Sed0009754 (gene) Chayote v1

Overview
NameSed0009754
Typegene
OrganismSechium edule (Chayote v1)
DescriptionEncodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: (RGF1), (RGF2), (RGF3), (RGF4), (RGF5), (RGF6), (RGF7), (RGF8) and (RGF9).
LocationLG04: 31852035 .. 31853210 (+)
RNA-Seq ExpressionSed0009754
SyntenySed0009754
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACAAATCCCTCCATTTCTCTTTCTTTCTTCATTCTCATGGCCATGCCTTCTTTGTTTCTCATTCTCCTATTCTTGTCAACTCTTTTGCATGCATGTGATGCTCGTCTTCTTCTATTATTCGAGAGTTCGAAGCTTCAACCAAGTCCGATCTCTCGAGGGCTTCGAATAGATCAGCCTCATAGAAGTATGGACAGCAACAATGATGACAAGGTTTCTTCTATGGAGATTGTTGGGATTGAAATACTCGAGGTATATTCTTACTAGAGATTTTAGTTAACTAAGATTCAAAGAAATACTTATTTTTTAATATCATAAAGTTATTGACACCATGTCATAATATAATCATTCACTTTTATAAAGTATCACATACTTTTTTTTATAAAAAAAACACCATATGTTGACATATGCAAGTATCACATACTTGAATTGAATATTATTAGAAAGTATGAGTATCTATCTAAAAATAACCAGTAATAAAAAGGACTAGCCTATTTAATTATCTAATAAATATTTGAAATCTCCTCAATAGTTGGGATCTTCAGCAAATATATGAAATTAATAAGAAGAAAAAAGAAACTTATTATTCAAATTAAAAGCTCAAATATATTCTGATGTAAGAATTATAAATTATGATAATTTCCATGATTTCTTTTTATCTTTTTTTTCAAAATAATCATTAATTGTATTCAAATTTGTATAAATTTGAAATCACATCATTTCTATCAACATCAACATTTAAACCATTTGGTGAAGACAAGCCATTAATAATACAGACAAAAGCATATGAAAGATAATTGCATGGAAAAGAGAGATGGAAATAGTTTTGTCATGAATGGACCTTGGAATTAATTTATAGCAGGGAATGAAGAAGCACAAAAGGATGGCAATGGAGCTTCCAATGAAAGACAAAGACAAAGACACAATGGTAAACTCTGATGATGAAAATGAGGTTGGAGAAGACATGGTAGTGATGGATTATGCACAACCCCACAGAAAACCTCCTATTCACAATGAAAACCCCTAGACCAATTTAATATTCTCAAATCTCTTATGGATATTCAAAACATGTTCTAAAAATCTATGTCTCTTTTCTTTTCTTTTTTTTTTTGAATAAAGAAAATTAGTATAAAACTATTATGTGAGGATTGTTCTTGGATGAATAGGGTTATGCAAAC

mRNA sequence

AACAAATCCCTCCATTTCTCTTTCTTTCTTCATTCTCATGGCCATGCCTTCTTTGTTTCTCATTCTCCTATTCTTGTCAACTCTTTTGCATGCATGTGATGCTCGTCTTCTTCTATTATTCGAGAGTTCGAAGCTTCAACCAAGTCCGATCTCTCGAGGGCTTCGAATAGATCAGCCTCATAGAAGTATGGACAGCAACAATGATGACAAGGTTTCTTCTATGGAGATTGTTGGGATTGAAATACTCGAGGGAATGAAGAAGCACAAAAGGATGGCAATGGAGCTTCCAATGAAAGACAAAGACAAAGACACAATGGTAAACTCTGATGATGAAAATGAGGTTGGAGAAGACATGGTAGTGATGGATTATGCACAACCCCACAGAAAACCTCCTATTCACAATGAAAACCCCTAGACCAATTTAATATTCTCAAATCTCTTATGGATATTCAAAACATGTTCTAAAAATCTATGTCTCTTTTCTTTTCTTTTTTTTTTTGAATAAAGAAAATTAGTATAAAACTATTATGTGAGGATTGTTCTTGGATGAATAGGGTTATGCAAAC

Coding sequence (CDS)

ATGGCCATGCCTTCTTTGTTTCTCATTCTCCTATTCTTGTCAACTCTTTTGCATGCATGTGATGCTCGTCTTCTTCTATTATTCGAGAGTTCGAAGCTTCAACCAAGTCCGATCTCTCGAGGGCTTCGAATAGATCAGCCTCATAGAAGTATGGACAGCAACAATGATGACAAGGTTTCTTCTATGGAGATTGTTGGGATTGAAATACTCGAGGGAATGAAGAAGCACAAAAGGATGGCAATGGAGCTTCCAATGAAAGACAAAGACAAAGACACAATGGTAAACTCTGATGATGAAAATGAGGTTGGAGAAGACATGGTAGTGATGGATTATGCACAACCCCACAGAAAACCTCCTATTCACAATGAAAACCCCTAG

Protein sequence

MAMPSLFLILLFLSTLLHACDARLLLLFESSKLQPSPISRGLRIDQPHRSMDSNNDDKVSSMEIVGIEILEGMKKHKRMAMELPMKDKDKDTMVNSDDENEVGEDMVVMDYAQPHRKPPIHNENP
Homology
BLAST of Sed0009754 vs. NCBI nr
Match: KAG7028383.1 (Root meristem growth factor 6 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 148.3 bits (373), Expect = 4.5e-32
Identity = 87/130 (66.92%), Postives = 102/130 (78.46%), Query Frame = 0

Query: 1   MAMP-SLFLILLFLSTLLHACDARLLLLFESSKLQPSPISRGLRIDQPHRSMDSNNDDKV 60
           M MP SLFL LLFLST LHACDARLL L  SS+L+P  IS G R +Q  +S+D +  + V
Sbjct: 1   MPMPTSLFLSLLFLSTFLHACDARLLKLCHSSRLEPCMISPGFRTNQLEKSLDESRSNDV 60

Query: 61  SSMEIVGIEILEGMKKHKRMAMELPM----KDKDKDTMVNSDDENEVGEDMVVMDYAQPH 120
           SSME VGIEIL+GMKK +R+AMELP+    +DKD D +VNS +ENEVGEDMVVMDYAQPH
Sbjct: 61  SSMENVGIEILKGMKKLRRLAMELPVRDIDRDKDIDKVVNS-EENEVGEDMVVMDYAQPH 120

Query: 121 RKPPIHNENP 126
           RKPPIHN+ P
Sbjct: 121 RKPPIHNQKP 129

BLAST of Sed0009754 vs. NCBI nr
Match: XP_023005579.1 (uncharacterized protein LOC111498521 [Cucurbita maxima])

HSP 1 Score: 147.9 bits (372), Expect = 5.8e-32
Identity = 88/132 (66.67%), Postives = 102/132 (77.27%), Query Frame = 0

Query: 1   MAMP-SLFLILLFLSTLLHACDARLLLLFESSKLQPSPISRGLRIDQPHRSMDSNNDDKV 60
           M MP SLFL LLFLST LHACDARLL L  SS+L+   IS G R+DQ  RS+D +  ++V
Sbjct: 1   MPMPTSLFLALLFLSTFLHACDARLLKLCHSSRLESCMISPGFRMDQLKRSLDKSKSNEV 60

Query: 61  SSMEIVGIEILEGMKKHKRMAMELPM------KDKDKDTMVNSDDENEVGEDMVVMDYAQ 120
           SS+E VGIEIL+GMKK +R+AMELP+      KDKD D +VNS +ENEVGEDMVVMDYAQ
Sbjct: 61  SSVENVGIEILKGMKKLRRLAMELPVRDRDRDKDKDIDKVVNS-EENEVGEDMVVMDYAQ 120

Query: 121 PHRKPPIHNENP 126
           PHRKPPIHN  P
Sbjct: 121 PHRKPPIHNRKP 131

BLAST of Sed0009754 vs. NCBI nr
Match: XP_023540680.1 (uncharacterized protein LOC111800973 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 145.2 bits (365), Expect = 3.8e-31
Identity = 82/129 (63.57%), Postives = 100/129 (77.52%), Query Frame = 0

Query: 1   MAMP-SLFLILLFLSTLLHACDARLLLLFESSKLQPSPISRGLRIDQPHRSMDSNNDDKV 60
           M MP S FL LLFLST LHACDARLL L  SS+L+   IS G R +Q  RS+D +  + V
Sbjct: 1   MPMPTSFFLALLFLSTFLHACDARLLKLCHSSRLESCLISPGFRTNQLERSLDESKSNDV 60

Query: 61  SSMEIVGIEILEGMKKHKRMAMELPMKDKDKDTMVN---SDDENEVGEDMVVMDYAQPHR 120
           SSME VGIEIL+GMKK +R+AMELP++D+D+D  ++   + +ENEVGEDMVVMDYAQPHR
Sbjct: 61  SSMENVGIEILKGMKKLRRLAMELPVRDRDRDKDIDKVVNSEENEVGEDMVVMDYAQPHR 120

Query: 121 KPPIHNENP 126
           KPPIHN+ P
Sbjct: 121 KPPIHNQKP 129

BLAST of Sed0009754 vs. NCBI nr
Match: XP_038905997.1 (uncharacterized protein LOC120091906 isoform X2 [Benincasa hispida])

HSP 1 Score: 134.4 bits (337), Expect = 6.7e-28
Identity = 79/129 (61.24%), Postives = 94/129 (72.87%), Query Frame = 0

Query: 3   MPSLFLILLFLSTLLHACDARLLLLFES----SKLQPSPISRGLRIDQPHRSMDSNNDDK 62
           MP LFLILL  S+ LHAC+AR L  FES    S+++P  IS+G+  DQP RS + +N DK
Sbjct: 1   MPYLFLILLIFSSTLHACEARCLRFFESSSFVSRIEPHSISQGIWADQPERSFEESNSDK 60

Query: 63  VSSME-IVGIEILEGMKKH-KRMAMELPMKDKDKDTMVNSDDENEVGEDMVVMDYAQPHR 122
           +S  E IVGIE+L+GMKKH  R+ ME PMK+K     V +  ENEVGEDMVVMDYAQPHR
Sbjct: 61  LSYKEIIVGIEMLKGMKKHGSRLVMEFPMKEK-----VLNSKENEVGEDMVVMDYAQPHR 120

Query: 123 KPPIHNENP 126
           KPPIHNE P
Sbjct: 121 KPPIHNEKP 124

BLAST of Sed0009754 vs. NCBI nr
Match: XP_038905996.1 (uncharacterized protein LOC120091906 isoform X1 [Benincasa hispida])

HSP 1 Score: 130.2 bits (326), Expect = 1.3e-26
Identity = 79/130 (60.77%), Postives = 94/130 (72.31%), Query Frame = 0

Query: 3   MPSLFLILLFLSTLLHACDARLLLLFES----SKLQPSPISRGLRIDQPHRSMDSNNDDK 62
           MP LFLILL  S+ LHAC+AR L  FES    S+++P  IS+G+  DQP RS + +N DK
Sbjct: 1   MPYLFLILLIFSSTLHACEARCLRFFESSSFVSRIEPHSISQGIWADQPERSFEESNSDK 60

Query: 63  VSSME-IVGIEIL-EGMKKH-KRMAMELPMKDKDKDTMVNSDDENEVGEDMVVMDYAQPH 122
           +S  E IVGIE+L +GMKKH  R+ ME PMK+K     V +  ENEVGEDMVVMDYAQPH
Sbjct: 61  LSYKEIIVGIEMLKQGMKKHGSRLVMEFPMKEK-----VLNSKENEVGEDMVVMDYAQPH 120

Query: 123 RKPPIHNENP 126
           RKPPIHNE P
Sbjct: 121 RKPPIHNEKP 125

BLAST of Sed0009754 vs. ExPASy Swiss-Prot
Match: Q93VK8 (Protein GOLVEN 1 OS=Arabidopsis thaliana OX=3702 GN=GLV1 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.4e-04
Identity = 19/23 (82.61%), Postives = 21/23 (91.30%), Query Frame = 0

Query: 101 EVGEDMVVMDYAQPHRKPPIHNE 124
           E GE++VVMDY QPHRKPPIHNE
Sbjct: 62  ETGEEVVVMDYPQPHRKPPIHNE 84

BLAST of Sed0009754 vs. ExPASy TrEMBL
Match: A0A6J1KZM9 (uncharacterized protein LOC111498521 OS=Cucurbita maxima OX=3661 GN=LOC111498521 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.8e-32
Identity = 88/132 (66.67%), Postives = 102/132 (77.27%), Query Frame = 0

Query: 1   MAMP-SLFLILLFLSTLLHACDARLLLLFESSKLQPSPISRGLRIDQPHRSMDSNNDDKV 60
           M MP SLFL LLFLST LHACDARLL L  SS+L+   IS G R+DQ  RS+D +  ++V
Sbjct: 1   MPMPTSLFLALLFLSTFLHACDARLLKLCHSSRLESCMISPGFRMDQLKRSLDKSKSNEV 60

Query: 61  SSMEIVGIEILEGMKKHKRMAMELPM------KDKDKDTMVNSDDENEVGEDMVVMDYAQ 120
           SS+E VGIEIL+GMKK +R+AMELP+      KDKD D +VNS +ENEVGEDMVVMDYAQ
Sbjct: 61  SSVENVGIEILKGMKKLRRLAMELPVRDRDRDKDKDIDKVVNS-EENEVGEDMVVMDYAQ 120

Query: 121 PHRKPPIHNENP 126
           PHRKPPIHN  P
Sbjct: 121 PHRKPPIHNRKP 131

BLAST of Sed0009754 vs. ExPASy TrEMBL
Match: A0A6J1DKL1 (uncharacterized protein LOC111021396 OS=Momordica charantia OX=3673 GN=LOC111021396 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.8e-23
Identity = 79/131 (60.31%), Postives = 91/131 (69.47%), Query Frame = 0

Query: 1   MAMPSLFLILLFLSTLLHACDA-RLLLLFESSKLQP-----SPISRGLRIDQPHRSMDSN 60
           MA PSL  ILL LST LHACDA   L LFE S         +PI +  R DQP RS++ N
Sbjct: 1   MATPSLLFILL-LST-LHACDACHRLQLFEYSNPVSRLGLLAPIPQEFRTDQPERSLNKN 60

Query: 61  NDDKVSSMEIVGIEILEGMKKHKRMAMELPMKDKDKDTMVNSDDENEVGEDMVVMDYAQP 120
              KVSS   +GI IL+GMKKHKR+AME  MK+K+K   + S +ENEVGEDMVVMDYAQP
Sbjct: 61  IIHKVSSSVEIGIGILKGMKKHKRLAMEFSMKEKEK---LMSYEENEVGEDMVVMDYAQP 120

Query: 121 HRKPPIHNENP 126
           HRKPPIHN+ P
Sbjct: 121 HRKPPIHNKKP 126

BLAST of Sed0009754 vs. ExPASy TrEMBL
Match: A0A0A0L298 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G020610 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.5e-20
Identity = 72/136 (52.94%), Postives = 88/136 (64.71%), Query Frame = 0

Query: 1   MAMPSLFLILLFLSTLLHACDARLLLLFESSKL-----QPSPISRG---LRIDQPHRSMD 60
           MAMP  FLILLF S+ LHACDA  L  F+SS       +   +S+G   +  DQ   S D
Sbjct: 1   MAMPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSMSQGIWSINHDQ-EGSFD 60

Query: 61  SNNDDKV--SSMEIVGIEILEGMKKH-KRMAMELPMKDKDKDTMVNSDDENEVGEDMVVM 120
            NN+D +  +   I+GIE+L+GMK+   R+ ME PMK+K     V +  ENEVGEDMVVM
Sbjct: 61  KNNNDNILHNKENIIGIEMLKGMKRDGSRLVMEFPMKEK-----VMNSKENEVGEDMVVM 120

Query: 121 DYAQPHRKPPIHNENP 126
           DYAQPHRKPPIHNE P
Sbjct: 121 DYAQPHRKPPIHNEKP 130

BLAST of Sed0009754 vs. ExPASy TrEMBL
Match: A0A438K320 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_009086 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.3e-05
Identity = 47/126 (37.30%), Postives = 69/126 (54.76%), Query Frame = 0

Query: 5   SLFLILLFLSTLLHACDARLLLLFESSKLQPSPISRGL-RIDQPHRSMDSNNDDKVSSME 64
           S  L+LL LS  +HAC+AR L +      +   +S+ +   DQ H+   S     + SME
Sbjct: 2   SSLLLLLLLSLSMHACNARHLGVIGKENREVHLLSKVVEEADQVHKI--SLPPRLIPSME 61

Query: 65  ----IVGIEILEGMKKHKRMAMELPMKDKDKDTMVNSDDENEVGEDMVVMDYAQPHRKPP 124
               +   +IL G K+H R+ +     D ++        E ++ ED+VVMDYAQPHRKPP
Sbjct: 62  TAEKLQPQQILPGWKRHSRLMLGSAPHDVEETV---DSKEGDIVEDIVVMDYAQPHRKPP 121

Query: 125 IHNENP 126
           IHN++P
Sbjct: 122 IHNKDP 122

BLAST of Sed0009754 vs. ExPASy TrEMBL
Match: A0A2U1NUH9 (Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA227890 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.3e-05
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 0

Query: 70  LEGMKKHKRMAMELPMKDKDKDTMVNSDDENEVGEDMVVMDYAQPHRKPPIHN 123
           +EG K H R  ME   K++D +  +N+  +N   ED VVMDYAQPHRKPPIHN
Sbjct: 91  IEGWKNHARSIME--SKEQDSNEAINNSKDNSSPEDAVVMDYAQPHRKPPIHN 141

BLAST of Sed0009754 vs. TAIR 10
Match: AT4G16515.1 (Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9). )

HSP 1 Score: 46.6 bits (109), Expect = 1.7e-05
Identity = 19/23 (82.61%), Postives = 21/23 (91.30%), Query Frame = 0

Query: 101 EVGEDMVVMDYAQPHRKPPIHNE 124
           E GE++VVMDY QPHRKPPIHNE
Sbjct: 62  ETGEEVVVMDYPQPHRKPPIHNE 84

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7028383.14.5e-3266.92Root meristem growth factor 6 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023005579.15.8e-3266.67uncharacterized protein LOC111498521 [Cucurbita maxima][more]
XP_023540680.13.8e-3163.57uncharacterized protein LOC111800973 [Cucurbita pepo subsp. pepo][more]
XP_038905997.16.7e-2861.24uncharacterized protein LOC120091906 isoform X2 [Benincasa hispida][more]
XP_038905996.11.3e-2660.77uncharacterized protein LOC120091906 isoform X1 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Q93VK82.4e-0482.61Protein GOLVEN 1 OS=Arabidopsis thaliana OX=3702 GN=GLV1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1KZM92.8e-3266.67uncharacterized protein LOC111498521 OS=Cucurbita maxima OX=3661 GN=LOC111498521... [more]
A0A6J1DKL11.8e-2360.31uncharacterized protein LOC111021396 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
A0A0A0L2981.5e-2052.94Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G020610 PE=4 SV=1[more]
A0A438K3201.3e-0537.30Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_009086 PE=4 SV=1[more]
A0A2U1NUH92.3e-0554.72Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA227890 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G16515.11.7e-0582.61Encodes a root meristem growth factor (RGF). Belongs to a family of functionall... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..57
NoneNo IPR availablePANTHERPTHR34961TRANSMEMBRANE PROTEINcoord: 71..125
NoneNo IPR availablePANTHERPTHR34961:SF7SUBFAMILY NOT NAMEDcoord: 71..125

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0009754.1Sed0009754.1mRNA
Sed0009754.2Sed0009754.2mRNA