Sed0010183 (gene) Chayote v1

Overview
NameSed0010183
Typegene
OrganismSechium edule (Chayote v1)
Description60S ribosomal protein L27A
LocationLG01: 11802493 .. 11804553 (+)
RNA-Seq ExpressionSed0010183
SyntenySed0010183
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTGTTCCGAGATCTATAAACTCCATCCAAACCCTAATCCCCATTTCCTCGCGCTCAGCCGCTGCCTGCAACTTCAAAACCCTAAATCTCCACCACTCGCCGGCGAAAATGACGACCCGATTCAAGAAGAACAGGAAGAAGCGCGGCCACGTGAGCGCCGGACACGGTCGTATCGGCAAGCACCGTAAGCATCCCGGCGGTCGCGGTAACGCCGGAGGTATGCACCACCACAGAATCCTCTTCGACAAATACCATCCTGGTTATTTCGGGAAGGTCGGAATGAGGTACTTCCACAAGCTCCGCAACAAATTCTATTCCCCCATTGTTAACGTCGACAAGCTCTGGTCCCTCGTCCCTCAGGACGTCAAGGACAAGGCCTCTAAAGATAACGTCCCCTTGATTGACGTCACCCAGTTTGGGTACTTCAAAGTTTTGGGTAAGGGAGGTTTGCCTGAGAATCAGCCTGTCGTTGTGAAAGCTAAGCTTATCTCCAAAGTTGCTGAGAAGAAGATCAAGGAGAACGGCGGTGCGGTTGTTCTAACGGCTTAGGTATATCAGCTAATTGTTTAGCTATGGTTTTGTTTCAACTTTAGGTTTGATATTTTTGTTGTGGCGTTGTTTGATCTATTGGATTAATGCTATTATCGAACTTTGTGTTTCAGTTTTCTGTTCTTACCGTGAACTCATTCGATTTTGAATGTGTTTCTTGAATTATCATTTACTGTTATACATTGTTAATTTTGCTGTCATGATTGAAGTTTCTCATTGTTTTGAATGCTGCTTGCATGACATATTACCAAATAACCCGGTTTTCTCCTTGGAAGTTGAGCAATCTATCCTGCAAAGAAATCTCTGTGGGTAATATTTTTTCTTTCTTGCATCAGCTGAACTCTTTATTTTGTCGGTGTTATTTCTAATGTTAACATAGTTAGAACTGCAGAATTGTGGGTTTACCCTTCTGTCCCCGAGACTGTTGTCACGTCCTATATCTAATTAATTCTACTTCTTTACCTGCAAGTACCATAATTAGACTGGAATTGATGTTCATAGAGCCTCAGAACATCTCAGACCTTATTTGATGGTATTGGGTTATTTTTGGCAATGGCCTTCTGAATTCGAATCCGCCGAAGTCTTGGGCTTTGATGGTATGCTCCCCTCAAGGTCCCGAGTTCGAGTCTTTCCTGTAACATTATTTCATCGAAGTCTTTGGTGCCTGGCCTAGGGATGGGCGTGGTTGCCTTATTTCAACAAAAACCATGCAGATCCTATTAGATATTAAAAATTGTAGTTCTATTGTATGACTACAAAGACTTGTTTTTTATTTGTCTAGTGTAGGATGAGTAATCTTTGTTATGAGGTGCACAGATGCTTGTTAAAAATCCTCCATTTTCTGGTATTTTTCTTTCGTAATTGCCTGTTCCCAATGTTTCTGATATAGGTTGAGCCCGACAATTTATCTCGGTATTTTTTCGTACTCAGAATGTCTACCTAAACCAAAATAAGATTTGGAAACAAAAAAAGTACTTTGAAAGTTTGTTTTTGTTTTTTAAATTTGGTTAGTATTTCCAATATATTGTAGGAAAGATGTATGAAAGAGGGACTAGGAAATTTGAGCAAAAATAAGTTTTAATTTTAAAAACAAAAAACCAAAAATTGAATGATTATTAAACGAGATTTAAGATGCATACCTCTAACTGTTGTTGAATGAAAAAATTGATTTTGTGCTTTCCTTTGCTTAATCCCAAGCAGTCATTTGAAGGTGAATGCATTGGAGCTATAGAATTGTATCTGCACGACACATTAGACAGCCAAATCTGCACAGGGTACCCTGATTATTTATCAGCCATTTGTGGTCTTCATCGTAGGTGATCTCAGGAGCTCTGTTTCATTATTAATTTTCAACCCTCATGTTTCCCAGTGATTTGAAATAGTTGAATCACGTTTCTTTTAATGTTTAAATCAATTAAAAATAACATTTCTTCAACTACCAACTTGATTATCTACAATCTTAAATATGCAGTGTTGATCAATATAACAGTCTCATGGAATGTTTTTTTTTT

mRNA sequence

CTCTGTTCCGAGATCTATAAACTCCATCCAAACCCTAATCCCCATTTCCTCGCGCTCAGCCGCTGCCTGCAACTTCAAAACCCTAAATCTCCACCACTCGCCGGCGAAAATGACGACCCGATTCAAGAAGAACAGGAAGAAGCGCGGCCACGTGAGCGCCGGACACGGTCGTATCGGCAAGCACCGTAAGCATCCCGGCGGTCGCGGTAACGCCGGAGGTATGCACCACCACAGAATCCTCTTCGACAAATACCATCCTGGTTATTTCGGGAAGGTCGGAATGAGGTACTTCCACAAGCTCCGCAACAAATTCTATTCCCCCATTGTTAACGTCGACAAGCTCTGGTCCCTCGTCCCTCAGGACGTCAAGGACAAGGCCTCTAAAGATAACGTCCCCTTGATTGACGTCACCCAGTTTGGGTACTTCAAAGTTTTGGGTAAGGGAGGTTTGCCTGAGAATCAGCCTGTCGTTGTGAAAGCTAAGCTTATCTCCAAAGTTGCTGAGAAGAAGATCAAGGAGAACGGCGGTGCGGTTGTTCTAACGGCTTAGGTATATCAGCTAATTGTTTAGCTATGGTTTTGTTTCAACTTTAGGTTTGATATTTTTGTTGTGGCGTTGTTTGATCTATTGGATTAATGCTATTATCGAACTTTGTGTTTCAGTTTTCTGTTCTTACCGTGAACTCATTCGATTTTGAATGTGTTTCTTGAATTATCATTTACTGTTATACATTGTTAATTTTGCTGTCATGATTGAAGTTTCTCATTGTTTTGAATGCTGCTTGCATGACATATTACCAAATAACCCGGTTTTCTCCTTGGAAGTTGAGCAATCTATCCTGCAAAGAAATCTCTGTGGTCATTTGAAGGTGAATGCATTGGAGCTATAGAATTGTATCTGCACGACACATTAGACAGCCAAATCTGCACAGGGTACCCTGATTATTTATCAGCCATTTGTGGTCTTCATCGTAGGTGATCTCAGGAGCTCTGTTTCATTATTAATTTTCAACCCTCATGTTTCCCAGTGATTTGAAATAGTTGAATCACGTTTCTTTTAATGTTTAAATCAATTAAAAATAACATTTCTTCAACTACCAACTTGATTATCTACAATCTTAAATATGCAGTGTTGATCAATATAACAGTCTCATGGAATGTTTTTTTTTT

Coding sequence (CDS)

ATGACGACCCGATTCAAGAAGAACAGGAAGAAGCGCGGCCACGTGAGCGCCGGACACGGTCGTATCGGCAAGCACCGTAAGCATCCCGGCGGTCGCGGTAACGCCGGAGGTATGCACCACCACAGAATCCTCTTCGACAAATACCATCCTGGTTATTTCGGGAAGGTCGGAATGAGGTACTTCCACAAGCTCCGCAACAAATTCTATTCCCCCATTGTTAACGTCGACAAGCTCTGGTCCCTCGTCCCTCAGGACGTCAAGGACAAGGCCTCTAAAGATAACGTCCCCTTGATTGACGTCACCCAGTTTGGGTACTTCAAAGTTTTGGGTAAGGGAGGTTTGCCTGAGAATCAGCCTGTCGTTGTGAAAGCTAAGCTTATCTCCAAAGTTGCTGAGAAGAAGATCAAGGAGAACGGCGGTGCGGTTGTTCTAACGGCTTAG

