Sed0009920 (gene) Chayote v1

Overview


Name	Sed0009920
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG10: 34341293 .. 34343147 (+)
RNA-Seq Expression	Sed0009920
Synteny	Sed0009920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCAATACTAAGAACCAAACATTCCCTTTTCATTTAGAGGAAGAAGAAAGATTACAAGTTTTGAAAAAGAAAAATAGAGAGAAATGGAGGATTCAACTGAAAACACAAAGAAGCTTATTAGTGAAAACCATGTTCCTCATCGTCCTTTCATTTTTCCCTTTTACAACTCGGTCTTGAAAGTTTTCATGGCAATTTTCAAGGTTCTAGGGTTCTTTGTTCGTCGCCCGATATCGCTGCCACCGCAAGATTCCTACACCGGTTGCTCGTGCCCACCTCCGAAAGCGGGTAACCCGCCTGTTGATGAATCGGTAAGCGTCTATCTTCTAGGGTAGAGCTAGAAATTTATTTGGGAAGGAGTCAAGTTTTGTATTCTTATATATTGCATTGATGATCTCAATTCTAAAGTTTTGTGGTACAAATTAGGAACACAAATTAAAGCATTAAGTGTAACTGCAATTCTAGTGTAATTTAAATAAATGTTTCAATTATATCATGAAAAACGATTGCGGTTAAAATAGTCAAGCAAAAGAACATGTACAACTAGGATAATGAGTATTCTCAAAAAAAAAAAAAAAAAAACTAGGATAATGAGTGATTTTTCATGATTATAGTAATTGTTTAGTAGATAAGGCAATTTGTGATATACAAAAGCTTTTAATGGGACTAGTTTTTAAGTAAACCAATGATTTACTTATATAAGTTCAACAATATACAGAATCATGTATTCACGATCAAGATATTATGAGTTTGAATAACCTTTTCAAAATGAGTTAAAAAAGATACGTGTGAAATAAAAACTCTAAAATCTCTTAATTTAATAAGAAGCCTCTAAACTAGTTGAGTAATATTCACGTGTCTATAGTCATTTACTAATTAATAAAAAAAAACTAGATTAATAGAGAATTTTGCATATATAATAAAAATAAATAAAATTAAAGAAAAAATAATCTATGAATAACAACTTTGAGAAGAAATTTGTGCATAGTAAACTATTTAATCAATGTTACATACAATTTTCAATCAGTATAATCTTTCATTACTGTCACAAATAGTTTTCAATCAATACAGAGTCTCCTATCTACGGGATGAAGGGAATAATTGAAATGTGAAAACAAAAAAAACAAAAAACAAAAAAAAAACTTAAATATTTATAAAAAAAAAATGTTACAATTAAAATAGACCACAAAAAAAGGGCCACGTCAATCAAATTCTCTATACAATAATCTTAAAAATCAATCATAAAAAACTTTCAAATGTTTCTAAGTATCACATATATTCTGAATTTCATTACAAAGTATCGCCAAATGATCTGATTGGGACGATACAATTTTATATTCTAAAAATTTAAGGGAGCTTGTAAAATCAGAGATAAGGCATTAAAATCTTCTAACATTTCATATAAAATAATCTTCATTTTTCGCTCTTACACTATCACTCCATTCTTTCTTCTTGCCATGTTAATATCTTTCTTATATTTTCTCATGTAGATATAAGTTTAAGATTTAGGTCAAATTTAACTGTTGATAATTATATATTATACAAAGTAAGGCTTAAAAGTTTACATGGATTTGGTCGTTTTGCAGGTACAAGGACAAGGTAGGTTTAATCGTCCTCCGCCTCCTCCTCCGAGCAACGGTGGCGGTCCGATGACTAACCTATCTCCATCGGACCCAAACGATGAACAGTAGTTCTTGAATGTTACTTGTATTGATTTAGTCGTACTTTTGTTTTTGTGAAAATTATTGTTAAGATTTAATAAAACTTCCTAATGAATTAGACATCTAATATATGTTGTAATTTACAAAGTTTCGGCCCTTTTGTTCTTTTTCTTAAAGGAATTTGCATTGATGGAGC

