Sed0010567 (gene) Chayote v1

Overview


Name	Sed0010567
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Protein of unknown function, DUF584
Location	LG04: 11273579 .. 11274575 (-)
RNA-Seq Expression	Sed0010567
Synteny	Sed0010567

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGGTTTTAATTTGCCTCTTTCTCATCTTTGGAATCATTTGATTTGACCCAACTAGATTTAGATTTTTAGAGGATGAAAAGTTAAAAAAAAAATTAAGGTTGAAATAATATTTTCATCCATGTAGTTTTAAAGTTTGTTTTATAGTTTTTAATTTTAATTGATGTATTTTCAAAGAAATTTAAAATTGACTTCTATAATAAATTTTTATTTTTTCTTTAAAAATTTTACTATCTTCTTCTATAAAATTTAGAAATATATTCCCAAGTTTGTATTGAAATATTAATATTATTGAACCAATTTCAATTAATATCATTTATCATAACGACTCAATTTAGGGGATCGTTTACTTTGTGGTAATTAGGATAATTAGAATCTTCTTAGATGTCCGAAATTTAAGATGTCCAACATTCTTAGATCACCATGTTTGTTTTGCAATAATATTTTTATGGCTATTTTGAAAACTGTATTTATTTAATAAATTTTGTTCACGGAAGTGTCTTAAATGCCCTCATAACTTAATGTACACATTAATTTGTATAATTAAAATCTATATATCGTTTTTTTTTTATTAATTTGAATATTATATTTTAAAATAAATTTCCTTAGAAAAAATCTAAAATTCATTTATTAGTTAAACAAGTAAAAATTTGTTATATATAGAAAGTGAGGATAATTATATTTAAAACATATTTAAATCGGCTCAGCGATCGATTCCGCGGGAGTTTAGACCGAACAGAGGTAGAAACGAAAGGAGATTCGATTCGGAGGGCGATGAGTCTTCGAGCGACTGCGGCGATATCGACGGAGTTGGCAATGAGGAAGGATTTGATTACAGAGCTCTGCCGCATGAATTGATAGCAAAGAGACTGGCTAGGGCTCAGATTTCGTCGTTTTCTGTGGTCGAAGGAGTTGGAAGAACTTTGAAAGGAAGAGATCTGAGTAGAGTTAGAAATGTCGTTCTTATCAAAACTGGTTTTCTCGAATTATGTTAA

mRNA sequence

ATGCGATCGATTCCGCGGGAGTTTAGACCGAACAGAGGTAGAAACGAAAGGAGATTCGATTCGGAGGGCGATGAGTCTTCGAGCGACTGCGGCGATATCGACGGAGTTGGCAATGAGGAAGGATTTGATTACAGAGCTCTGCCGCATGAATTGATAGCAAAGAGACTGGCTAGGGCTCAGATTTCGTCGTTTTCTGTGGTCGAAGGAGTTGGAAGAACTTTGAAAGGAAGAGATCTGAGTAGAGTTAGAAATGTCGTTCTTATCAAAACTGGTTTTCTCGAATTATGTTAA

Coding sequence (CDS)

ATGCGATCGATTCCGCGGGAGTTTAGACCGAACAGAGGTAGAAACGAAAGGAGATTCGATTCGGAGGGCGATGAGTCTTCGAGCGACTGCGGCGATATCGACGGAGTTGGCAATGAGGAAGGATTTGATTACAGAGCTCTGCCGCATGAATTGATAGCAAAGAGACTGGCTAGGGCTCAGATTTCGTCGTTTTCTGTGGTCGAAGGAGTTGGAAGAACTTTGAAAGGAAGAGATCTGAGTAGAGTTAGAAATGTCGTTCTTATCAAAACTGGTTTTCTCGAATTATGTTAA

Protein sequence

MRSIPREFRPNRGRNERRFDSEGDESSSDCGDIDGVGNEEGFDYRALPHELIAKRLARAQISSFSVVEGVGRTLKGRDLSRVRNVVLIKTGFLELC

Homology

[Close]

