Sed0010413 (gene) Chayote v1

Overview


Name	Sed0010413
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Protein kinase domain-containing protein
Location	LG11: 7701283 .. 7703581 (-)
RNA-Seq Expression	Sed0010413
Synteny	Sed0010413

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTAAGTTCTTAAAAGGAGTGGTGGGTGGATCTGAGACCGGCCTTAAAGATTTCCCCTATTATAATCAGCCTGGGACTCCTGGACTCACTTCCGTGGTACCTCTAAGGTATATCTTTTAATATGATAAGTAGTCGCTTGAGCATGAACATGATTTTTTCTTTGACATTGCAGATTTCTGAATTATGGTTTGTTCAATGTTAAGTGATTTGTAATGAATTTAGTATTGTGATGGGGCTTGATCTTGTAGTTTGGGAATTGTCCATCCTTTTCCTAGTTAGTTTCTTACTGTTTGGGTTGGTAGGTGTGGCATCCTATTTATGGGGGTGAAGTTTCATTGGCTTACATTTGACAAATTTGAGTTTGCTTGTGTTTTGGTTTTCATTGCTCAACTTGGTCCAGCTAGTTTCTAATGAGGTAGGCAAATGAACTCTCGAAACTTTTCTACGTTGATGCTAGCATGAGGTCCTTACACACAAAGGGTTATCATTTCTTGGTTTCTTTAAATAGAAACTTGACCTAAAACTTAGGGAAAGACGGACATTAGGCTGAGAAGTTCTTTGAGCCTGTGGGGATAAAGTGCTTATTTTTCACTTTATGGTGGTCAATGAGGGTTTCATTTTTCAATTTCGAACTTACATTGGCTTCCATATATGTTGAATAGGGATTTTCTTAGTTAGAAAATTTCTCAGCCCTTTTTCTTGCAATCATTCTTTTTACATGTTTTTTTTAGATATTTTTGAGGATTTGATATTCTATGTATTATATATATTTGGATAAAATCAATGGAAAGATAGGATGTTTTTCCTCAATTTCTCTAAATCTAACACATACTTGCTGGCTCACAATAACCTTATGTCAAAGAGAAGTGGGCTCATGAGGAAAATGCGAAAAGGGATACATTTGGAAATGAAGAATGATTAGCCAAGAAGAAAAAAAAAGACATGCGAAAAGGCATTAGCTAGGTTGGGCTTAAACAACAATCATCCCTATGCTCAAAATCATAACGAAACTCCCCCAGTAAAGAAAGCAAAGTGGCAACACTACCTTATATCGAACAAAAGACACTGGAAACTGAAAACGAGTGAAGAGGTCCCGAATGAGCCAAAACATCAGCCACAAAAAGATGCTTCTATCTACCACCCGTGTCTTCCTAGAAAAAAAAGTATCCTTCCCATCCCCCTCTATAAAATAAACAAAACTGGAAAGAAGGGATACTCCTCATCAATGTATTTCCAAGGATTTATAGAAGTGTCCTGAATCCCACATACGAAGGCCACTCAAAAGGTAGCGGTCCATACTGATAGGAATTATATTAGATTAATGTAATTTAAAGTAGTTAAATATTGTTCGATAACTATCATGGAATGACCCAGTGGTCAAGAGGGTTCTGAGGAGCTAAGAGTTAATGAATTCAATTCATGGTGGACACCTACCTTGGAATAAATTTCCTACTGGTTTTCTTGACATCTAAATGTTTGAGGGTCAAACGGTATGTCTCATGACAATAGTCGAAGTGCGGGCGAGCTAGATTGGACAATCACGAATATAAAAAAAAAATATATATATATTGCTAGATATTCTCCAGAATATGTTAGGAGGTTTGTTAGATATTCTCTAGAATTTTATATTCTATGTATTATATATATTTGGGTAAAATCAATGAAAAGATAGAATGTTTTCTCCTCAATTTCTTTAAATTTAACACATGCTTGCTTGCTAATAATAACCTTGTGTCAAAGAGAAGTGGGCTCATGAGGAAAACTCCGTAACAATTTAGCCCACAAGGCTCTTTTTGGTCTAAGTCTTAGATTGCCAGTACCTTAACCCCCACACCAAAAATCCTGTGAAACCTCTAGTATATTAGTTTTGCTAGCTGGTTTATATGACATCTATATGGATGATATTTGGATCTATTTTTGGGTTTTTGGTCTAACTTATTCGTCTCTTTTGTTCAAGTGATAACTCCTAAAAAATTTTGGGCTCATATTTTCACCTCTTCTATTTTATGTCATCTCTATCGTCTTAAATTTTTAGTTTAATTGAAGTTAATGTAAGATTGGTTTCATTTTTCAGGATAATGGGTTTCCAGTATCTGTATTTTCTCTTTCAGGGAGTAATGCGGAGGATGAACATTTGGCTGCAGGCCGCAAGGTTGTAAAGTGGCTGCGAACGAACTGTAAGGTGCCAATATCTATTCTTACAGATATGGCTCATAACAATGTACTGTTGTATACCAAAAATGGCATGCGACTTCCTTTCCTATTGGGCCGAAAGCCATTTTCGGATAACAAGTAA