Protein sequence

MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYSPIVNVDKLWSLVPQDVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPVVVKAKLISKVAEKKIKENGGAVVLTA
Homology
[Close]
BLAST of Sed0010183 vs. NCBI nr
Match: XP_022994677.1 (60S ribosomal protein L27a-3-like [Cucurbita maxima] >XP_023541109.1 60S ribosomal protein L27a-3-like [Cucurbita pepo subsp. pepo] >KAG6573080.1 60S ribosomal protein L27a-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012266.1 60S ribosomal protein L27a-3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 293.1 bits (749), Expect = 1.3e-75
Identity = 143/146 (97.95%), Postives = 145/146 (99.32%), Query Frame = 0 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYSPIVNVDKLWSLVPQDVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFY PIVNVDKLWSLVPQ+VKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120

Query: 121 VVKAKLISKVAEKKIKENGGAVVLTA 147
           VVKAKLISK+AEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

[Close]
BLAST of Sed0010183 vs. NCBI nr
Match: XP_022955304.1 (60S ribosomal protein L27a-3-like [Cucurbita moschata])

HSP 1 Score: 291.6 bits (745), Expect = 3.8e-75
Identity = 142/146 (97.26%), Postives = 144/146 (98.63%), Query Frame = 0 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYSPIVNVDKLWSLVPQDVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFY PIVNVDKLWSLVPQ+VKDKASKDN PLIDVTQFGYFKVLGKGGLPENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLIDVTQFGYFKVLGKGGLPENQPV 120

Query: 121 VVKAKLISKVAEKKIKENGGAVVLTA 147
           VVKAKLISK+AEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

[Close]
BLAST of Sed0010183 vs. NCBI nr
Match: XP_008438796.1 (PREDICTED: 60S ribosomal protein L27a-3-like [Cucumis melo] >KAA0055257.1 60S ribosomal protein L27a-3-like [Cucumis melo var. makuwa] >TYJ99181.1 60S ribosomal protein L27a-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 289.7 bits (740), Expect = 1.4e-74
Identity = 142/146 (97.26%), Postives = 144/146 (98.63%), Query Frame = 0 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYSPIVNVDKLWSLVPQDVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFY PIVNVDKLWSLVPQ+VKDKASKDNVPLIDVTQFGYFKVLGKG LPENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGVLPENQPV 120

Query: 121 VVKAKLISKVAEKKIKENGGAVVLTA 147
           VVKAKLISK+AEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

[Close]
BLAST of Sed0010183 vs. NCBI nr
Match: XP_022136990.1 (60S ribosomal protein L27a-3-like [Momordica charantia])

HSP 1 Score: 288.9 bits (738), Expect = 2.5e-74
Identity = 141/146 (96.58%), Postives = 144/146 (98.63%), Query Frame = 0 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYSPIVNVDKLWSLVPQDVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFY PIVNVDKLWSLVPQ+VKDKASKDNVPLIDVTQFGYFKVLGKG +PENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGVMPENQPV 120

Query: 121 VVKAKLISKVAEKKIKENGGAVVLTA 147
           VVKAKLISK+AEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

[Close]
BLAST of Sed0010183 vs. NCBI nr
Match: XP_038893626.1 (60S ribosomal protein L27a-3 [Benincasa hispida])

HSP 1 Score: 288.5 bits (737), Expect = 3.2e-74
Identity = 141/146 (96.58%), Postives = 144/146 (98.63%), Query Frame = 0 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYSPIVNVDKLWSLVPQDVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFY PIVNVDKLWSLVPQ+VKDKA+KDNVPLIDVTQFGYFKVLGKG LPENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKATKDNVPLIDVTQFGYFKVLGKGVLPENQPV 120

Query: 121 VVKAKLISKVAEKKIKENGGAVVLTA 147
           VVKAKLISK+AEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