BLAST of Sed0010567 vs. NCBI nr
Match: KAG6592046.1 (hypothetical protein SDJN03_14392, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112.8 bits (281), Expect = 1.6e-21
Identity = 64/94 (68.09%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 2   RSIPREFRPNRGRNERRFDSEGDESSSDCGDID-GVGNEEGFDYRALPHELIAKRLARAQ 61
           RSIP+ F+PN  +N R F SE D+S SD    D G  ++EGFD R  PHELIAKR ARAQ
Sbjct: 90  RSIPQWFKPNGSKNPRNFASEHDDSWSDGVASDGGDSDDEGFDNRIPPHELIAKRRARAQ 149

Query: 62  ISSFSVVEGVGRTLKGRDLSRVRNVVLIKTGFLE 95
           ISSFSV EG+GRTLKGRDLS+VRN VL KTGFLE
Sbjct: 150 ISSFSVFEGIGRTLKGRDLSKVRNAVLNKTGFLE 183

[Close]

BLAST of Sed0010567 vs. NCBI nr
Match: KAG7024924.1 (hypothetical protein SDJN02_13744, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 112.8 bits (281), Expect = 1.6e-21
Identity = 64/94 (68.09%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 2   RSIPREFRPNRGRNERRFDSEGDESSSDCGDID-GVGNEEGFDYRALPHELIAKRLARAQ 61
           RSIP+ F+PN  +N R F SE D+S SD    D G  ++EGFD R  PHELIAKR ARAQ
Sbjct: 90  RSIPQWFKPNGSKNPRNFASEHDDSWSDGVASDGGDSDDEGFDNRIPPHELIAKRRARAQ 149

Query: 62  ISSFSVVEGVGRTLKGRDLSRVRNVVLIKTGFLE 95
           ISSFSV EG+GRTLKGRDLS+VRN VL KTGFLE
Sbjct: 150 ISSFSVFEGIGRTLKGRDLSKVRNAVLNKTGFLE 183

[Close]

BLAST of Sed0010567 vs. NCBI nr
Match: XP_022936189.1 (uncharacterized protein LOC111442861 [Cucurbita moschata])

HSP 1 Score: 112.5 bits (280), Expect = 2.1e-21
Identity = 66/94 (70.21%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 2   RSIPREFRPNRGRNERRFDSEGDESSSDCGDIDGVG-NEEGFDYRALPHELIAKRLARAQ 61
           RSIP+ F+PN  +N R F SE D+S SD    DG   +EEGFD R  PHELIAKR ARAQ
Sbjct: 90  RSIPQWFKPNGIKNLRNFASEHDDSWSDGVASDGDDEDEEGFDNRIPPHELIAKRRARAQ 149

Query: 62  ISSFSVVEGVGRTLKGRDLSRVRNVVLIKTGFLE 95
           ISSFSV EG+GRTLKGRDLSRVRN VL KTGFLE
Sbjct: 150 ISSFSVFEGIGRTLKGRDLSRVRNAVLNKTGFLE 183

[Close]

BLAST of Sed0010567 vs. NCBI nr
Match: XP_023536166.1 (uncharacterized protein LOC111797411 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 111.7 bits (278), Expect = 3.6e-21
Identity = 65/94 (69.15%), Postives = 71/94 (75.53%), Query Frame = 0


Query: 2   RSIPREFRPNRGRNERRFDSEGDESSSDCGDIDG-VGNEEGFDYRALPHELIAKRLARAQ 61
           RSIP+ F+PN   N R F SE D+S SD    DG   +EEGFD R  PHELIAKR ARAQ
Sbjct: 90  RSIPQWFKPNGSINPRNFASEHDDSWSDGVASDGDEEDEEGFDNRIPPHELIAKRRARAQ 149

Query: 62  ISSFSVVEGVGRTLKGRDLSRVRNVVLIKTGFLE 95
           ISSFSV EG+GRTLKGRDLS+VRN VL KTGFLE
Sbjct: 150 ISSFSVFEGIGRTLKGRDLSKVRNAVLNKTGFLE 183