mRNA sequence

ATGTTTAAGTTCTTAAAAGGAGTGGTGGGTGGATCTGAGACCGCCTGGGACTCCTGGACTCACTTCCGTGGTACCTCTAAGGATAATGGGTTTCCAGTATCTGTATTTTCTCTTTCAGGGAGTAATGCGGAGGATGAACATTTGGCTGCAGGCCGCAAGGTTGTAAAGTGGCTGCGAACGAACTGTAAGGTGCCAATATCTATTCTTACAGATATGGCTCATAACAATGTACTGTTGTATACCAAAAATGGCATGCGACTTCCTTTCCTATTGGGCCGAAAGCCATTTTCGGATAACAAGTAA

Coding sequence (CDS)

ATGTTTAAGTTCTTAAAAGGAGTGGTGGGTGGATCTGAGACCGCCTGGGACTCCTGGACTCACTTCCGTGGTACCTCTAAGGATAATGGGTTTCCAGTATCTGTATTTTCTCTTTCAGGGAGTAATGCGGAGGATGAACATTTGGCTGCAGGCCGCAAGGTTGTAAAGTGGCTGCGAACGAACTGTAAGGTGCCAATATCTATTCTTACAGATATGGCTCATAACAATGTACTGTTGTATACCAAAAATGGCATGCGACTTCCTTTCCTATTGGGCCGAAAGCCATTTTCGGATAACAAGTAA

Protein sequence

MFKFLKGVVGGSETAWDSWTHFRGTSKDNGFPVSVFSLSGSNAEDEHLAAGRKVVKWLRTNCKVPISILTDMAHNNVLLYTKNGMRLPFLLGRKPFSDNK

Homology

[Close]

BLAST of Sed0010413 vs. NCBI nr
Match: XP_008460276.1 (PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Cucumis melo] >XP_008460277.1 PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Cucumis melo] >XP_008460278.1 PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 3.6e-16
Identity = 51/75 (68.00%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1  MFKFLKGVVGGSET---------------AWDSWTHFRGTSKDNGFPVSVFSLSGSNAED 60
          MFKFLKGVVGGS T               AW SWTHFRGTSKD+G PVSVFSLSGSNA+D
Sbjct: 1  MFKFLKGVVGGSGTGLKDLPYNIGDPYPSAWGSWTHFRGTSKDDGSPVSVFSLSGSNAQD 60

[Close]

BLAST of Sed0010413 vs. NCBI nr
Match: XP_008460279.1 (PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X2 [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 3.6e-16
Identity = 51/75 (68.00%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1  MFKFLKGVVGGSET---------------AWDSWTHFRGTSKDNGFPVSVFSLSGSNAED 60
          MFKFLKGVVGGS T               AW SWTHFRGTSKD+G PVSVFSLSGSNA+D
Sbjct: 1  MFKFLKGVVGGSGTGLKDLPYNIGDPYPSAWGSWTHFRGTSKDDGSPVSVFSLSGSNAQD 60

[Close]

