Sed0010086 (gene) Chayote v1

Overview


Name	Sed0010086
Type	gene
Organism	Sechium edule (Chayote v1)
Description	glycine-rich RNA-binding protein GRP1A-like
Location	LG07: 37616618 .. 37619076 (-)
RNA-Seq Expression	Sed0010086
Synteny	Sed0010086

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATTGATATTCATTCTGTTTTGTTCTACCATGGCCAATTCATCTTCTCTGCAACAAATTTTCCCAACAGGTCAGTTTTCTTTTCTATTAAATAATATAGACATTCATCTTGAAATCAATTGAGTAATGAAATGAGTAGTCTAAGATGATGCCTCTTTTGGGCTATCAAGTTTGAATCAAATCCAATTTTTACTTTATTGATCAACTAAATATCGGTTTGGATTTAATGGGTTCAGATACCATATTAAATAATATGAATATTCATCTCAAAATCAATTGGTTATGAAATGGAGTCCATCTATCTTATAAATGTTTGTTCAACTGTCCACTATTTCAACGTGGGATCCTAACAAAATCTTCCCATTGAATTAAAAAAAAAAACCTCTAAATAAGAAATCCAAATGAAAGTTGAAAGTTTGGTGTCTAATAATGATAAAAAGAAAAGATCATACGTTGAGTATTTTGTTATTCCTTACCGGTTTGTTTTCATTCTCTTTGAAATTCCATTCAAAGATCATAGAGGCTGTTTGCCTGACATATTTAGGTAGGAGTTAGTTCTAGGATTTATTATCCCTTCCTTAAAAACTAACATCCAAACGAGTTTTTATTAACTCCTCATTTTTACTTTTATAATATTTATTTTTTAATTACTAAAAATAACTACTCATTTTTAAATCTACATACAAACAAGATTTTGACTCTAACTCTTCTATACAAAAACTACACCAAAACGAATTTTTGACACAACTCTCAATTTTTAACTCCTCAACATAACTCTTCAATAACTCTTTAACCCAAAAAATCCAAAACTACCTGAATATCAAATAATTGTTAAGTAAAAAGTAAAAGGAAATAAAGTAAAGGAAAAAGTTGCACAAACCACACCCATCATTAATAATATTAAAGCGTCTACTTTAAAAAAAAAAAAAAAAAATCAAGAAAACAATTTTTTTTTTCTTCACTATATCCATTATATTATTAAAAACGATATTAATCTGCTTTGGTCTGAAAGGATAAAAAGGAGTTTCTCAAAAAAGAAAGGATAAAAAGGAGTTTGAAATAGAAAAATACAGCGTCTACTTTAAGAAAAGAAACAAATCTCAAGATTCATTTCACTTATGACAGTTTTTACCTCATAAAACAGATTACTTTTCATGAAATATCAGAAACCTAAAACAACTTTTGAAACAGGATCTTTAAGTTAATATTTTTTAATACATATTTAAGTTACAAATTTTTTTGTTTCAAAATATAATAAAGAGAAATATGCTTACTCTATCATAAAAAAATATTATTTTTTATAAAAAAAAAGTATACCCAACTGTATTAGAATGGAAATATATGCAAAGCATATGTTAAAAAAAAATCTAGAAAGAAATTAAAAATGAATTTTGGTATCTCACTGGTGCATGGCCATTAATAGAATGTGGCCAACTTTCCTATAGTCCGTATTCACCTTCAATGAGTTTAGAAATATATAAAATAAAAGCTGTCTAAGTTAAAAATATCATTTCAATACTCACATTTTTTTACCTTTTAAATACTTAGAGATATGCTCTCCTTATAAATGTGGGATTCTCAACATGCCCCCGCGTCCCAAAAGCCCTCACTTGTGGGCTTTGTAATTTTCCTACTTTGATACCATGTTGAATTTGTGAAATAGTGTGGACATTCATCTCAAAACCAATTGGTGATGAGAGAAGTAGTCCACCTACCTTTTAAACACTTAGAAATATGTTCTCCTTATAAATGTTAGATTCTCAACAATTTTAACCCAAGTATTATAATATGTTGCCAATTTTGATTAAAAAAATTAACTTCGAGTGATCACTCATTTTAAAAACTATTATAAAGTGATCCATTTTGTTAAAGATCTCACATCGGAAAGAGTGGAAATCTCATTAACAATATAAAAGAGATATGAATTACTATATTCATTGTCAATTGATTTTGAGGTCAGACGGTTGACTCGAACAGTCATCGACTAATTTTCAGATTTGATAAAAAGTAACATAAATAGGATGAGACAATCAAGAAAACATTTCATGTATCTCCTGTTGCACAAGTCTTTTTTCAATGTAAACTTTGGAAAAATAATAGTTATCATTATAAAACGAAATCAATCATGCCCCATTTGCTAAACCAGCTTCTATATGTATGCAGAATCTAATTACCACCAGCAAACCAAGATAGAAAAACATGGTCAAGATGGGGTTACTTACTGGATTGGCAGAAAATACAGTGCAAGTTTAGTTACCGTTTCTCGTCGTGGAGGAGGTGGTGGTCGTGGAGGAGGCGGTGGTCGTGGTGGAGGTAGCAGATATGTAGGAGGAGGAGCTGTTGGTTCGGGACAAGCAAGTCGATCGCCCAATGCAGGAGCTTGCCAAGAGAACAACATAGTGCTTTTGATAGCTGCAGTTTTGGCTGTCATTACACATCTATACATAGTTTTCTAA