[Close]

BLAST of Sed0010567 vs. NCBI nr
Match: XP_022139627.1 (uncharacterized protein LOC111010482 [Momordica charantia])

HSP 1 Score: 109.0 bits (271), Expect = 2.3e-20
Identity = 64/96 (66.67%), Postives = 70/96 (72.92%), Query Frame = 0


Query: 2   RSIPREFRPNRGRNERRFDSEGDESSSDCGDIDGVG---NEEGFDYRALPHELIAKRLAR 61
           RSIP+ F PN  +N R+   E D+     GD DG     +EEGFD R  PHELIAKRLAR
Sbjct: 91  RSIPQWFTPNGNKNPRKSVPEHDDDGGG-GDDDGDSEDEDEEGFDCRVPPHELIAKRLAR 150

Query: 62  AQISSFSVVEGVGRTLKGRDLSRVRNVVLIKTGFLE 95
           AQISSFSV EGVGRTLKGRDLS+VRN VL KTGFLE
Sbjct: 151 AQISSFSVFEGVGRTLKGRDLSKVRNAVLTKTGFLE 185

[Close]

BLAST of Sed0010567 vs. ExPASy TrEMBL
Match: A0A6J1F7L6 (uncharacterized protein LOC111442861 OS=Cucurbita moschata OX=3662 GN=LOC111442861 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.0e-21
Identity = 66/94 (70.21%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 2   RSIPREFRPNRGRNERRFDSEGDESSSDCGDIDGVG-NEEGFDYRALPHELIAKRLARAQ 61
           RSIP+ F+PN  +N R F SE D+S SD    DG   +EEGFD R  PHELIAKR ARAQ
Sbjct: 90  RSIPQWFKPNGIKNLRNFASEHDDSWSDGVASDGDDEDEEGFDNRIPPHELIAKRRARAQ 149

Query: 62  ISSFSVVEGVGRTLKGRDLSRVRNVVLIKTGFLE 95
           ISSFSV EG+GRTLKGRDLSRVRN VL KTGFLE
Sbjct: 150 ISSFSVFEGIGRTLKGRDLSRVRNAVLNKTGFLE 183

[Close]

BLAST of Sed0010567 vs. ExPASy TrEMBL
Match: A0A6J1CEH3 (uncharacterized protein LOC111010482 OS=Momordica charantia OX=3673 GN=LOC111010482 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.1e-20
Identity = 64/96 (66.67%), Postives = 70/96 (72.92%), Query Frame = 0


Query: 2   RSIPREFRPNRGRNERRFDSEGDESSSDCGDIDGVG---NEEGFDYRALPHELIAKRLAR 61
           RSIP+ F PN  +N R+   E D+     GD DG     +EEGFD R  PHELIAKRLAR
Sbjct: 91  RSIPQWFTPNGNKNPRKSVPEHDDDGGG-GDDDGDSEDEDEEGFDCRVPPHELIAKRLAR 150

Query: 62  AQISSFSVVEGVGRTLKGRDLSRVRNVVLIKTGFLE 95
           AQISSFSV EGVGRTLKGRDLS+VRN VL KTGFLE
Sbjct: 151 AQISSFSVFEGVGRTLKGRDLSKVRNAVLTKTGFLE 185

[Close]

BLAST of Sed0010567 vs. ExPASy TrEMBL
Match: A0A6J1FSC1 (uncharacterized protein LOC111446424 OS=Cucurbita moschata OX=3662 GN=LOC111446424 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 7.2e-20
Identity = 59/93 (63.44%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 2   RSIPREFRPNRGRNERRFDSEGDESSSDCGDIDGVGNEEGFDYRALPHELIAKRLARAQI 61
           RSIPR F+PN      +FD   D+  +D  + +    EEGF+ R  PHELIAKRL RAQI
Sbjct: 94  RSIPRWFKPNGSETPWKFDC--DDGVADESEEEEEEEEEGFEERVPPHELIAKRLVRAQI 153