[Close]
BLAST of Sed0010183 vs. ExPASy Swiss-Prot
Match: P49637 (60S ribosomal protein L27a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27AC PE=2 SV=2)

HSP 1 Score: 270.4 bits (690), Expect = 1.2e-71
Identity = 132/146 (90.41%), Postives = 139/146 (95.21%), Query Frame = 0 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYSPIVNVDKLWSLVPQDVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKF+ PIVN+DKLWSLVP+DVK K++KDNVPLIDVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLISKVAEKKIKENGGAVVLTA 147
           VVKAKLISK AEKKIKE GGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]
BLAST of Sed0010183 vs. ExPASy Swiss-Prot
Match: Q9LR33 (60S ribosomal protein L27a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27AB PE=2 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 5.0e-70
Identity = 130/146 (89.04%), Postives = 136/146 (93.15%), Query Frame = 0 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M T  KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYSPIVNVDKLWSLVPQDVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKF+ PIVN+DKLWSLVP+DVK K+SKDNVPLIDVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLISKVAEKKIKENGGAVVLTA 147
           VVKAKLISK AEKKIKE GGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]
BLAST of Sed0010183 vs. ExPASy Swiss-Prot
Match: Q56K03 (60S ribosomal protein L27a OS=Bos taurus OX=9913 GN=RPL27A PE=2 SV=3)

HSP 1 Score: 193.4 bits (490), Expect = 1.9e-48
Identity = 98/149 (65.77%), Postives = 117/149 (78.52%), Query Frame = 0 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query: 61  FHKLRNKFYSPIVNVDKLWSLVPQDVKDKASKDN---VPLIDVTQFGYFKVLGKGGLPEN 120
           +H  RN+ + P VN+DKLW+LV +  +  A+K+     P+IDV + GY+KVLGKG LP+ 
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK- 120

Query: 121 QPVVVKAKLISKVAEKKIKENGGAVVLTA 147
           QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct: 121 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

[Close]
BLAST of Sed0010183 vs. ExPASy Swiss-Prot
Match: P14115 (60S ribosomal protein L27a OS=Mus musculus OX=10090 GN=Rpl27a PE=1 SV=5)

HSP 1 Score: 193.4 bits (490), Expect = 1.9e-48
Identity = 98/149 (65.77%), Postives = 117/149 (78.52%), Query Frame = 0 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query: 61  FHKLRNKFYSPIVNVDKLWSLVPQDVKDKASKDN---VPLIDVTQFGYFKVLGKGGLPEN 120
           +H  RN+ + P VN+DKLW+LV +  +  A+K+     P+IDV + GY+KVLGKG LP+ 
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLPK- 120

Query: 121 QPVVVKAKLISKVAEKKIKENGGAVVLTA 147
           QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct: 121 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

[Close]
BLAST of Sed0010183 vs. ExPASy Swiss-Prot
Match: P18445 (60S ribosomal protein L27a OS=Rattus norvegicus OX=10116 GN=Rpl27a PE=1 SV=3)

HSP 1 Score: 193.4 bits (490), Expect = 1.9e-48
Identity = 98/149 (65.77%), Postives = 117/149 (78.52%), Query Frame = 0 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query: 61  FHKLRNKFYSPIVNVDKLWSLVPQDVKDKASKDN---VPLIDVTQFGYFKVLGKGGLPEN 120
           +H  RN+ + P VN+DKLW+LV +  +  A+K+     P+IDV + GY+KVLGKG LP+ 
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRSGYYKVLGKGKLPK- 120

Query: 121 QPVVVKAKLISKVAEKKIKENGGAVVLTA 147
           QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct: 121 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

[Close]
BLAST of Sed0010183 vs. ExPASy TrEMBL
Match: A0A6J1JWJ1 (60S ribosomal protein L27a-3-like OS=Cucurbita maxima OX=3661 GN=LOC111490319 PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 6.3e-76
Identity = 143/146 (97.95%), Postives = 145/146 (99.32%), Query Frame = 0 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYSPIVNVDKLWSLVPQDVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFY PIVNVDKLWSLVPQ+VKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120

Query: 121 VVKAKLISKVAEKKIKENGGAVVLTA 147
           VVKAKLISK+AEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

[Close]
BLAST of Sed0010183 vs. ExPASy TrEMBL
Match: A0A6J1GVV4 (60S ribosomal protein L27a-3-like OS=Cucurbita moschata OX=3662 GN=LOC111457307 PE=3 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 1.8e-75
Identity = 142/146 (97.26%), Postives = 144/146 (98.63%), Query Frame = 0 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYSPIVNVDKLWSLVPQDVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFY PIVNVDKLWSLVPQ+VKDKASKDN PLIDVTQFGYFKVLGKGGLPENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLIDVTQFGYFKVLGKGGLPENQPV 120

Query: 121 VVKAKLISKVAEKKIKENGGAVVLTA 147
           VVKAKLISK+AEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

[Close]
BLAST of Sed0010183 vs. ExPASy TrEMBL
Match: A0A5A7UL02 (60S ribosomal protein L27a-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003900 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 7.0e-75
Identity = 142/146 (97.26%), Postives = 144/146 (98.63%), Query Frame = 0 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYSPIVNVDKLWSLVPQDVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFY PIVNVDKLWSLVPQ+VKDKASKDNVPLIDVTQFGYFKVLGKG LPENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGVLPENQPV 120

Query: 121 VVKAKLISKVAEKKIKENGGAVVLTA 147
           VVKAKLISK+AEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

[Close]
BLAST of Sed0010183 vs. ExPASy TrEMBL
Match: A0A1S3AXX5 (60S ribosomal protein L27a-3-like OS=Cucumis melo OX=3656 GN=LOC103483791 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 7.0e-75
Identity = 142/146 (97.26%), Postives = 144/146 (98.63%), Query Frame = 0 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYSPIVNVDKLWSLVPQDVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFY PIVNVDKLWSLVPQ+VKDKASKDNVPLIDVTQFGYFKVLGKG LPENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGVLPENQPV 120

Query: 121 VVKAKLISKVAEKKIKENGGAVVLTA 147
           VVKAKLISK+AEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

[Close]
BLAST of Sed0010183 vs. ExPASy TrEMBL
Match: A0A6J1C5F8 (60S ribosomal protein L27a-3-like OS=Momordica charantia OX=3673 GN=LOC111008562 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.2e-74
Identity = 141/146 (96.58%), Postives = 144/146 (98.63%), Query Frame = 0 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYSPIVNVDKLWSLVPQDVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFY PIVNVDKLWSLVPQ+VKDKASKDNVPLIDVTQFGYFKVLGKG +PENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGVMPENQPV 120

Query: 121 VVKAKLISKVAEKKIKENGGAVVLTA 147
           VVKAKLISK+AEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

[Close]
BLAST of Sed0010183 vs. TAIR 10
Match: AT1G70600.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 270.4 bits (690), Expect = 8.5e-73
Identity = 132/146 (90.41%), Postives = 139/146 (95.21%), Query Frame = 0 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYSPIVNVDKLWSLVPQDVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKF+ PIVN+DKLWSLVP+DVK K++KDNVPLIDVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLISKVAEKKIKENGGAVVLTA 147
           VVKAKLISK AEKKIKE GGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]
BLAST of Sed0010183 vs. TAIR 10
Match: AT1G23290.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 265.0 bits (676), Expect = 3.6e-71
Identity = 130/146 (89.04%), Postives = 136/146 (93.15%), Query Frame = 0 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M T  KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYSPIVNVDKLWSLVPQDVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKF+ PIVN+DKLWSLVP+DVK K+SKDNVPLIDVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLISKVAEKKIKENGGAVVLTA 147
           VVKAKLISK AEKKIKE GGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]
BLAST of Sed0010183 vs. TAIR 10
Match: AT1G12960.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 124.4 bits (311), Expect = 7.5e-29
Identity = 78/145 (53.79%), Postives = 82/145 (56.55%), Query Frame = 0 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTT  KK R  R HVS GHGR GKHRK PG RGNAG                   VGMRY
Sbjct: 1   MTTSRKKTRNLREHVSVGHGRFGKHRKLPGSRGNAG-------------------VGMRY 60