mRNA sequence

ATGAGATTGATATTCATTCTGTTTTGTTCTACCATGGCCAATTCATCTTCTCTGCAACAAATTTTCCCAACAGAATCTAATTACCACCAGCAAACCAAGATAGAAAAACATGGTCAAGATGGGGTTACTTACTGGATTGGCAGAAAATACAGTGCAAGTTTAGTTACCGTTTCTCGTCGTGGAGGAGGTGGTGGTCGTGGAGGAGGCGGTGGTCGTGGTGGAGGTAGCAGATATGTAGGAGGAGGAGCTGTTGGTTCGGGACAAGCAAGTCGATCGCCCAATGCAGGAGCTTGCCAAGAGAACAACATAGTGCTTTTGATAGCTGCAGTTTTGGCTGTCATTACACATCTATACATAGTTTTCTAA

Coding sequence (CDS)

ATGAGATTGATATTCATTCTGTTTTGTTCTACCATGGCCAATTCATCTTCTCTGCAACAAATTTTCCCAACAGAATCTAATTACCACCAGCAAACCAAGATAGAAAAACATGGTCAAGATGGGGTTACTTACTGGATTGGCAGAAAATACAGTGCAAGTTTAGTTACCGTTTCTCGTCGTGGAGGAGGTGGTGGTCGTGGAGGAGGCGGTGGTCGTGGTGGAGGTAGCAGATATGTAGGAGGAGGAGCTGTTGGTTCGGGACAAGCAAGTCGATCGCCCAATGCAGGAGCTTGCCAAGAGAACAACATAGTGCTTTTGATAGCTGCAGTTTTGGCTGTCATTACACATCTATACATAGTTTTCTAA

Protein sequence

MRLIFILFCSTMANSSSLQQIFPTESNYHQQTKIEKHGQDGVTYWIGRKYSASLVTVSRRGGGGGRGGGGGRGGGSRYVGGGAVGSGQASRSPNAGACQENNIVLLIAAVLAVITHLYIVF

Homology

[Close]

BLAST of Sed0010086 vs. NCBI nr
Match: XP_023517064.1 (glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo] >KAG7032020.1 hypothetical protein SDJN02_06062 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 92.8 bits (229), Expect = 2.2e-15
Identity = 72/136 (52.94%), Postives = 87/136 (63.97%), Query Frame = 0