BLAST of Sed0010413 vs. NCBI nr
Match: TYK07165.1 (putative inactive serine/threonine-protein kinase scy1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 3.6e-16
Identity = 51/75 (68.00%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1  MFKFLKGVVGGSET---------------AWDSWTHFRGTSKDNGFPVSVFSLSGSNAED 60
          MFKFLKGVVGGS T               AW SWTHFRGTSKD+G PVSVFSLSGSNA+D
Sbjct: 1  MFKFLKGVVGGSGTGLKDLPYNIGDPYPSAWGSWTHFRGTSKDDGSPVSVFSLSGSNAQD 60

[Close]

BLAST of Sed0010413 vs. NCBI nr
Match: XP_004144420.1 (probable inactive serine/threonine-protein kinase scy1 isoform X1 [Cucumis sativus] >XP_011651702.1 probable inactive serine/threonine-protein kinase scy1 isoform X1 [Cucumis sativus] >XP_011651703.1 probable inactive serine/threonine-protein kinase scy1 isoform X1 [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 4.7e-16
Identity = 50/75 (66.67%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1  MFKFLKGVVGGSET---------------AWDSWTHFRGTSKDNGFPVSVFSLSGSNAED 60
          MFKFLKGVVGGS T               AW SWTHFRGTSKD+G PVS+FSLSGSNA+D
Sbjct: 1  MFKFLKGVVGGSGTGLKDLPYNIGDPYPSAWGSWTHFRGTSKDDGSPVSIFSLSGSNAQD 60

[Close]

BLAST of Sed0010413 vs. NCBI nr
Match: XP_038889822.1 (probable inactive serine/threonine-protein kinase scy1 [Benincasa hispida])

HSP 1 Score: 94.7 bits (234), Expect = 4.7e-16
Identity = 50/75 (66.67%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1  MFKFLKGVVGGSET---------------AWDSWTHFRGTSKDNGFPVSVFSLSGSNAED 60
          MFKFLKGVVGGS T               AW SWTHFRGTSKD+G PVS+FSLSGSNA+D
Sbjct: 1  MFKFLKGVVGGSGTGLKDLPYNIGDPYPSAWGSWTHFRGTSKDDGSPVSIFSLSGSNAQD 60

[Close]

BLAST of Sed0010413 vs. ExPASy TrEMBL
Match: A0A1S3CCL0 (probable inactive serine/threonine-protein kinase scy1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499151 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.7e-16
Identity = 51/75 (68.00%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1  MFKFLKGVVGGSET---------------AWDSWTHFRGTSKDNGFPVSVFSLSGSNAED 60
          MFKFLKGVVGGS T               AW SWTHFRGTSKD+G PVSVFSLSGSNA+D
Sbjct: 1  MFKFLKGVVGGSGTGLKDLPYNIGDPYPSAWGSWTHFRGTSKDDGSPVSVFSLSGSNAQD 60

[Close]

BLAST of Sed0010413 vs. ExPASy TrEMBL
Match: A0A5D3C6X3 (Putative inactive serine/threonine-protein kinase scy1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G00410 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.7e-16
Identity = 51/75 (68.00%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1  MFKFLKGVVGGSET---------------AWDSWTHFRGTSKDNGFPVSVFSLSGSNAED 60
          MFKFLKGVVGGS T               AW SWTHFRGTSKD+G PVSVFSLSGSNA+D
Sbjct: 1  MFKFLKGVVGGSGTGLKDLPYNIGDPYPSAWGSWTHFRGTSKDDGSPVSVFSLSGSNAQD 60

[Close]

BLAST of Sed0010413 vs. ExPASy TrEMBL
Match: A0A1S3CBP3 (probable inactive serine/threonine-protein kinase scy1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499151 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.7e-16
Identity = 51/75 (68.00%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1  MFKFLKGVVGGSET---------------AWDSWTHFRGTSKDNGFPVSVFSLSGSNAED 60
          MFKFLKGVVGGS T               AW SWTHFRGTSKD+G PVSVFSLSGSNA+D
Sbjct: 1  MFKFLKGVVGGSGTGLKDLPYNIGDPYPSAWGSWTHFRGTSKDDGSPVSVFSLSGSNAQD 60

[Close]

