Sed0010524 (gene) Chayote v1

Overview
NameSed0010524
Typegene
OrganismSechium edule (Chayote v1)
Descriptionheat stress transcription factor A-8
LocationLG04: 2304499 .. 2308348 (+)
RNA-Seq ExpressionSed0010524
SyntenySed0010524
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAGATGCCAAAGCCAATGCGGGGAAGCCGCTCGAAAACCAACAAACAACACAAACACACACAGATAAACCCTCGAAATTCCCCGAACCCTTTTCTTGTGCCTTTCCTCTCGATCGCGCTTCCAAATCTCATCGATCTTCGAGAATTTTTTGCGATGGTGAAATCCACGGCGGAGCGGCAGGGATCCGCGGTGGCGCCGTTCCTGAAGAAACTGTACGACATGGTCGACGACGAGGCCACCGATTCCATCATCTCCTGGAGTTCTTCCCATGATAGCTTTGCGATCGTGGATATGACTCAGTTCTCTGTTCATTTGCTTCCCAAGTACTTTAAGCACAACAATTTCTCTAGCTTTATGCGCCAGCTTAATATCTATGTGAGTTTGATTTCGTGTTTTCGTTTTTCAGCCTCTTAAGAGTGGAATTTGTTCTGAAAAATGTTCGTATTCCTTGTTTATGATGTTATTGTTTGCTGTGTTTGAAATCTGATTGAGTTGTGACATTGCTTTGCGATGGACTGTCTTGTTTTAGTGGTTGCCCTAATTGCGAATGAAGCAATGCAGGTTTCGTGAACTGACCGGAGTTATTTTGAAGATTCACTTTGAAAAGGCTTAGGGCAATGTTCATTCGGGCATAATTGAAGTTCTTCATTTCTAGAATATATAAAATAAGAGTAATTGGTCCTAAAGGAGTAAAGTTTGGGTGTGAAGGTGTGTTCCCCTCAAGGTCTCTGGTTCGAGACTCATTGTGACATTAGTTTGTAGAAACCTCTGGTATTTCCATACCTTCGATGTCTTCTGGTGTCCCGTCTAGGGATGGGTGTGCTTACCTCGGGTATAATGGAGCGAAGCTTCGATTTTCCGATTTCAAAAAAAACAAAACAAAAACAAGAGTAATTGACAGAGTGAGGTTAGTTAAGAAGTTATAATCCCCTCCATCCATTGGTGAACTTAAAAAAAAAACGATTACAACCTTTTTTTTATATCCTTGTGTGTTTGGACCAACTTAGGTCATTTCAATGATTCATAGCTTAAATAGATCATAAACCTCTCCTTTCATGCTTATAACGTAAACATTTATTTTTTGTTTTGATTAATGGTAAGCTTTGGGGTAGAATTTTGCCTCTAGACAGGAAGTCTTTAGTTCCCTTCTTTTATTTCTACAATTTTCTTTTGATATTATATCATCAACAAAAACTGTGCAAATCTTGTTTTTCCATTATACAGTAGTTGCTGAATAACACAATCAATTTCTTAGAATCAGCTTGCTTGGGGCTCAGTTACAGGTGATGGCACGGTACATGATATAGTTACCATCATTTTTTCTGCAAATTCTCTATCATCATATTCTTGCAATAAATTTCAGTTGGAAGATCGATGGAATCTTTATTTCCATCCACAAGTGCAAGTTGATTGTTGTTGATATAGTCATTAGGACTTGTGCCCTAAGTTGGGAGAAATTGTAGTATTTTAAAGGAGTAGCTCTAGCTTGTGGGTGACGATGCTATTGGACTGAAGGGGCTTACAAATCCATGTAGATTTTAAAAGTTGCCTATTGTCAAAAGGGGGTTTTACAGGAGTTTCATTTTCGGGGTTTTGACATTCTCAAGAGGGCTTAGGCGCTTAGTTAATCTTTTTTTGCCATAAAAAGAGCATTATATGTAGGGGGTACTAGGTAAGTTTTTTTTTAAACAAGGGTAACCACACCCATCCCTAGGCCAGGCACCGGAGACTTCGAAGGAGTAATATCACAGGTGAGTCTCGAACCTGGGATCTTGAGAGGAGCATACCCTCAAAGCTCAAGTCTTCAACCACTGTGCCACTCCTTGGGGACGCAAGGTTTATAGTTACTAAGTGAAACCCAATTTCATTGAAGTGATTTCTAATGGATTCTTGCAGGTTGCCAATGAAACGGTCTTGTGTATTAGTTGATAAAACTCATCAAAATACTCGCATATTGTTCGATTGCTAAGCAACCAGCTAAACACAGTTTTTCTGTTGTGTTCAAATTCTCATAAAATAGTTTCCTACTGCTTGTAGACTCCAGAAAATTTTCTATGCGATGGCATTGATCATAATATGGTAGATCAATCTTTAGCTTGTATTTTTTGGCTGAACATTTGTAATGTTTTCTTGGTCCTAAACTTGTTGCACTTCCCAAAATATACATCTTCAAATTCTTCTTGTGTTTCACTCTTTAGTTTCTGGTTCATGGATGAGCCTCATGGCTTCCATACAGAGACAAAAAGGAACTAATCAGATTTTGGTAACCAGAAGTATAGGAACAGACTACAAGTGTCATTATTTCGTTTTTTCCTTTTGTCTCTTTTCCTTTTAATTTTATTCCGGAGACTATTATTCCTAAAGTAGTTTCAGTCACTTTTCCTTTTAATTTTATTCCGGAGACTATTATTCATAAAGTAGTTTCAGTCAACTTTATTTGTTGTGATTCATTTTACACGTTATTAGGCCCTTGTGGAAAACGGGAAATTTCTTAACATAAATGCAAACAAGAGGAGAAACAGCTACATTTTCCCCTCACTACGGACATTGTTTTGAATGGTTAAATGTTAATTATAACCAGTGGATCCTTACAATATTTCAGGGTTTTCGGAAAATCGATACGGATTGCTGGGAATTTGCAAATGATGGATTTGTTAAAGGACAAAAACATCTGTTGAAGAACATCAACCGCAGGAAGAACATCCAGGGCACAGATCAGCGTAAAGCGCCACCGCCCCCAGACAATTCTAAAGGACAAGGCGAAGTACACGATTATACAGGGCTGTGGAAAGAAGTTGAGAATCTTAAAATAGATAAAAATGCTGTGATGCAGGAATTGGTTAAACTTAAGCAGCAGCAGGAAATTTCAGAGAGCAAATTGCTCCTATTGAGAGACGGCCTTCAAGGAATGGAAAAGAATCAACAGCAGATGCTGTCATTCTTAGTAATGGCAGTGCAAAGCCCTGGATTTTTGGTCCAGTTTCTTCAACCGAAAGAGAAGAATTGGCGCATGGCGGATGCCGATAATATGCTAGAACAGCTACCTGATGATAATCAAGTACCTTCAAATGGTATGATAGTCAGGTACCAACCTCCTATACACGAACTGCCAGCGGCTCTACTTCCACCAGTGTCGAGTCCAGTGAAACAACAAGAATTTGATCCATTCCCGGATGGAATGAAAGAATTTTTCCTTAATTCCGACTTCATGAAAGTGCTTATGGATGAAAAGTTGGACAATCACAATCAATTTGTTCTTCCAGACGTACAAGATGTCGGATGGGAGCAGCTTCTTCTAGCCAGCCCGTTTTCTTGGAATTCAGATAATCATAGAAAAGTTGACGACGAAAGCGAAGCTGCAGATTATGAAGACCACTCGGACCATGAACTGGATATGGAAACCATCGATACTCGAACTCATGAAGAGAAGTCGGATTTCGAACTTCTAATCAGACAAATGGAGAGCGATGAAAGTTTTGAGATGCAACCAAGGCAGGAGGAATCCTACTTCGTGAAATCGAATGCGGATAGTCTACTAATTGAGGAGATGGAAATTTCGGCATCCGATCAAGAAATCCTATGCGAAACACTAGATAAAATGCTGGCCCGTTAAAAAATGACACGTATTCGTCCAGTTCATATTACTTCATCGATTAGAAATCTCAAAGATCAATATAAGTTTCTTTTTGTCATCACAATATACACTAAATGTAACCATTGGTTGGCTGTGAAGCTATGGTGATAAGCTGCTGCAATTTCAATGTCTTGAGCAGAGAATTGAACTTCAAACGAGTTAATGGAATTTCAGCCTTCTTTTCATTCAATTTTCAAGCATTATATCTTGTGGGC

mRNA sequence