mRNA sequence

ATTCAATACTAAGAACCAAACATTCCCTTTTCATTTAGAGGAAGAAGAAAGATTACAAGTTTTGAAAAAGAAAAATAGAGAGAAATGGAGGATTCAACTGAAAACACAAAGAAGCTTATTAGTGAAAACCATGTTCCTCATCGTCCTTTCATTTTTCCCTTTTACAACTCGGTCTTGAAAGTTTTCATGGCAATTTTCAAGGTTCTAGGGTTCTTTGTTCGTCGCCCGATATCGCTGCCACCGCAAGATTCCTACACCGGTTGCTCGTGCCCACCTCCGAAAGCGGGTAACCCGCCTGTTGATGAATCGGTACAAGGACAAGGTAGGTTTAATCGTCCTCCGCCTCCTCCTCCGAGCAACGGTGGCGGTCCGATGACTAACCTATCTCCATCGGACCCAAACGATGAACAGTAGTTCTTGAATGTTACTTGTATTGATTTAGTCGTACTTTTGTTTTTGTGAAAATTATTGTTAAGATTTAATAAAACTTCCTAATGAATTAGACATCTAATATATGTTGTAATTTACAAAGTTTCGGCCCTTTTGTTCTTTTTCTTAAAGGAATTTGCATTGATGGAGC

Coding sequence (CDS)

ATGGAGGATTCAACTGAAAACACAAAGAAGCTTATTAGTGAAAACCATGTTCCTCATCGTCCTTTCATTTTTCCCTTTTACAACTCGGTCTTGAAAGTTTTCATGGCAATTTTCAAGGTTCTAGGGTTCTTTGTTCGTCGCCCGATATCGCTGCCACCGCAAGATTCCTACACCGGTTGCTCGTGCCCACCTCCGAAAGCGGGTAACCCGCCTGTTGATGAATCGGTACAAGGACAAGGTAGGTTTAATCGTCCTCCGCCTCCTCCTCCGAGCAACGGTGGCGGTCCGATGACTAACCTATCTCCATCGGACCCAAACGATGAACAGTAG

Protein sequence

MEDSTENTKKLISENHVPHRPFIFPFYNSVLKVFMAIFKVLGFFVRRPISLPPQDSYTGCSCPPPKAGNPPVDESVQGQGRFNRPPPPPPSNGGGPMTNLSPSDPNDEQ

Homology

[Close]

BLAST of Sed0009920 vs. NCBI nr
Match: XP_008464347.1 (PREDICTED: uncharacterized protein LOC103502255 [Cucumis melo] >KAA0039202.1 uncharacterized protein E6C27_scaffold121G001200 [Cucumis melo var. makuwa] >TYK18469.1 uncharacterized protein E5676_scaffold607G00390 [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-11
Identity = 45/102 (44.12%), Postives = 61/102 (59.80%), Query Frame = 0


Query: 1   MEDSTENTKKLISENHVPHRPFIFPFYNSVLKVFMAIFKVLGFFVRRPISLPPQDSYTGC 60
           +E+S ENTK+L  +    H PF    +N V ++ MA ++ LGF V RPI    +DSY   
Sbjct: 14  IENSNENTKELNDDVVHDHCPFFLSIFNLVFQITMAFYRFLGFRVHRPILSSSEDSYPVD 73

Query: 61  SCPPPKAGNPPVDESVQGQGRF---NRPPPPPPSNGGGPMTN 100
           S PPP   +PP+++  + +  F   N PPPPPPSNGGG  TN
Sbjct: 74  SQPPPTTVDPPIEDPGEEEREFARRNPPPPPPPSNGGGGRTN 115

[Close]

BLAST of Sed0009920 vs. NCBI nr
Match: XP_031743811.1 (uncharacterized protein LOC116404676 [Cucumis sativus] >KAE8646593.1 hypothetical protein Csa_005180 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 2.1e-09
Identity = 43/103 (41.75%), Postives = 59/103 (57.28%), Query Frame = 0


Query: 1   MEDSTENTKKLISENHV-PHRPFIFPFYNSVLKVFMAIFKVLGFFVRRPISLPPQDSYTG 60
           +E+S ENTKK+  ++ V  H PF    +  V ++ MA ++ LGF V        +DSY  
Sbjct: 14  IENSNENTKKMNDDDDVHDHCPFFLSIFKLVFQITMAFYRFLGFCVPSSTLPSSEDSYPV 73

Query: 61  CSCPPPKAGNPPVDESVQGQGRF---NRPPPPPPSNGGGPMTN 100
              PPPK  +PP++ S + +  F   N PPPPPPSNGGG  TN
Sbjct: 74  DPHPPPKTDDPPIENSGEEEREFARRNPPPPPPPSNGGGGRTN 116

[Close]

BLAST of Sed0009920 vs. NCBI nr
Match: XP_008464348.1 (PREDICTED: uncharacterized protein LOC103502256 [Cucumis melo])

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-04
Identity = 43/105 (40.95%), Postives = 58/105 (55.24%), Query Frame = 0


Query: 1   MEDSTENTKKLI---SENH-VPHRPFIFPFYNSVLKVFMAIFKVLGFFVR----RPISLP 60
           M+DSTE +KK     S+ H +PH   I   ++S+L+ F+AI +  GF       RP S  
Sbjct: 40  MKDSTEKSKKQADNESDLHPIPHCSIILTIFDSILQAFIAILRFFGFKRNAPPYRPASSS 99

Query: 61  PQDSYTGCSCPPPKAGNPPVDESVQGQG--RFNRPPPPPPSNGGG 96
            +D YT  S PP  A +PP D+S +     R + PPPPP S GGG
Sbjct: 100 LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPPPPWSTGGG 144

[Close]

BLAST of Sed0009920 vs. NCBI nr
Match: KAA0039201.1 (uncharacterized protein E6C27_scaffold121G001180 [Cucumis melo var. makuwa] >TYK18468.1 uncharacterized protein E5676_scaffold607G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-04
Identity = 43/105 (40.95%), Postives = 58/105 (55.24%), Query Frame = 0


Query: 1   MEDSTENTKKLI---SENH-VPHRPFIFPFYNSVLKVFMAIFKVLGFFVR----RPISLP 60
           M+DSTE +KK     S+ H +PH   I   ++S+L+ F+AI +  GF       RP S  
Sbjct: 1   MKDSTEKSKKQADNESDLHPIPHCSIILTIFDSILQAFIAILRFFGFKRNAPPYRPASSS 60

Query: 61  PQDSYTGCSCPPPKAGNPPVDESVQGQG--RFNRPPPPPPSNGGG 96
            +D YT  S PP  A +PP D+S +     R + PPPPP S GGG
Sbjct: 61  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPPPPWSTGGG 105

[Close]

BLAST of Sed0009920 vs. NCBI nr
Match: XP_038886557.1 (uncharacterized protein LOC120076731 [Benincasa hispida])

HSP 1 Score: 55.5 bits (132), Expect = 3.4e-04
Identity = 42/107 (39.25%), Postives = 55/107 (51.40%), Query Frame = 0


Query: 3   DSTENTKKLISENHV----PHRPFIFPFYNSVLKVFMAIFKVLGFFVR----RPISLPPQ 62
           DS E +KK + ++       H P      +S+L+ F+AI + LGF       RP    P+
Sbjct: 2   DSIEKSKKQVDDDDETDLHSHCPIFLIICDSILQAFIAILRFLGFNHNGPPYRPAPSSPE 61

Query: 63  DSYTGCSCPPPKAGNPPVDESVQGQG--RFNRPPPPPPSNGGGPMTN 100
           D YT  S PP  A NPP DES +     R + PPPPP S GGG  T+
Sbjct: 62  DCYTDGSDPPSTAVNPPDDESEEESEYYRPHVPPPPPWSTGGGGQTD 108

[Close]

BLAST of Sed0009920 vs. ExPASy TrEMBL
Match: A0A5A7T6U0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold607G00390 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 8.2e-12
Identity = 45/102 (44.12%), Postives = 61/102 (59.80%), Query Frame = 0


Query: 1   MEDSTENTKKLISENHVPHRPFIFPFYNSVLKVFMAIFKVLGFFVRRPISLPPQDSYTGC 60
           +E+S ENTK+L  +    H PF    +N V ++ MA ++ LGF V RPI    +DSY   
Sbjct: 14  IENSNENTKELNDDVVHDHCPFFLSIFNLVFQITMAFYRFLGFRVHRPILSSSEDSYPVD 73

Query: 61  SCPPPKAGNPPVDESVQGQGRF---NRPPPPPPSNGGGPMTN 100
           S PPP   +PP+++  + +  F   N PPPPPPSNGGG  TN
Sbjct: 74  SQPPPTTVDPPIEDPGEEEREFARRNPPPPPPPSNGGGGRTN 115

[Close]

BLAST of Sed0009920 vs. ExPASy TrEMBL
Match: A0A1S3CMT1 (uncharacterized protein LOC103502255 OS=Cucumis melo OX=3656 GN=LOC103502255 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 8.2e-12
Identity = 45/102 (44.12%), Postives = 61/102 (59.80%), Query Frame = 0


Query: 1   MEDSTENTKKLISENHVPHRPFIFPFYNSVLKVFMAIFKVLGFFVRRPISLPPQDSYTGC 60
           +E+S ENTK+L  +    H PF    +N V ++ MA ++ LGF V RPI    +DSY   
Sbjct: 14  IENSNENTKELNDDVVHDHCPFFLSIFNLVFQITMAFYRFLGFRVHRPILSSSEDSYPVD 73

Query: 61  SCPPPKAGNPPVDESVQGQGRF---NRPPPPPPSNGGGPMTN 100
           S PPP   +PP+++  + +  F   N PPPPPPSNGGG  TN
Sbjct: 74  SQPPPTTVDPPIEDPGEEEREFARRNPPPPPPPSNGGGGRTN 115

[Close]

BLAST of Sed0009920 vs. ExPASy TrEMBL
Match: A0A0A0K8Z6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020170 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.0e-06
Identity = 35/84 (41.67%), Postives = 46/84 (54.76%), Query Frame = 0


Query: 19  HRPFIFPFYNSVLKVFMAIFKVLGFFVRRPISLPPQDSYTGCSCPPPKAGNPPVDESVQG 78
           H PF    +  V ++ MA ++ LGF V        +DSY     PPPK  +PP++ S + 
Sbjct: 10  HCPFFLSIFKLVFQITMAFYRFLGFCVPSSTLPSSEDSYPVDPHPPPKTDDPPIENSGEE 69

Query: 79  QGRF---NRPPPPPPSNGGGPMTN 100
           +  F   N PPPPPPSNGGG  TN
Sbjct: 70  EREFARRNPPPPPPPSNGGGGRTN 93

[Close]

BLAST of Sed0009920 vs. ExPASy TrEMBL
Match: A0A5D3D4J4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold607G00380 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.5e-05
Identity = 43/105 (40.95%), Postives = 58/105 (55.24%), Query Frame = 0


Query: 1   MEDSTENTKKLI---SENH-VPHRPFIFPFYNSVLKVFMAIFKVLGFFVR----RPISLP 60
           M+DSTE +KK     S+ H +PH   I   ++S+L+ F+AI +  GF       RP S  
Sbjct: 1   MKDSTEKSKKQADNESDLHPIPHCSIILTIFDSILQAFIAILRFFGFKRNAPPYRPASSS 60

Query: 61  PQDSYTGCSCPPPKAGNPPVDESVQGQG--RFNRPPPPPPSNGGG 96
            +D YT  S PP  A +PP D+S +     R + PPPPP S GGG
Sbjct: 61  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPPPPWSTGGG 105

[Close]

BLAST of Sed0009920 vs. ExPASy TrEMBL
Match: A0A1S3CLD8 (uncharacterized protein LOC103502256 OS=Cucumis melo OX=3656 GN=LOC103502256 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.5e-05
Identity = 43/105 (40.95%), Postives = 58/105 (55.24%), Query Frame = 0


Query: 1   MEDSTENTKKLI---SENH-VPHRPFIFPFYNSVLKVFMAIFKVLGFFVR----RPISLP 60
           M+DSTE +KK     S+ H +PH   I   ++S+L+ F+AI +  GF       RP S  
Sbjct: 40  MKDSTEKSKKQADNESDLHPIPHCSIILTIFDSILQAFIAILRFFGFKRNAPPYRPASSS 99

Query: 61  PQDSYTGCSCPPPKAGNPPVDESVQGQG--RFNRPPPPPPSNGGG 96
            +D YT  S PP  A +PP D+S +     R + PPPPP S GGG
Sbjct: 100 LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPPPPWSTGGG 144

The following BLAST results are available for this feature:

BLAST of Sed0009920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464347.1	1.7e-11	44.12	PREDICTED: uncharacterized protein LOC103502255 [Cucumis melo] >KAA0039202.1 unc...	[more]
XP_031743811.1	2.1e-09	41.75	uncharacterized protein LOC116404676 [Cucumis sativus] >KAE8646593.1 hypothetica...	[more]
XP_008464348.1	1.5e-04	40.95	PREDICTED: uncharacterized protein LOC103502256 [Cucumis melo]	[more]
KAA0039201.1	1.5e-04	40.95	uncharacterized protein E6C27_scaffold121G001180 [Cucumis melo var. makuwa] >TYK...	[more]
XP_038886557.1	3.4e-04	39.25	uncharacterized protein LOC120076731 [Benincasa hispida]	[more]

BLAST of Sed0009920 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0009920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T6U0	8.2e-12	44.12	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CMT1	8.2e-12	44.12	uncharacterized protein LOC103502255 OS=Cucumis melo OX=3656 GN=LOC103502255 PE=...	[more]
A0A0A0K8Z6	3.0e-06	41.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020170 PE=4 SV=1	[more]
A0A5D3D4J4	7.5e-05	40.95	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CLD8	7.5e-05	40.95	uncharacterized protein LOC103502256 OS=Cucumis melo OX=3656 GN=LOC103502256 PE=...	[more]

BLAST of Sed0009920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0009920.1	Sed0009920.1	mRNA