Sed0010021 (gene) Chayote v1

Overview


Name	Sed0010021
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Gag/pol protein
Location	LG01: 60637865 .. 60640320 (+)
RNA-Seq Expression	Sed0010021
Synteny	Sed0010021

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGCTCTTATTGGAATCAGAGCTTTGGCTCATATGGTAATTATTGTTATTCTAATTGTTGTTATTCGAATCATCTTATTGGTGGGTTTTAATTTTCATTGGATGAATGTTAAATTATTATTGTTTTTAGCTAGAGATTTTTTGTTTGACATTAGGATTTTTATAAATTCTTAGATCTTGTGTAAACCCAAGCATTTGGGTATAGGAAAAACTTTGTACAATTTTGTTTTTCTATTTTATGCAATTTGGAATTGGCAAAAGAACGAAGAAGACCATGAATAACACTAAGAACACAACAAAGAATATCATGGATGGGTTTTTCTCCATAAAAGAGAAATCAAAATTTTTCCTAAAATATTTATCAAAATTTTTCCTAAAATATCTTTTTTTGGAAAATATTTGGATAGGAATAATAATTATCTTTTAAAACCTGATATTTTGGAAAGTATAATGAGAATTAGTTATGGTTAATATTTTTAGAAAATATGGTAACCATAAATAATTAAAGGATATTTAAATAGAGATTTAAAAGTTAAATTAATAATCTTTGGAAGATTTTTTATGGGATAATTTTACAGAAATCTTTATTTTAAAGCCATTTAAATATTGAAATATTTTTGGAAAATATTTGGGAAATATTTAAAGAGATTTCTTCTCGTCAAAGTTTCTAGAAGATCAAGAAGTGAAGACAAATTATTCTTGGAGAATTTCTTAGCTTATGTCGCAATTTAAATTTCCTAGAAGTATGTCAAACATCAAATCGGTCATTAACTATTTACATCATATGTTACTTATTTGCATATCTTGGTTGTTGCATAAAGTATGGCATAAAGATTTAAAATCTCATCATAGGTTAAAAAGATTCATGCATCATGCATGTGAATTAAATATATCAGACCGATCACGTAGATCTCAACATGTAGATCTCAAAAATACATAATTGTTGTTTGTTATTCATTATGTTGAATGTATGGATTATATATATTTGAAAATTAGTCTTTCAAAATAGAAACCAAATAATATTCATTTAAACTCTACTACAAAAATGATTGATTGTTATCACTTAAATTTTTAGTTAATACGATTAATTAAAGAGCAAATTGATTATGTAAGGATTGGTTGGAAAGGAATCCTGCCTAAGGAAGGTTCTGATAGAGGTATTTAAGATGACGGTTTAAGGAACATCTTTACCTGGGAACGCGGCCTGAGGGTTGAAACGACCAAGAATTATAGATCATTTTGTGCAGACTCAAATAATGTGATTAGGTTTAGAGTAAAAGCTTGAAAATTCACATTAAAAATCAATAGGTAAAAGATTGAGACTTGGATGAACAAGATGAGCCTAGTTCATTTGAGTGGGAGGGAACCCTGTTAAAAAATAAATAGTAGGAGAAGGATCGGTGTCAACTGATCCTACGATCTCCATTGTGAACTTGTATCGTGAGAATCTAAAGGGGGTAAGTGTCGCTAGTTTGAGTCGACCGCCCTCAGTGTTTATTCACCAAGGTCAATATTAGGGCGAGTTATCCGAAAGGTATAGGACTGTGATCTTGAACGGTCTTGACTTCTCATTCCACGGCACTTATAGAGAGAGATTAACATGTTCATATCGATGGGCTACACTATCAAGGGACTAGTTAAAGAGTTAGCCAAGTCCTAGATCAAAAAATGGTAGCTGGAACCATAGGGAATAGAGTTAAAATGGTATTGAGTTTCTGATGGAGAAGAGTCTCATGCTAAGGACGAGTATTTGATTTATCATTCGACGACACTTATTCTAAACCTTTATAGTTGTACCATGACATTAATATTAAACAATTGTAGGGTTTCCTGAAATGTTTTTTTTTCTTTTTTATGGAACAACGCCTAAATCACTTATCTCGATAATGTCAATTGAAAAATTAACCGGAGAAAAATACTACATGGAAAAATAATATCAACACGCTTCTTATTGTCGATGACAAGAAGTTTGTTCTCACAAAGGAATGTCCTCCTGCACTTGCACTTAATGCCACACGAAATGTTCGTGAGGCGCTTGATCATTGGAATAATGCAAACGAAAAGGGAAGGGTCTACATCTTGGCAAGTGTCTCAGACATTCTAGCCAAGAAACTTGAGAACATGGTAACTTCTTTAGAGATGATGAGAACCCTTTATAAAATTTTTGGGCAATCGTCGTCTCAAGTAAAGCATGATGCTCTCCGAGTTGTAATAGATAAAGCTAGTCAGGTAAACTTTATTCTTGAGATGCTACCAAGTAGCTTCTTATAATTTAATAGCAATATTATTATGAAGAAGATTGTCTTTGACCCCCTACTCTTCTTAATAAACTTCAAACCTTCAAGTCCATGATGAAAGTCAAGGAAAAAAAGGTAGAGGCAAATATTGTCACCAAGGATAAGTGTTCTGGAACCACGGGTTTAGGGACCAAGCCTAAAAGTCGGACCTTCTAG