Query: 62  SSFSVVEGVGRTLKGRDLSRVRNVVLIKTGFLE 95
           SSFSV+EGVGRTLKGRDLS+VRN VL KTGFLE
Sbjct: 154 SSFSVLEGVGRTLKGRDLSKVRNAVLTKTGFLE 184

[Close]

BLAST of Sed0010567 vs. ExPASy TrEMBL
Match: A0A6J1IX28 (uncharacterized protein LOC111480685 OS=Cucurbita maxima OX=3661 GN=LOC111480685 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.0e-18
Identity = 57/93 (61.29%), Postives = 66/93 (70.97%), Query Frame = 0


Query: 2   RSIPREFRPNRGRNERRFDSEGDESSSDCGDIDGVGNEEGFDYRALPHELIAKRLARAQI 61
           RSIPR F+PN      +F+   D+   D  + +    EEG + R  PHELIAKRL RAQI
Sbjct: 94  RSIPRWFKPNGSETPWKFNC--DDGVVDESEEEEEEEEEGLEERVPPHELIAKRLVRAQI 153

Query: 62  SSFSVVEGVGRTLKGRDLSRVRNVVLIKTGFLE 95
           SSFSV+EGVGRTLKGRDLS+VRN VL KTGFLE
Sbjct: 154 SSFSVLEGVGRTLKGRDLSKVRNAVLTKTGFLE 184

[Close]

BLAST of Sed0010567 vs. ExPASy TrEMBL
Match: A0A6J5UP07 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS27802 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.8e-16
Identity = 48/71 (67.61%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 24  DESSSDCGDIDGVGNEEGFDYRALPHELIAKRLARAQISSFSVVEGVGRTLKGRDLSRVR 83
           +E   D GD D    EE +D +  PHE IA+RLAR+QISSFSVVEG GRTLKGRDLS+VR
Sbjct: 155 EEVGDDDGDSDDDDEEEDYDSKVPPHEFIARRLARSQISSFSVVEGAGRTLKGRDLSKVR 214

Query: 84  NVVLIKTGFLE 95
           N VL KTGFLE
Sbjct: 215 NAVLTKTGFLE 225

[Close]

BLAST of Sed0010567 vs. TAIR 10
Match: AT4G21970.1 (Protein of unknown function, DUF584 )

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-15
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 48  PHELIAKRLARAQISSFSVVEGVGRTLKGRDLSRVRNVVLIKTGFLE 95
           PHEL+AKRLAR QISSFS+ EG+GRTLKGRDLS+ RN VL +TGFLE
Sbjct: 99  PHELVAKRLARTQISSFSMCEGIGRTLKGRDLSKTRNAVLTRTGFLE 145

[Close]

BLAST of Sed0010567 vs. TAIR 10
Match: AT4G04630.1 (Protein of unknown function, DUF584 )

HSP 1 Score: 78.2 bits (191), Expect = 4.1e-15
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 48  PHELIAKRLARAQISSFSVVEGVGRTLKGRDLSRVRNVVLIKTGFLE 95
           PHE +A++LAR QISSFS+ EGVGRTLKGRDLS+VRN VL KTGFLE
Sbjct: 122 PHEWVARKLARTQISSFSMCEGVGRTLKGRDLSKVRNAVLSKTGFLE 168

[Close]

BLAST of Sed0010567 vs. TAIR 10
Match: AT3G45210.1 (Protein of unknown function, DUF584 )

HSP 1 Score: 63.9 bits (154), Expect = 7.9e-11
Identity = 31/57 (54.39%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 38  NEEGFDYRALPHELIAKRLARAQISSFSVVEGVGRTLKGRDLSRVRNVVLIKTGFLE 95
           +++G + +  PHE +AK     +++SFSV EG+GRTLKGRD+SRVRN +L KTGFL+
Sbjct: 96  DDDGGEGKLPPHEYLAK----TRMASFSVHEGIGRTLKGRDMSRVRNAILEKTGFLD 148

