAST of Sed0010665 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 339..441 e-value: 1.1E-17 score: 65.9
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 114..161 e-value: 1.9E-10 score: 41.0
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..76 e-value: 2.2E-24 score: 87.8
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 276..330 e-value: 7.2E-17 score: 61.2
None	No IPR available	GENE3D	1.10.340.70		coord: 254..329 e-value: 3.4E-17 score: 64.4
None	No IPR available	PANTHER	PTHR45835	YALI0A06105P	coord: 131..182 coord: 267..437
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 114..182 e-value: 8.09118E-30 score: 110.66
None	No IPR available	CDD	cd01647	RT_LTR	coord: 3..70 e-value: 6.92857E-26 score: 101.518
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 3..69 e-value: 9.6E-10 score: 38.3
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..70 score: 9.306096
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 341..454 score: 9.194621
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..167
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 342..437

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010665.1	Sed0010665.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0004518	nuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016779	nucleotidyltransferase activity