mRNA sequence

ATGCATGCTCTTATTGGAATCAGAGCTTTGGCTCATATGGAATGTCCTCCTGCACTTGCACTTAATGCCACACGAAATGTTCGTGAGGCGCTTGATCATTGGAATAATGCAAACGAAAAGGGAAGGGTCTACATCTTGGCAAGTGTCTCAGACATTCTAGCCAAGAAACTTGAGAACATGGTAACTTCTTTAGAGATGATGAGAACCCTTTATAAAATTTTTGGGCAATCGTCGTCTCAAGTAAAGCATGATGCTCTCCGAGTTGTAATAGATAAAGCTAGTCAGTCCATGATGAAAGTCAAGGAAAAAAAGGTAGAGGCAAATATTGTCACCAAGGATAAGTGTTCTGGAACCACGGGTTTAGGGACCAAGCCTAAAAGTCGGACCTTCTAG

Coding sequence (CDS)

ATGCATGCTCTTATTGGAATCAGAGCTTTGGCTCATATGGAATGTCCTCCTGCACTTGCACTTAATGCCACACGAAATGTTCGTGAGGCGCTTGATCATTGGAATAATGCAAACGAAAAGGGAAGGGTCTACATCTTGGCAAGTGTCTCAGACATTCTAGCCAAGAAACTTGAGAACATGGTAACTTCTTTAGAGATGATGAGAACCCTTTATAAAATTTTTGGGCAATCGTCGTCTCAAGTAAAGCATGATGCTCTCCGAGTTGTAATAGATAAAGCTAGTCAGTCCATGATGAAAGTCAAGGAAAAAAAGGTAGAGGCAAATATTGTCACCAAGGATAAGTGTTCTGGAACCACGGGTTTAGGGACCAAGCCTAAAAGTCGGACCTTCTAG

Protein sequence

MHALIGIRALAHMECPPALALNATRNVREALDHWNNANEKGRVYILASVSDILAKKLENMVTSLEMMRTLYKIFGQSSSQVKHDALRVVIDKASQSMMKVKEKKVEANIVTKDKCSGTTGLGTKPKSRTF

Homology

[Close]

BLAST of Sed0010021 vs. NCBI nr
Match: KAA0032020.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 1.8e-15
Identity = 47/89 (52.81%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 14  ECPPALALNATRNVREALDHWNNANEKGRVYILASVSDILAKKLENMVTSLEMMRTLYKI 73
           ECP   A+NATR VRE  DHW  ANEK R YILAS+S +LAKK E M+T+ E+M +L ++
Sbjct: 42  ECPQVQAVNATRTVREPYDHWAKANEKARAYILASLSKVLAKKHELMLTAHEIMDSLQEM 101

Query: 74  FGQSSSQVKHDALRVVIDKASQSMMKVKE 103
           FGQ+S Q+KHDAL+ + +        V+E
Sbjct: 102 FGQASYQIKHDALKYIYNARMNEGASVRE 130

[Close]

BLAST of Sed0010021 vs. NCBI nr
Match: KAA0037371.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 3.0e-15
Identity = 59/148 (39.86%), Postives = 79/148 (53.38%), Query Frame = 0