[Close]

BLAST of Sed0010567 vs. TAIR 10
Match: AT3G15040.1 (Protein of unknown function, DUF584 )

HSP 1 Score: 62.4 bits (150), Expect = 2.3e-10
Identity = 27/47 (57.45%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 48  PHELIAKRLARAQISSFSVVEGVGRTLKGRDLSRVRNVVLIKTGFLE 95
           PHE++A+ LA++ + S SV+EG GRTLKGRDL +VRN V  +TGF++
Sbjct: 197 PHEIVARSLAQSSLLSCSVLEGAGRTLKGRDLRQVRNAVFRRTGFID 243

[Close]

BLAST of Sed0010567 vs. TAIR 10
Match: AT5G60680.1 (Protein of unknown function, DUF584 )

HSP 1 Score: 61.2 bits (147), Expect = 5.1e-10
Identity = 40/86 (46.51%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 7   EFRPNRGRNERRFDSEGDESSSDCGDIDGVGNEEGFDYRALPHELIAKRLARAQISSFSV 66
           E+R NR R+    D + D+            NE+G D+   PHE +AK     +++SFSV
Sbjct: 93  EYRDNRRRSIEDNDDDDDD------------NEDGGDWLP-PHEFLAK----TRMASFSV 152

Query: 67  VEGVGRTLKGRDLSRVRNVVLIKTGF 93
            EGVGRTLKGRDLSRVRN +  K GF
Sbjct: 153 HEGVGRTLKGRDLSRVRNAIFEKFGF 161

The following BLAST results are available for this feature:

BLAST of Sed0010567 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6592046.1	1.6e-21	68.09	hypothetical protein SDJN03_14392, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7024924.1	1.6e-21	68.09	hypothetical protein SDJN02_13744, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022936189.1	2.1e-21	70.21	uncharacterized protein LOC111442861 [Cucurbita moschata]	[more]
XP_023536166.1	3.6e-21	69.15	uncharacterized protein LOC111797411 [Cucurbita pepo subsp. pepo]	[more]
XP_022139627.1	2.3e-20	66.67	uncharacterized protein LOC111010482 [Momordica charantia]	[more]

BLAST of Sed0010567 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0010567 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F7L6	1.0e-21	70.21	uncharacterized protein LOC111442861 OS=Cucurbita moschata OX=3662 GN=LOC1114428...	[more]
A0A6J1CEH3	1.1e-20	66.67	uncharacterized protein LOC111010482 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A6J1FSC1	7.2e-20	63.44	uncharacterized protein LOC111446424 OS=Cucurbita moschata OX=3662 GN=LOC1114464...	[more]
A0A6J1IX28	3.0e-18	61.29	uncharacterized protein LOC111480685 OS=Cucurbita maxima OX=3661 GN=LOC111480685...	[more]
A0A6J5UP07	2.8e-16	67.61	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS27802 PE=4 S...	[more]

BLAST of Sed0010567 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21970.1	1.1e-15	78.72	Protein of unknown function, DUF584	[more]
AT4G04630.1	4.1e-15	78.72	Protein of unknown function, DUF584	[more]
AT3G45210.1	7.9e-11	54.39	Protein of unknown function, DUF584	[more]
AT3G15040.1	2.3e-10	57.45	Protein of unknown function, DUF584	[more]
AT5G60680.1	5.1e-10	46.51	Protein of unknown function, DUF584	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007608	Senescence regulator S40	PFAM	PF04520	Senescence_reg	coord: 29..94 e-value: 8.7E-22 score: 78.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	PANTHER	PTHR33083:SF82	CYTOSKELETON-REGULATORY COMPLEX PROTEIN END3, PUTATIVE ISOFORM 9-RELATED	coord: 34..94
None	No IPR available	PANTHER	PTHR33083	EXPRESSED PROTEIN	coord: 34..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010567.1	Sed0010567.1	mRNA