Sed0010265 (gene) Chayote v1

Overview


Name	Sed0010265
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Clavata3/ESR (CLE) gene family member
Location	LG12: 32118267 .. 32118602 (-)
RNA-Seq Expression	Sed0010265
Synteny	Sed0010265

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCCCAAATCATCTACTTTTAAAATAAGTAATGCAGCAATGAAGCTGGCTCAGTCAAGTATTTTGGTGCTTTCGCTATCGGTCTTCGTCTTCATTGGGTCCGTCGTTGGAGCTCGAAAGATGTTGTTTTCGGCTCACGATGGTGCCGGGGACAACAACAGCTTGACGACTACACTGGGGATCACCCGAAGGTGCAAATCAAAGAACCTACATTGTTGTGAGTGCTTCTTCTCAATCTCAAGCTCTGAGAAGATGATCAACAATAATGCTACCAATTCTGAGGATCAGAAAAGAGTTGTTCCTACTGGCCCTAACCCACTTCACAATAAGTAG

mRNA sequence

ATGGTTCCCAAATCATCTACTTTTAAAATAAGTAATGCAGCAATGAAGCTGGCTCAGTCAAGTATTTTGGTGCTTTCGCTATCGGTCTTCGTCTTCATTGGGTCCGTCGTTGGAGCTCGAAAGATGTTGTTTTCGGCTCACGATGGTGCCGGGGACAACAACAGCTTGACGACTACACTGGGGATCACCCGAAGGTGCAAATCAAAGAACCTACATTGTTGTGAGTGCTTCTTCTCAATCTCAAGCTCTGAGAAGATGATCAACAATAATGCTACCAATTCTGAGGATCAGAAAAGAGTTGTTCCTACTGGCCCTAACCCACTTCACAATAAGTAG

Coding sequence (CDS)

ATGGTTCCCAAATCATCTACTTTTAAAATAAGTAATGCAGCAATGAAGCTGGCTCAGTCAAGTATTTTGGTGCTTTCGCTATCGGTCTTCGTCTTCATTGGGTCCGTCGTTGGAGCTCGAAAGATGTTGTTTTCGGCTCACGATGGTGCCGGGGACAACAACAGCTTGACGACTACACTGGGGATCACCCGAAGGTGCAAATCAAAGAACCTACATTGTTGTGAGTGCTTCTTCTCAATCTCAAGCTCTGAGAAGATGATCAACAATAATGCTACCAATTCTGAGGATCAGAAAAGAGTTGTTCCTACTGGCCCTAACCCACTTCACAATAAGTAG

Protein sequence

MVPKSSTFKISNAAMKLAQSSILVLSLSVFVFIGSVVGARKMLFSAHDGAGDNNSLTTTLGITRRCKSKNLHCCECFFSISSSEKMINNNATNSEDQKRVVPTGPNPLHNK

Homology

[Close]

BLAST of Sed0010265 vs. NCBI nr
Match: KAG6587715.1 (hypothetical protein SDJN03_16280, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136.7 bits (343), Expect = 1.2e-28
Identity = 75/97 (77.32%), Postives = 82/97 (84.54%), Query Frame = 0


Query: 15  MKLAQSSILVLSLSVFVFIGSVVGARKMLFSAHDGAGDNNSLTTTLGITRRCKSKNLHCC 74
           M+LAQSSILVLSLSVFV IGSVVGARKMLF A D   DNNSLT  +  +RRCKSK L+CC
Sbjct: 1   MRLAQSSILVLSLSVFVCIGSVVGARKMLFLAQDSTRDNNSLTIAMESSRRCKSKKLYCC 60

Query: 75  ECFFSISSSEKMINNNATNSEDQKRVVPTGPNPLHNK 112
           ECFF  SSSEKMI NNAT+S ++KRVVPTGPNPLHNK
Sbjct: 61  ECFF--SSSEKMI-NNATSSSEEKRVVPTGPNPLHNK 94

[Close]

BLAST of Sed0010265 vs. NCBI nr
Match: XP_023003872.1 (putative receptor-like protein kinase At4g00960 [Cucurbita maxima])

HSP 1 Score: 99.4 bits (246), Expect = 2.1e-17
Identity = 57/82 (69.51%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 19  QSSILVLSLSVFVFIGSVVGARKMLFSAHDGAGDNNSLTTTLGITRRCKSKNLHCCECFF 78
           +SSILVLSLSVFV IGSVVGARKMLF A D   DNNSLT  +  +RRCKSK L+CC CFF
Sbjct: 113 RSSILVLSLSVFVCIGSVVGARKMLFLAQDSTRDNNSLTIAMENSRRCKSKKLYCCGCFF 172