Query: 14  ECPPALALNATRNVREALDHWNNANEKGRVYILASVSDILAKKLENMVTSLEMMRTLYKI 73
           ECP   A NATR VREA + W  ANEK R YILAS+S++LAKK E+M+T+ E+M +L ++
Sbjct: 8   ECPQVSAANATRTVREAYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEM 67

Query: 74  FGQSSSQVKHDALR-------------------------------VVIDKASQ------- 115
           FGQ+S Q+KHDAL+                                VID+ASQ       
Sbjct: 68  FGQTSYQIKHDALKYIYNARMNEGASVREHVLNMMIHFNVAEMKEAVIDEASQIAYTLTT 127

[Close]

BLAST of Sed0010021 vs. NCBI nr
Match: KAA0063050.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 3.0e-15
Identity = 45/90 (50.00%), Postives = 63/90 (70.00%), Query Frame = 0


Query: 13  MECPPALALNATRNVREALDHWNNANEKGRVYILASVSDILAKKLENMVTSLEMMRTLYK 72
           MECP   A NAT+ VREA +HW   NEK R YILAS+S++LAKK E+M+T+ E+M +  +
Sbjct: 1   MECPQVPAANATQTVREAHEHWVKVNEKARAYILASLSEVLAKKHESMLTTCEIMDSFQE 60

Query: 73  IFGQSSSQVKHDALRVVIDKASQSMMKVKE 103
           +FGQ+S Q+KHDAL+ + +        V+E
Sbjct: 61  MFGQASYQIKHDALKYIYNSCINEGTSVRE 90

[Close]

BLAST of Sed0010021 vs. NCBI nr
Match: KAA0051847.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK21397.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 6.7e-15
Identity = 46/89 (51.69%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 14  ECPPALALNATRNVREALDHWNNANEKGRVYILASVSDILAKKLENMVTSLEMMRTLYKI 73
           ECP   A NATR VREA + W  ANEK R YILAS+S +LAKK E+M+T+ E+M +L ++
Sbjct: 42  ECPQVPAANATRTVREAYERWAKANEKARAYILASLSKVLAKKHESMLTTREIMDSLQEM 101

Query: 74  FGQSSSQVKHDALRVVIDKASQSMMKVKE 103
           FGQ+S Q+KHDAL+ + +        V+E
Sbjct: 102 FGQASYQIKHDALKYIYNARMNEGASVRE 130

[Close]

BLAST of Sed0010021 vs. NCBI nr
Match: KAA0054309.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 6.7e-15
Identity = 45/89 (50.56%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 14  ECPPALALNATRNVREALDHWNNANEKGRVYILASVSDILAKKLENMVTSLEMMRTLYKI 73
           ECP   A NATR VRE  + W   NEK R YILAS+S++LAKK E+M+T+ E+M +L ++
Sbjct: 42  ECPQVPAANATRTVREPYERWAKENEKARAYILASLSEVLAKKHESMLTAREIMNSLQEM 101

Query: 74  FGQSSSQVKHDALRVVIDKASQSMMKVKE 103
           FGQ+S Q+KHDAL+ +I+        V+E
Sbjct: 102 FGQASYQIKHDALKYIINARMNEGASVRE 130

[Close]

BLAST of Sed0010021 vs. ExPASy TrEMBL
Match: A0A5A7SMN4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G001190 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 8.6e-16
Identity = 47/89 (52.81%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 14  ECPPALALNATRNVREALDHWNNANEKGRVYILASVSDILAKKLENMVTSLEMMRTLYKI 73
           ECP   A+NATR VRE  DHW  ANEK R YILAS+S +LAKK E M+T+ E+M +L ++
Sbjct: 42  ECPQVQAVNATRTVREPYDHWAKANEKARAYILASLSKVLAKKHELMLTAHEIMDSLQEM 101

Query: 74  FGQSSSQVKHDALRVVIDKASQSMMKVKE 103
           FGQ+S Q+KHDAL+ + +        V+E
Sbjct: 102 FGQASYQIKHDALKYIYNARMNEGASVRE 130

[Close]

BLAST of Sed0010021 vs. ExPASy TrEMBL
Match: A0A5A7T706 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold278G00760 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.5e-15
Identity = 59/148 (39.86%), Postives = 79/148 (53.38%), Query Frame = 0


Query: 14  ECPPALALNATRNVREALDHWNNANEKGRVYILASVSDILAKKLENMVTSLEMMRTLYKI 73
           ECP   A NATR VREA + W  ANEK R YILAS+S++LAKK E+M+T+ E+M +L ++
Sbjct: 8   ECPQVSAANATRTVREAYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEM 67

Query: 74  FGQSSSQVKHDALR-------------------------------VVIDKASQ------- 115
           FGQ+S Q+KHDAL+                                VID+ASQ       
Sbjct: 68  FGQTSYQIKHDALKYIYNARMNEGASVREHVLNMMIHFNVAEMKEAVIDEASQIAYTLTT 127

[Close]

BLAST of Sed0010021 vs. ExPASy TrEMBL
Match: A0A5A7V728 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G001640 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.5e-15
Identity = 45/90 (50.00%), Postives = 63/90 (70.00%), Query Frame = 0


Query: 13  MECPPALALNATRNVREALDHWNNANEKGRVYILASVSDILAKKLENMVTSLEMMRTLYK 72
           MECP   A NAT+ VREA +HW   NEK R YILAS+S++LAKK E+M+T+ E+M +  +
Sbjct: 1   MECPQVPAANATQTVREAHEHWVKVNEKARAYILASLSEVLAKKHESMLTTCEIMDSFQE 60

Query: 73  IFGQSSSQVKHDALRVVIDKASQSMMKVKE 103
           +FGQ+S Q+KHDAL+ + +        V+E
Sbjct: 61  MFGQASYQIKHDALKYIYNSCINEGTSVRE 90

[Close]

BLAST of Sed0010021 vs. ExPASy TrEMBL
Match: A0A5A7UBR0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00440 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.3e-15
Identity = 46/89 (51.69%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 14  ECPPALALNATRNVREALDHWNNANEKGRVYILASVSDILAKKLENMVTSLEMMRTLYKI 73
           ECP   A NATR VREA + W  ANEK R YILAS+S +LAKK E+M+T+ E+M +L ++
Sbjct: 42  ECPQVPAANATRTVREAYERWAKANEKARAYILASLSKVLAKKHESMLTTREIMDSLQEM 101

Query: 74  FGQSSSQVKHDALRVVIDKASQSMMKVKE 103
           FGQ+S Q+KHDAL+ + +        V+E
Sbjct: 102 FGQASYQIKHDALKYIYNARMNEGASVRE 130

[Close]

BLAST of Sed0010021 vs. ExPASy TrEMBL
Match: A0A5A7ULH1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G00280 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.3e-15
Identity = 45/89 (50.56%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 14  ECPPALALNATRNVREALDHWNNANEKGRVYILASVSDILAKKLENMVTSLEMMRTLYKI 73
           ECP   A NATR VRE  + W   NEK R YILAS+S++LAKK E+M+T+ E+M +L ++
Sbjct: 42  ECPQVPAANATRTVREPYERWAKENEKARAYILASLSEVLAKKHESMLTAREIMNSLQEM 101

Query: 74  FGQSSSQVKHDALRVVIDKASQSMMKVKE 103
           FGQ+S Q+KHDAL+ +I+        V+E
Sbjct: 102 FGQASYQIKHDALKYIINARMNEGASVRE 130

The following BLAST results are available for this feature:

BLAST of Sed0010021 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032020.1	1.8e-15	52.81	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0037371.1	3.0e-15	39.86	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0063050.1	3.0e-15	50.00	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0051847.1	6.7e-15	51.69	gag/pol protein [Cucumis melo var. makuwa] >TYK21397.1 gag/pol protein [Cucumis ...	[more]
KAA0054309.1	6.7e-15	50.56	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Sed0010021 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0010021 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMN4	8.6e-16	52.81	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G0011...	[more]
A0A5A7T706	1.5e-15	39.86	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold278G0076...	[more]
A0A5A7V728	1.5e-15	50.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0016...	[more]
A0A5A7UBR0	3.3e-15	51.69	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G0044...	[more]
A0A5A7ULH1	3.3e-15	50.56	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G00280...	[more]

BLAST of Sed0010021 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010021.1	Sed0010021.1	mRNA