Query: 1   MRLIFILFCSTM-ANSSSL-QQIFPTESNYHQQTKIEKHGQDGVTYWIGRKYSASLVTVS 60
           + L+F+LFCST+ A SS+L QQI PTESNYHQ+T  EKHG+DGVT  I   YSA  +TVS
Sbjct: 7   LTLMFLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYSARAITVS 66

Query: 61  RRGGGGGRGGGGGRGGGSRYVGGG---------AVGSGQA----SRSPNAGACQENNIVL 120
           +  G G   GGG  GGG R   GG         A GS QA     R+ NAG   ENN+ L
Sbjct: 67  QGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMGL 126

Query: 121 LIAAVLAVITHLYIVF 122
           L+A+VLA I HL++VF
Sbjct: 127 LVASVLAAIAHLHLVF 142

[Close]

BLAST of Sed0010086 vs. NCBI nr
Match: XP_022957462.1 (glycine-rich RNA-binding protein GRP1A-like [Cucurbita moschata])

HSP 1 Score: 92.8 bits (229), Expect = 2.2e-15
Identity = 72/136 (52.94%), Postives = 87/136 (63.97%), Query Frame = 0


Query: 1   MRLIFILFCSTM-ANSSSL-QQIFPTESNYHQQTKIEKHGQDGVTYWIGRKYSASLVTVS 60
           + L+F+LFCST+ A SS+L QQI PTESNYHQ+T  EKHG+DGVT  I   YSA  +TVS
Sbjct: 7   LTLMFLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYSARAITVS 66

Query: 61  RRGGGGGRGGGGGRGGGSRYVGGG---------AVGSGQA----SRSPNAGACQENNIVL 120
           +  G G   GGG  GGG R   GG         A GS QA     R+ NAG   ENN+ L
Sbjct: 67  QGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMGL 126

Query: 121 LIAAVLAVITHLYIVF 122
           L+A+VLA I HL++VF
Sbjct: 127 LVASVLAAIVHLHLVF 142

[Close]

BLAST of Sed0010086 vs. NCBI nr
Match: XP_022945097.1 (uncharacterized protein LOC111449437 isoform X1 [Cucurbita moschata])

HSP 1 Score: 92.8 bits (229), Expect = 2.2e-15
Identity = 73/132 (55.30%), Postives = 83/132 (62.88%), Query Frame = 0


Query: 1   MRLIFILFCSTMA-NSSSLQQIFPTESNYHQQTKIEKHGQDGVTYWIGRKYSASLVTVSR 60
           M LIFILFCS MA  +SSLQ+I PTESN HQ+T  EKHG+DG T  IGR+ SA  +TVS+
Sbjct: 6   MGLIFILFCSAMAIIASSLQEILPTESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQ 65

Query: 61  ---RGGGGGRGGGGGRGG-GSRYVGGGAV------GSGQA----SRSPNAGACQENNIVL 118
               GGG  RGG  G GG  S + GG AV      GS QA     R  NAG   ENN+ L
Sbjct: 66  AVAHGGGASRGGARGGGGVSSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGTRHENNMWL 125

[Close]

BLAST of Sed0010086 vs. NCBI nr
Match: XP_022945098.1 (uncharacterized protein LOC111449437 isoform X2 [Cucurbita moschata])

HSP 1 Score: 91.3 bits (225), Expect = 6.3e-15
Identity = 70/127 (55.12%), Postives = 80/127 (62.99%), Query Frame = 0


Query: 1   MRLIFILFCSTMA-NSSSLQQIFPTESNYHQQTKIEKHGQDGVTYWIGRKYSASLVTVSR 60
           M LIFILFCS MA  +SSLQ+I PTESN HQ+T  EKHG+DG T  IGR+ SA  +TVS+
Sbjct: 6   MGLIFILFCSAMAIIASSLQEILPTESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQ 65

Query: 61  --RGGGGGRGGGG---GRGGGSR----YVGGGAVGSGQASRSPNAGACQENNIVLLIAAV 118
               GGG RGGGG      GGS     YV G A    +  R  NAG   ENN+ LL+AA 
Sbjct: 66  AVAHGGGARGGGGVSSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGTRHENNMWLLVAAA 125

[Close]