GCAGATGCCAAAGCCAATGCGGGGAAGCCGCTCGAAAACCAACAAACAACACAAACACACACAGATAAACCCTCGAAATTCCCCGAACCCTTTTCTTGTGCCTTTCCTCTCGATCGCGCTTCCAAATCTCATCGATCTTCGAGAATTTTTTGCGATGGTGAAATCCACGGCGGAGCGGCAGGGATCCGCGGTGGCGCCGTTCCTGAAGAAACTGTACGACATGGTCGACGACGAGGCCACCGATTCCATCATCTCCTGGAGTTCTTCCCATGATAGCTTTGCGATCGTGGATATGACTCAGTTCTCTGTTCATTTGCTTCCCAAGTACTTTAAGCACAACAATTTCTCTAGCTTTATGCGCCAGCTTAATATCTATGGTTTTCGGAAAATCGATACGGATTGCTGGGAATTTGCAAATGATGGATTTGTTAAAGGACAAAAACATCTGTTGAAGAACATCAACCGCAGGAAGAACATCCAGGGCACAGATCAGCGTAAAGCGCCACCGCCCCCAGACAATTCTAAAGGACAAGGCGAAGTACACGATTATACAGGGCTGTGGAAAGAAGTTGAGAATCTTAAAATAGATAAAAATGCTGTGATGCAGGAATTGGTTAAACTTAAGCAGCAGCAGGAAATTTCAGAGAGCAAATTGCTCCTATTGAGAGACGGCCTTCAAGGAATGGAAAAGAATCAACAGCAGATGCTGTCATTCTTAGTAATGGCAGTGCAAAGCCCTGGATTTTTGGTCCAGTTTCTTCAACCGAAAGAGAAGAATTGGCGCATGGCGGATGCCGATAATATGCTAGAACAGCTACCTGATGATAATCAAGTACCTTCAAATGGTATGATAGTCAGGTACCAACCTCCTATACACGAACTGCCAGCGGCTCTACTTCCACCAGTGTCGAGTCCAGTGAAACAACAAGAATTTGATCCATTCCCGGATGGAATGAAAGAATTTTTCCTTAATTCCGACTTCATGAAAGTGCTTATGGATGAAAAGTTGGACAATCACAATCAATTTGTTCTTCCAGACGTACAAGATGTCGGATGGGAGCAGCTTCTTCTAGCCAGCCCGTTTTCTTGGAATTCAGATAATCATAGAAAAGTTGACGACGAAAGCGAAGCTGCAGATTATGAAGACCACTCGGACCATGAACTGGATATGGAAACCATCGATACTCGAACTCATGAAGAGAAGTCGGATTTCGAACTTCTAATCAGACAAATGGAGAGCGATGAAAGTTTTGAGATGCAACCAAGGCAGGAGGAATCCTACTTCGTGAAATCGAATGCGGATAGTCTACTAATTGAGGAGATGGAAATTTCGGCATCCGATCAAGAAATCCTATGCGAAACACTAGATAAAATGCTGGCCCGTTAAAAAATGACACGTATTCGTCCAGTTCATATTACTTCATCGATTAGAAATCTCAAAGATCAATATAAGTTTCTTTTTGTCATCACAATATACACTAAATGTAACCATTGGTTGGCTGTGAAGCTATGGTGATAAGCTGCTGCAATTTCAATGTCTTGAGCAGAGAATTGAACTTCAAACGAGTTAATGGAATTTCAGCCTTCTTTTCATTCAATTTTCAAGCATTATATCTTGTGGGC

Coding sequence (CDS)

ATGCCAAAGCCAATGCGGGGAAGCCGCTCGAAAACCAACAAACAACACAAACACACACAGATAAACCCTCGAAATTCCCCGAACCCTTTTCTTGTGCCTTTCCTCTCGATCGCGCTTCCAAATCTCATCGATCTTCGAGAATTTTTTGCGATGGTGAAATCCACGGCGGAGCGGCAGGGATCCGCGGTGGCGCCGTTCCTGAAGAAACTGTACGACATGGTCGACGACGAGGCCACCGATTCCATCATCTCCTGGAGTTCTTCCCATGATAGCTTTGCGATCGTGGATATGACTCAGTTCTCTGTTCATTTGCTTCCCAAGTACTTTAAGCACAACAATTTCTCTAGCTTTATGCGCCAGCTTAATATCTATGGTTTTCGGAAAATCGATACGGATTGCTGGGAATTTGCAAATGATGGATTTGTTAAAGGACAAAAACATCTGTTGAAGAACATCAACCGCAGGAAGAACATCCAGGGCACAGATCAGCGTAAAGCGCCACCGCCCCCAGACAATTCTAAAGGACAAGGCGAAGTACACGATTATACAGGGCTGTGGAAAGAAGTTGAGAATCTTAAAATAGATAAAAATGCTGTGATGCAGGAATTGGTTAAACTTAAGCAGCAGCAGGAAATTTCAGAGAGCAAATTGCTCCTATTGAGAGACGGCCTTCAAGGAATGGAAAAGAATCAACAGCAGATGCTGTCATTCTTAGTAATGGCAGTGCAAAGCCCTGGATTTTTGGTCCAGTTTCTTCAACCGAAAGAGAAGAATTGGCGCATGGCGGATGCCGATAATATGCTAGAACAGCTACCTGATGATAATCAAGTACCTTCAAATGGTATGATAGTCAGGTACCAACCTCCTATACACGAACTGCCAGCGGCTCTACTTCCACCAGTGTCGAGTCCAGTGAAACAACAAGAATTTGATCCATTCCCGGATGGAATGAAAGAATTTTTCCTTAATTCCGACTTCATGAAAGTGCTTATGGATGAAAAGTTGGACAATCACAATCAATTTGTTCTTCCAGACGTACAAGATGTCGGATGGGAGCAGCTTCTTCTAGCCAGCCCGTTTTCTTGGAATTCAGATAATCATAGAAAAGTTGACGACGAAAGCGAAGCTGCAGATTATGAAGACCACTCGGACCATGAACTGGATATGGAAACCATCGATACTCGAACTCATGAAGAGAAGTCGGATTTCGAACTTCTAATCAGACAAATGGAGAGCGATGAAAGTTTTGAGATGCAACCAAGGCAGGAGGAATCCTACTTCGTGAAATCGAATGCGGATAGTCTACTAATTGAGGAGATGGAAATTTCGGCATCCGATCAAGAAATCCTATGCGAAACACTAGATAAAATGCTGGCCCGTTAA

Protein sequence

MPKPMRGSRSKTNKQHKHTQINPRNSPNPFLVPFLSIALPNLIDLREFFAMVKSTAERQGSAVAPFLKKLYDMVDDEATDSIISWSSSHDSFAIVDMTQFSVHLLPKYFKHNNFSSFMRQLNIYGFRKIDTDCWEFANDGFVKGQKHLLKNINRRKNIQGTDQRKAPPPPDNSKGQGEVHDYTGLWKEVENLKIDKNAVMQELVKLKQQQEISESKLLLLRDGLQGMEKNQQQMLSFLVMAVQSPGFLVQFLQPKEKNWRMADADNMLEQLPDDNQVPSNGMIVRYQPPIHELPAALLPPVSSPVKQQEFDPFPDGMKEFFLNSDFMKVLMDEKLDNHNQFVLPDVQDVGWEQLLLASPFSWNSDNHRKVDDESEAADYEDHSDHELDMETIDTRTHEEKSDFELLIRQMESDESFEMQPRQEESYFVKSNADSLLIEEMEISASDQEILCETLDKMLAR
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6599929.16.2e-18082.11Heat stress transcription factor A-8, partial [Cucurbita argyrosperma subsp. sor... [more]
XP_023536181.12.6e-17881.86heat stress transcription factor A-8-like isoform X1 [Cucurbita pepo subsp. pepo... [more]
XP_022942461.14.4e-17881.86heat stress transcription factor A-8-like isoform X1 [Cucurbita moschata][more]
XP_022995879.11.3e-17781.62heat stress transcription factor A-8-like isoform X1 [Cucurbita maxima][more]
XP_038892281.11.0e-17479.18heat stress transcription factor A-8 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Q9S7U57.3e-7545.45Heat stress transcription factor A-8 OS=Arabidopsis thaliana OX=3702 GN=HSFA8 PE... [more]
Q401521.5e-5947.86Heat shock factor protein HSF8 OS=Solanum lycopersicum OX=4081 GN=HSF8 PE=3 SV=1[more]
P411531.5e-5947.86Heat shock factor protein HSF8 OS=Solanum peruvianum OX=4082 GN=HSF8 PE=2 SV=1[more]
Q84T613.6e-5846.52Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica OX=39947 GN... [more]
P411512.6e-5649.42Heat stress transcription factor A-1a OS=Arabidopsis thaliana OX=3702 GN=HSFA1A ... [more]
Match NameE-valueIdentityDescription
A0A6J1FNX42.1e-17881.86heat stress transcription factor A-8-like isoform X1 OS=Cucurbita moschata OX=36... [more]
A0A6J1K7546.2e-17881.62heat stress transcription factor A-8-like isoform X1 OS=Cucurbita maxima OX=3661... [more]
A0A1S3CMJ81.3e-17078.29heat stress transcription factor A-8 OS=Cucumis melo OX=3656 GN=LOC103502515 PE=... [more]
A0A0A0KMJ24.2e-16677.94HSF_DOMAIN domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G025910 ... [more]
A0A0S2IAH37.7e-16076.37Heat stress transcription factor A-8 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
Match NameE-valueIdentityDescription
AT1G67970.15.2e-7645.45heat shock transcription factor A8 [more]
AT4G17750.11.9e-5749.42heat shock factor 1 [more]
AT1G32330.15.1e-5540.17heat shock transcription factor A1D [more]
AT5G16820.13.6e-5343.75heat shock factor 3 [more]
AT5G16820.23.6e-5343.75heat shock factor 3 [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 189..209
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 153..179
NoneNo IPR availablePANTHERPTHR10015:SF325HEAT STRESS TRANSCRIPTION FACTOR A-8coord: 51..393
IPR000232Heat shock factor (HSF)-type, DNA-bindingPRINTSPR00056HSFDOMAINcoord: 66..89
score: 46.67
coord: 117..129
score: 76.26
coord: 104..116
score: 81.98
IPR000232Heat shock factor (HSF)-type, DNA-bindingSMARTSM00415hsfneu3coord: 62..155
e-value: 2.3E-52
score: 190.0
IPR000232Heat shock factor (HSF)-type, DNA-bindingPFAMPF00447HSF_DNA-bindcoord: 66..155
e-value: 4.1E-31
score: 107.5
IPR000232Heat shock factor (HSF)-type, DNA-bindingPROSITEPS00434HSF_DOMAINcoord: 105..129
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 58..156
e-value: 1.6E-35
score: 123.7
IPR027725Heat shock transcription factor familyPANTHERPTHR10015HEAT SHOCK TRANSCRIPTION FACTORcoord: 51..393
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 61..155

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0010524.1Sed0010524.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034605 cellular response to heat
biological_process GO:0006357 regulation of transcription by RNA polymerase II
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function GO:0043565 sequence-specific DNA binding