Query: 61  FHKLRNKFYSPIVNVDKLWSLVPQDVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFY  IVN+DKLWS+                          VLGKG LPEN+PV
Sbjct: 61  FHKLRNKFYCQIVNLDKLWSM--------------------------VLGKGFLPENKPV 100

Query: 121 VVKAKLISKVAEKKIKENGGAVVLT 146
           VVKAKL+S   EKKIKE G AVVLT
Sbjct: 121 VVKAKLVSNTDEKKIKEAGSAVVLT 100

The following BLAST results are available for this feature:
BLAST of Sed0010183 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022994677.11.3e-7597.9560S ribosomal protein L27a-3-like [Cucurbita maxima] >XP_023541109.1 60S ribosom... [more]
XP_022955304.13.8e-7597.2660S ribosomal protein L27a-3-like [Cucurbita moschata][more]
XP_008438796.11.4e-7497.26PREDICTED: 60S ribosomal protein L27a-3-like [Cucumis melo] >KAA0055257.1 60S ri... [more]
XP_022136990.12.5e-7496.5860S ribosomal protein L27a-3-like [Momordica charantia][more]
XP_038893626.13.2e-7496.5860S ribosomal protein L27a-3 [Benincasa hispida][more]
BLAST of Sed0010183 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P496371.2e-7190.4160S ribosomal protein L27a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27AC PE=2 SV=... [more]
Q9LR335.0e-7089.0460S ribosomal protein L27a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27AB PE=2 SV=... [more]
Q56K031.9e-4865.7760S ribosomal protein L27a OS=Bos taurus OX=9913 GN=RPL27A PE=2 SV=3[more]
P141151.9e-4865.7760S ribosomal protein L27a OS=Mus musculus OX=10090 GN=Rpl27a PE=1 SV=5[more]
P184451.9e-4865.7760S ribosomal protein L27a OS=Rattus norvegicus OX=10116 GN=Rpl27a PE=1 SV=3[more]
BLAST of Sed0010183 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JWJ16.3e-7697.9560S ribosomal protein L27a-3-like OS=Cucurbita maxima OX=3661 GN=LOC111490319 PE... [more]
A0A6J1GVV41.8e-7597.2660S ribosomal protein L27a-3-like OS=Cucurbita moschata OX=3662 GN=LOC111457307 ... [more]
A0A5A7UL027.0e-7597.2660S ribosomal protein L27a-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A1S3AXX57.0e-7597.2660S ribosomal protein L27a-3-like OS=Cucumis melo OX=3656 GN=LOC103483791 PE=3 S... [more]
A0A6J1C5F81.2e-7496.5860S ribosomal protein L27a-3-like OS=Momordica charantia OX=3673 GN=LOC111008562... [more]
BLAST of Sed0010183 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G70600.18.5e-7390.41Ribosomal protein L18e/L15 superfamily protein [more]
AT1G23290.13.6e-7189.04Ribosomal protein L18e/L15 superfamily protein [more]
AT1G12960.17.5e-2953.79Ribosomal protein L18e/L15 superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021131Ribosomal protein L18e/L15PPFAMPF00828Ribosomal_L27Acoord: 28..143
e-value: 8.0E-20
score: 71.8
NoneNo IPR availableGENE3D3.100.10.10coord: 58..146
e-value: 4.8E-38
score: 131.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35
NoneNo IPR availablePANTHERPTHR11721:SF2160S RIBOSOMAL PROTEIN L27A-3coord: 1..146
NoneNo IPR availablePANTHERPTHR1172160S RIBOSOMAL PROTEIN L27Acoord: 1..146
IPR001196Ribosomal protein L15, conserved sitePROSITEPS00475RIBOSOMAL_L15coord: 107..139
IPR030878Ribosomal protein L15HAMAPMF_01341Ribosomal_L15coord: 1..145
score: 11.762963
IPR036227Ribosomal L18e/L15P superfamilySUPERFAMILY52080Ribosomal proteins L15p and L18ecoord: 6..145

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0010183.2Sed0010183.2mRNA
Sed0010183.1Sed0010183.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003735 structural constituent of ribosome