BLAST of Sed0010086 vs. NCBI nr
Match: KAG6601227.1 (hypothetical protein SDJN03_06460, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.3 bits (225), Expect = 6.3e-15
Identity = 71/133 (53.38%), Postives = 85/133 (63.91%), Query Frame = 0


Query: 4   IFILFCSTM-ANSSSL-QQIFPTESNYHQQTKIEKHGQDGVTYWIGRKYSASLVTVSRRG 63
           +F+LFCST+ A SS+L QQI PTESNYHQ+T  EKHG+DGVT  I   YSA  +TVS+  
Sbjct: 1   MFLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGI 60

Query: 64  GGGGRGGGGGRGGGSRYVGGG---------AVGSGQA----SRSPNAGACQENNIVLLIA 122
           G G   GGG  GGG R   GG         A GS QA     R+ NAG   ENN+ LL+A
Sbjct: 61  GHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMGLLVA 120

[Close]

BLAST of Sed0010086 vs. ExPASy TrEMBL
Match: A0A6J1G000 (uncharacterized protein LOC111449437 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449437 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.0e-15
Identity = 73/132 (55.30%), Postives = 83/132 (62.88%), Query Frame = 0


Query: 1   MRLIFILFCSTMA-NSSSLQQIFPTESNYHQQTKIEKHGQDGVTYWIGRKYSASLVTVSR 60
           M LIFILFCS MA  +SSLQ+I PTESN HQ+T  EKHG+DG T  IGR+ SA  +TVS+
Sbjct: 6   MGLIFILFCSAMAIIASSLQEILPTESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQ 65

Query: 61  ---RGGGGGRGGGGGRGG-GSRYVGGGAV------GSGQA----SRSPNAGACQENNIVL 118
               GGG  RGG  G GG  S + GG AV      GS QA     R  NAG   ENN+ L
Sbjct: 66  AVAHGGGASRGGARGGGGVSSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGTRHENNMWL 125

[Close]

BLAST of Sed0010086 vs. ExPASy TrEMBL
Match: A0A6J1GZ71 (glycine-rich RNA-binding protein GRP1A-like OS=Cucurbita moschata OX=3662 GN=LOC111458855 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.0e-15
Identity = 72/136 (52.94%), Postives = 87/136 (63.97%), Query Frame = 0


Query: 1   MRLIFILFCSTM-ANSSSL-QQIFPTESNYHQQTKIEKHGQDGVTYWIGRKYSASLVTVS 60
           + L+F+LFCST+ A SS+L QQI PTESNYHQ+T  EKHG+DGVT  I   YSA  +TVS
Sbjct: 7   LTLMFLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYSARAITVS 66

Query: 61  RRGGGGGRGGGGGRGGGSRYVGGG---------AVGSGQA----SRSPNAGACQENNIVL 120
           +  G G   GGG  GGG R   GG         A GS QA     R+ NAG   ENN+ L
Sbjct: 67  QGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMGL 126

Query: 121 LIAAVLAVITHLYIVF 122
           L+A+VLA I HL++VF
Sbjct: 127 LVASVLAAIVHLHLVF 142

[Close]

BLAST of Sed0010086 vs. ExPASy TrEMBL
Match: A0A6J1JB47 (uncharacterized protein LOC111485159 OS=Cucurbita maxima OX=3661 GN=LOC111485159 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.0e-15
Identity = 69/136 (50.74%), Postives = 83/136 (61.03%), Query Frame = 0


Query: 1   MRLIFILFCSTM--ANSSSLQQIFPTESNYHQQTKIEKHGQDGVTYWIGRKYSASLVTVS 60
           + L+F+LFCST+   +S+  QQI PTE NYHQ+T  EKHGQDGVT  I   YSA  +TVS
Sbjct: 7   LSLMFLLFCSTIPAISSARQQQILPTEPNYHQKTNAEKHGQDGVTNRISSIYSARAITVS 66

Query: 61  RRGGGGGRGGGGGRGGGSRYVGGG---------AVGSGQA----SRSPNAGACQENNIVL 120
           +  G G   GGG  GGG R   GG         A GS QA     R  NAG   ENN+ L
Sbjct: 67  QGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRPRNAGNHYENNMGL 126

Query: 121 LIAAVLAVITHLYIVF 122
           L+A+VLA I HL++VF
Sbjct: 127 LVASVLAAIAHLHLVF 142

[Close]

BLAST of Sed0010086 vs. ExPASy TrEMBL
Match: A0A6J1FZV5 (uncharacterized protein LOC111449437 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111449437 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.0e-15
Identity = 70/127 (55.12%), Postives = 80/127 (62.99%), Query Frame = 0


Query: 1   MRLIFILFCSTMA-NSSSLQQIFPTESNYHQQTKIEKHGQDGVTYWIGRKYSASLVTVSR 60
           M LIFILFCS MA  +SSLQ+I PTESN HQ+T  EKHG+DG T  IGR+ SA  +TVS+
Sbjct: 6   MGLIFILFCSAMAIIASSLQEILPTESNCHQKTNTEKHGEDGATNQIGRRNSACAITVSQ 65

Query: 61  --RGGGGGRGGGG---GRGGGSR----YVGGGAVGSGQASRSPNAGACQENNIVLLIAAV 118
               GGG RGGGG      GGS     YV G A    +  R  NAG   ENN+ LL+AA 
Sbjct: 66  AVAHGGGARGGGGVSSPHTGGSAVIPIYVAGSAQAQRRRGRPVNAGTRHENNMWLLVAAA 125

[Close]

BLAST of Sed0010086 vs. ExPASy TrEMBL
Match: A0A0A0KUR6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613600 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.0e-15
Identity = 79/148 (53.38%), Postives = 92/148 (62.16%), Query Frame = 0


Query: 1   MRLIFILFCSTMANSSSL--QQIFP--TESNYHQQTKIEKHGQDGVTYWIGRKYSASLVT 60
           +RLIF+LFCST+A SS+   QQIFP  TESNY Q+T  +KHG+ GVT  I R+YS+S +T
Sbjct: 7   IRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRYSSSAIT 66

Query: 61  VS---RRGGGGGRGG--------GGGRGGGSR-YVGGG-------AVGSGQA----SRSP 120
           VS   RRG G G GG        GGG  GGSR   GGG       A GS QA     R+ 
Sbjct: 67  VSNVIRRGSGSGGGGGSGSAAAAGGGENGGSRPRTGGGTAVIPVYAAGSAQAHHRQGRAH 126

Query: 121 NAGACQENNIVLLIAAVLAVITHLYIVF 122
           NAG   ENN+ LL+AAVLA I HL  VF
Sbjct: 127 NAGNSYENNMGLLVAAVLAAIAHLCRVF 154

The following BLAST results are available for this feature:

BLAST of Sed0010086 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023517064.1	2.2e-15	52.94	glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo] >KAG703...	[more]
XP_022957462.1	2.2e-15	52.94	glycine-rich RNA-binding protein GRP1A-like [Cucurbita moschata]	[more]
XP_022945097.1	2.2e-15	55.30	uncharacterized protein LOC111449437 isoform X1 [Cucurbita moschata]	[more]
XP_022945098.1	6.3e-15	55.12	uncharacterized protein LOC111449437 isoform X2 [Cucurbita moschata]	[more]
KAG6601227.1	6.3e-15	53.38	hypothetical protein SDJN03_06460, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0010086 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0010086 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G000	1.0e-15	55.30	uncharacterized protein LOC111449437 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1GZ71	1.0e-15	52.94	glycine-rich RNA-binding protein GRP1A-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1JB47	3.0e-15	50.74	uncharacterized protein LOC111485159 OS=Cucurbita maxima OX=3661 GN=LOC111485159...	[more]
A0A6J1FZV5	3.0e-15	55.12	uncharacterized protein LOC111449437 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A0A0KUR6	4.0e-15	53.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613600 PE=4 SV=1	[more]

BLAST of Sed0010086 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010086.1	Sed0010086.1	mRNA