Query: 79  SISSSEKMINNNATNSEDQKRV 101
             SSSEK I NNAT+S ++KR+
Sbjct: 173 --SSSEKTI-NNATSSSEEKRL 191

[Close]

BLAST of Sed0010265 vs. NCBI nr
Match: KAA0058189.1 (Clavata3/ESR (CLE) protein [Cucumis melo var. makuwa] >TYK28553.1 Clavata3/ESR (CLE) gene family member [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 8.0e-17
Identity = 68/110 (61.82%), Postives = 74/110 (67.27%), Query Frame = 0


Query: 12  NAAMKLAQSSILVLSLSVFVF-IGSVVGARKMLFSAHDGAGDN-NSLTTTLGIT--RRCK 71
           + AM L++SSILV  LSV V  + SV GARK LF  H+G  DN NSLTTT G T   RCK
Sbjct: 2   SGAMGLSKSSILVFWLSVLVVCVTSVAGARKPLFLGHNGVRDNKNSLTTTPGETTINRCK 61

Query: 72  -SKN----LHCCECFFSISSSEKMI--NNNATNSEDQKRVVPTGPNPLHN 111
            SKN    LHCCECFF  S    M+  NNN TN ED KRVVPTGPNPLHN
Sbjct: 62  YSKNNANDLHCCECFFLSSKKMMMMINNNNGTNFED-KRVVPTGPNPLHN 110

[Close]

BLAST of Sed0010265 vs. NCBI nr
Match: KGN65507.1 (hypothetical protein Csa_019832 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 1.8e-16
Identity = 63/109 (57.80%), Postives = 73/109 (66.97%), Query Frame = 0


Query: 12  NAAMKLAQSSILVLSLSVFVF-IGSVVGARKMLFSAHDGAGDN-NSLTTTLGIT--RRCK 71
           + AM L++SSIL+  LSV V  + SV GARK LF  H+G  DN NSLTTTL  T   RCK
Sbjct: 2   SGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRCK 61

Query: 72  -SKN-----LHCCECFFSISSSEKMINNNATNSEDQKRVVPTGPNPLHN 111
            SKN     LHCCECFF  S    MI+NN   + ++KRVVPTGPNPLHN
Sbjct: 62  YSKNNDVNDLHCCECFFLSSKKMMMIDNNNGTNFEEKRVVPTGPNPLHN 110

[Close]

BLAST of Sed0010265 vs. ExPASy TrEMBL
Match: A0A6J1KNU3 (putative receptor-like protein kinase At4g00960 OS=Cucurbita maxima OX=3661 GN=LOC111497330 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.0e-17
Identity = 57/82 (69.51%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 19  QSSILVLSLSVFVFIGSVVGARKMLFSAHDGAGDNNSLTTTLGITRRCKSKNLHCCECFF 78
           +SSILVLSLSVFV IGSVVGARKMLF A D   DNNSLT  +  +RRCKSK L+CC CFF
Sbjct: 113 RSSILVLSLSVFVCIGSVVGARKMLFLAQDSTRDNNSLTIAMENSRRCKSKKLYCCGCFF 172

Query: 79  SISSSEKMINNNATNSEDQKRV 101
             SSSEK I NNAT+S ++KR+
Sbjct: 173 --SSSEKTI-NNATSSSEEKRL 191

[Close]

BLAST of Sed0010265 vs. ExPASy TrEMBL
Match: A0A5A7UXE2 (Clavata3/ESR (CLE) gene family member OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G002000 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.9e-17
Identity = 68/110 (61.82%), Postives = 74/110 (67.27%), Query Frame = 0


Query: 12  NAAMKLAQSSILVLSLSVFVF-IGSVVGARKMLFSAHDGAGDN-NSLTTTLGIT--RRCK 71
           + AM L++SSILV  LSV V  + SV GARK LF  H+G  DN NSLTTT G T   RCK
Sbjct: 2   SGAMGLSKSSILVFWLSVLVVCVTSVAGARKPLFLGHNGVRDNKNSLTTTPGETTINRCK 61