BLAST of Sed0010413 vs. ExPASy TrEMBL
Match: A0A6J1K7E5 (N-terminal kinase-like protein OS=Cucurbita maxima OX=3661 GN=LOC111491833 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.3e-16
Identity = 50/75 (66.67%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1  MFKFLKGVVGGSET---------------AWDSWTHFRGTSKDNGFPVSVFSLSGSNAED 60
          MFKFLKGVVGGS T               AW SWTHFRGTSKD+G PVS+FSLSGSNA+D
Sbjct: 1  MFKFLKGVVGGSGTGLKDLPYNIGDPYPSAWGSWTHFRGTSKDDGSPVSIFSLSGSNAQD 60

[Close]

BLAST of Sed0010413 vs. ExPASy TrEMBL
Match: A0A6J1EUR3 (N-terminal kinase-like protein OS=Cucurbita moschata OX=3662 GN=LOC111436120 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.3e-16
Identity = 50/75 (66.67%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1  MFKFLKGVVGGSET---------------AWDSWTHFRGTSKDNGFPVSVFSLSGSNAED 60
          MFKFLKGVVGGS T               AW SWTHFRGTSKD+G PVS+FSLSGSNA+D
Sbjct: 1  MFKFLKGVVGGSGTGLKDLPYNIGDPYPSAWGSWTHFRGTSKDDGSPVSIFSLSGSNAQD 60

[Close]

BLAST of Sed0010413 vs. TAIR 10
Match: AT2G40730.1 (Protein kinase family protein with ARM repeat domain )

HSP 1 Score: 88.6 bits (218), Expect = 3.1e-18
Identity = 46/75 (61.33%), Postives = 52/75 (69.33%), Query Frame = 0


Query: 1  MFKFLKGVVGGSET---------------AWDSWTHFRGTSKDNGFPVSVFSLSGSNAED 60
          MFKFLKGVV GS T               AW SW+HFRGTSKD+G PVS+F+LSG+NA+D
Sbjct: 1  MFKFLKGVVAGSGTGLKDLPYNIGDPYPSAWGSWSHFRGTSKDDGSPVSIFALSGNNAQD 60

The following BLAST results are available for this feature:

BLAST of Sed0010413 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460276.1	3.6e-16	68.00	PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Cu...	[more]
XP_008460279.1	3.6e-16	68.00	PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X2 [Cu...	[more]
TYK07165.1	3.6e-16	68.00	putative inactive serine/threonine-protein kinase scy1 isoform X1 [Cucumis melo ...	[more]
XP_004144420.1	4.7e-16	66.67	probable inactive serine/threonine-protein kinase scy1 isoform X1 [Cucumis sativ...	[more]
XP_038889822.1	4.7e-16	66.67	probable inactive serine/threonine-protein kinase scy1 [Benincasa hispida]	[more]

BLAST of Sed0010413 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0010413 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CCL0	1.7e-16	68.00	probable inactive serine/threonine-protein kinase scy1 isoform X1 OS=Cucumis mel...	[more]
A0A5D3C6X3	1.7e-16	68.00	Putative inactive serine/threonine-protein kinase scy1 isoform X1 OS=Cucumis mel...	[more]
A0A1S3CBP3	1.7e-16	68.00	probable inactive serine/threonine-protein kinase scy1 isoform X2 OS=Cucumis mel...	[more]
A0A6J1K7E5	2.3e-16	66.67	N-terminal kinase-like protein OS=Cucurbita maxima OX=3661 GN=LOC111491833 PE=4 ...	[more]
A0A6J1EUR3	2.3e-16	66.67	N-terminal kinase-like protein OS=Cucurbita moschata OX=3662 GN=LOC111436120 PE=...	[more]

BLAST of Sed0010413 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40730.1	3.1e-18	61.33	Protein kinase family protein with ARM repeat domain	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.200.20	Phosphorylase Kinase; domain 1	coord: 6..82 e-value: 8.1E-7 score: 30.9
None	No IPR available	PANTHER	PTHR12984:SF21	SUBFAMILY NOT NAMED	coord: 13..65
None	No IPR available	PANTHER	PTHR12984	SCY1-RELATED S/T PROTEIN KINASE-LIKE	coord: 13..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010413.1	Sed0010413.1	mRNA