Query: 72  -SKN----LHCCECFFSISSSEKMI--NNNATNSEDQKRVVPTGPNPLHN 111
            SKN    LHCCECFF  S    M+  NNN TN ED KRVVPTGPNPLHN
Sbjct: 62  YSKNNANDLHCCECFFLSSKKMMMMINNNNGTNFED-KRVVPTGPNPLHN 110

[Close]

BLAST of Sed0010265 vs. ExPASy TrEMBL
Match: A0A0A0LXI1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G433060 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 8.7e-17
Identity = 63/109 (57.80%), Postives = 73/109 (66.97%), Query Frame = 0


Query: 12  NAAMKLAQSSILVLSLSVFVF-IGSVVGARKMLFSAHDGAGDN-NSLTTTLGIT--RRCK 71
           + AM L++SSIL+  LSV V  + SV GARK LF  H+G  DN NSLTTTL  T   RCK
Sbjct: 2   SGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRCK 61

Query: 72  -SKN-----LHCCECFFSISSSEKMINNNATNSEDQKRVVPTGPNPLHN 111
            SKN     LHCCECFF  S    MI+NN   + ++KRVVPTGPNPLHN
Sbjct: 62  YSKNNDVNDLHCCECFFLSSKKMMMIDNNNGTNFEEKRVVPTGPNPLHN 110

[Close]

BLAST of Sed0010265 vs. ExPASy TrEMBL
Match: A0A7N2MU70 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.9e-04
Identity = 37/89 (41.57%), Postives = 50/89 (56.18%), Query Frame = 0


Query: 23  LVLSLSVFVFIGSVVGARKMLFSAHDGAGDNNSLTTTLGITRRCKSKNLHCCECFFSISS 82
           +++  S+F     VV  R  + +A +GA +  S   TL    RC SK LH       +S+
Sbjct: 1   MLMFQSIFAVYIRVV--RMTMLTATNGAKERKSSNETLEAVNRCNSKRLHFRS--EKLSN 60

Query: 83  SEKMINNNATNSEDQKRVVPTGPNPLHNK 112
           SEK   N+   +ED KRVVPTGPNPLHN+
Sbjct: 61  SEKY--NHINTTEDSKRVVPTGPNPLHNR 83

[Close]

BLAST of Sed0010265 vs. ExPASy TrEMBL
Match: G7JT84 (Clavata3/ESR (CLE) gene family member OS=Medicago truncatula OX=3880 GN=MTR_4g126940 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.4e-04
Identity = 41/101 (40.59%), Postives = 53/101 (52.48%), Query Frame = 0


Query: 15  MKLAQSSILVLSLSVFVFIGSVVGARKMLF--SAHDGAGDNNSLTTTL--GITRRCKSKN 74
           MKL Q  ILV+ +  +  IGS   ARK +F  +  DGA   NS +  +      +C  K 
Sbjct: 1   MKL-QEVILVICILFWACIGSTTVARKTVFVGNLFDGAKKKNSSSVAVLDDDVHKCNHKR 60

Query: 75  LHCCECFFSISSSEKMINNNATNSEDQKRVVPTGPNPLHNK 112
            H   C+           NN ++SED KRVVPTGPNPLHN+
Sbjct: 61  KHLSSCY-----------NNTSSSED-KRVVPTGPNPLHNR 88

The following BLAST results are available for this feature:

BLAST of Sed0010265 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6587715.1	1.2e-28	77.32	hypothetical protein SDJN03_16280, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023003872.1	2.1e-17	69.51	putative receptor-like protein kinase At4g00960 [Cucurbita maxima]	[more]
KAA0058189.1	8.0e-17	61.82	Clavata3/ESR (CLE) protein [Cucumis melo var. makuwa] >TYK28553.1 Clavata3/ESR (...	[more]
KGN65507.1	1.8e-16	57.80	hypothetical protein Csa_019832 [Cucumis sativus]	[more]

BLAST of Sed0010265 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0010265 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KNU3	1.0e-17	69.51	putative receptor-like protein kinase At4g00960 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A5A7UXE2	3.9e-17	61.82	Clavata3/ESR (CLE) gene family member OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A0A0LXI1	8.7e-17	57.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G433060 PE=4 SV=1	[more]
A0A7N2MU70	2.9e-04	41.57	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
G7JT84	8.4e-04	40.59	Clavata3/ESR (CLE) gene family member OS=Medicago truncatula OX=3880 GN=MTR_4g12...	[more]

BLAST of Sed0010265 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010265.1	Sed0010265.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity