Sed0009697 (gene) Chayote v1

Overview
NameSed0009697
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG09: 3339777 .. 3341034 (-)
RNA-Seq ExpressionSed0009697
SyntenySed0009697
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGGTATGCAATAAATTTAAACCACAAATTTGTTTTTTGTTCTGTTTAATTTAAATTTTAAATTCAACAATTTGAGATGGAAGATTATTCAGGTAATATTTATGATACTTTGGTGTATAAATTTTTTTATGGGTTTATCTGCCATATTAACTTTCAAACATGTTGATTTCAAAATAAATAAATAAATAAAAACTTCAAACATGGCCGCCTACAAAATTTGAGCAAAATCTTTTCATTCTTTATTACAATATTCACTGTTAATAAATCTCTATTTTTATGCAAGAAAAAATCTCTATTTTTTTTTAGTACAAATTAGGAGAAGAGAATTAAAAATACCGATTTCAGGAATCGAACTCGTGATTATGAGATGAAAATAGATTAACATCAAACAAAATAACTAATCGTGTCACCAATCAATTCAAAATTGTTTAAAATCTCTATTTCTCAGTACAATCAAAATTGAGTAATTTGAACTACAAACATCACAATTGAATCATTTGAGTTATACTTGCTTTAACTATCAAACTCGTAACTATGAAGTTGAAATAGATTAAAGACAAAATAACCAACTGCGCCACTGACCCTCGGCCAAAAGATAATAAGTTTAGACTCTACTTTCAAATATTGATAAAATCTAAGAAAAAGAATATTTAAATAACAATAAGAGAATTTTAAATAAATAATAATAATGGAAAGAAATTTATAAATGTAATTAGTGAGTTTAATGAAGTGATTTTTTTTCTTTTTAAAAGTTTAATAAAGTGAAATTGATTGAAAATAATAGATAAAATTATTCAAGATAATCAAACTAAACTGATTAATTAAGACCATGTAAGTTGTGACACTGATGTTGACAACCAAACAATGAAACTATTGCGTCACTCCTAATTTGTTAAGACCATGCAAATTAAAATATTATGCATGAAATATTTTAATAAAATTATTAAAATAAAAATAAAAATGGTAGAATTTTAACAATTTTTTTTTATTGGATGTGAAAAAGGGGTTGTAAGTGCAGAACATGACAAGGAGGATCCAGAAATAATCAGAGTAATTGGAATTTTTGAACTGAAAAAACTTGTCCGTCACATCCGAAACGGAGCCGAAAAAGTTGTTACCGTTATCAAAGTACAAACCGCCGCCGCCGCCGCCGCCGCAGAATCCGCCGGCGGCGGAAGCAGCAGTCGTGTCGAGGAAGAAAAAAGAGTTGCCGGAAAAGTGAGCGGCGGCGGAGCTGACGACAAGAAAAATTAA

mRNA sequence

ATGAAAGGGGTTGTAAGTGCAGAACATGACAAGGAGGATCCAGAAATAATCAGAGTAATTGGAATTTTTGAACTGAAAAAACTTGTCCGTCACATCCGAAACGGAGCCGAAAAAGTTGTTACCGTTATCAAAGTACAAACCGCCGCCGCCGCCGCCGCCGCAGAATCCGCCGGCGGCGGAAGCAGCAGTCGTGTCGAGGAAGAAAAAAGAGTTGCCGGAAAAGTGAGCGGCGGCGGAGCTGACGACAAGAAAAATTAA

Coding sequence (CDS)

ATGAAAGGGGTTGTAAGTGCAGAACATGACAAGGAGGATCCAGAAATAATCAGAGTAATTGGAATTTTTGAACTGAAAAAACTTGTCCGTCACATCCGAAACGGAGCCGAAAAAGTTGTTACCGTTATCAAAGTACAAACCGCCGCCGCCGCCGCCGCCGCAGAATCCGCCGGCGGCGGAAGCAGCAGTCGTGTCGAGGAAGAAAAAAGAGTTGCCGGAAAAGTGAGCGGCGGCGGAGCTGACGACAAGAAAAATTAA

Protein sequence

MKGVVSAEHDKEDPEIIRVIGIFELKKLVRHIRNGAEKVVTVIKVQTAAAAAAAESAGGGSSSRVEEEKRVAGKVSGGGADDKKN
Homology
BLAST of Sed0009697 vs. NCBI nr
Match: XP_022989967.1 (uncharacterized protein LOC111486994 [Cucurbita maxima])

HSP 1 Score: 67.8 bits (164), Expect = 5.2e-08
Identity = 41/98 (41.84%), Postives = 63/98 (64.29%), Query Frame = 0

Query: 1   MKGVVSAEHDKEDPEIIRVIGIFELKKLVRHIRNGAEKVVTVIKVQTAAAAAA------- 60
           MKG+ SAE D+E+PE+I V G+FE++KLV H+R G +K+VT+IK + AA   +       
Sbjct: 8   MKGIESAEVDEENPELITVKGVFEVQKLVAHLRRGVDKIVTIIKEENAAGGGSGGGEEGI 67

Query: 61  -AESAGGGSSSRVE-------EEKRVAGKVSGGGADDK 84
            A +AGGGS  ++E       +E++V    +GGG ++K
Sbjct: 68  EAAAAGGGSKQKIEITAAGGGKEQKVEIAAAGGGREEK 105

BLAST of Sed0009697 vs. NCBI nr
Match: KAG6600923.1 (hypothetical protein SDJN03_06156, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 64.7 bits (156), Expect = 4.4e-07
Identity = 40/97 (41.24%), Postives = 61/97 (62.89%), Query Frame = 0

Query: 2   KGVVSAEHDKEDPEIIRVIGIFELKKLVRHIRNGAEKVVTVIKVQTAAAAAA-------- 61
           +GV SAE D+E+PE+I V G+FE++KLV H+R G +K+VTVIK + AA   +        
Sbjct: 4   EGVESAEVDEENPELITVKGVFEVQKLVAHVRRGVDKIVTVIKEENAAGGGSGGGEEGIE 63

Query: 62  AESAGGGSSSRVE-------EEKRVAGKVSGGGADDK 84
           A +AGGGS  ++E        E+++    +GGG ++K
Sbjct: 64  AAAAGGGSEQKIEFAAAGDGREQKIEIAAAGGGREEK 100

BLAST of Sed0009697 vs. NCBI nr
Match: KAA0039827.1 (hypothetical protein E6C27_scaffold122G001020 [Cucumis melo var. makuwa] >TYK24671.1 hypothetical protein E5676_scaffold266G002210 [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 7.5e-07
Identity = 41/79 (51.90%), Postives = 55/79 (69.62%), Query Frame = 0

Query: 3   GVVSAEHDKEDPEIIRVIGIFELKKLVRHIRNGAEKVVTVIKVQTAAAAAAAESAGGGSS 62
           GV+SAE DKE PE+I V G+FE+KKL+ HIR G EK+VTVIK + A A ++  +A GG  
Sbjct: 48  GVISAEIDKEVPELITVKGVFEVKKLLAHIRKGVEKIVTVIKEEPATAGSS--TAVGG-- 107

Query: 63  SRVEEEKRVAGKVSGGGAD 82
              EE++  AG+ S  GA+
Sbjct: 108 ---EEQREAAGEGSSRGAN 119

BLAST of Sed0009697 vs. NCBI nr
Match: KAG7014642.1 (Heavy metal-associated isoprenylated plant protein 8, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 58.5 bits (140), Expect = 3.2e-05
Identity = 35/83 (42.17%), Postives = 53/83 (63.86%), Query Frame = 0

Query: 2  KGVVSAEHDKEDPEIIRVIGIFELKKLVRHIRNGAEKVVTVIKVQTAAAAAAAESAGGGS 61
          KGV S + ++E PE+IRV G+FE++KLV HIR G +K+VTV+K + A        AGGGS
Sbjct: 26 KGVQSVQVEEESPELIRVTGVFEVQKLVAHIRRGVDKIVTVVKQENA--------AGGGS 85

Query: 62 SSRVEEEKRVAGKVSGGGADDKK 85
              + E+++    +GG   D++
Sbjct: 86 G---DGEQQIEDAPTGGSPPDQR 97

BLAST of Sed0009697 vs. NCBI nr
Match: KAG6576124.1 (hypothetical protein SDJN03_26763, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.2 bits (139), Expect = 4.1e-05
Identity = 35/84 (41.67%), Postives = 54/84 (64.29%), Query Frame = 0

Query: 2   KGVVSAEHDKEDPEIIRVIGIFELKKLVRHIRNGAEKVVTVIKVQTAAAAAAAESAGGGS 61
           KGV S + +++ PE+IRV G+FE++KLV HIR G +K+VTVIK + A        AGGGS
Sbjct: 29  KGVQSVQVEEDSPELIRVTGVFEVQKLVAHIRRGVDKIVTVIKQENA--------AGGGS 88

Query: 62  SSRVEEEKRVAGKVSGGGADDKKN 86
               + E+++    +GG   D+++
Sbjct: 89  G---DGEQQIEDAPTGGSPPDQRS 101

BLAST of Sed0009697 vs. ExPASy TrEMBL
Match: A0A6J1JHA3 (uncharacterized protein LOC111486994 OS=Cucurbita maxima OX=3661 GN=LOC111486994 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.5e-08
Identity = 41/98 (41.84%), Postives = 63/98 (64.29%), Query Frame = 0

Query: 1   MKGVVSAEHDKEDPEIIRVIGIFELKKLVRHIRNGAEKVVTVIKVQTAAAAAA------- 60
           MKG+ SAE D+E+PE+I V G+FE++KLV H+R G +K+VT+IK + AA   +       
Sbjct: 8   MKGIESAEVDEENPELITVKGVFEVQKLVAHLRRGVDKIVTIIKEENAAGGGSGGGEEGI 67

Query: 61  -AESAGGGSSSRVE-------EEKRVAGKVSGGGADDK 84
            A +AGGGS  ++E       +E++V    +GGG ++K
Sbjct: 68  EAAAAGGGSKQKIEITAAGGGKEQKVEIAAAGGGREEK 105

BLAST of Sed0009697 vs. ExPASy TrEMBL
Match: A0A0A0KDJ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G094160 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.3e-08
Identity = 39/76 (51.32%), Postives = 50/76 (65.79%), Query Frame = 0

Query: 1  MKGVVSAEHDKEDPEIIRVIGIFELKKLVRHIRNGAEKVVTVIKVQTAAAA-------AA 60
          MKGV+SAE DKE PE+I V G+FE+KKL+ HIR G EK+ TVIK + A+A        AA
Sbjct: 1  MKGVISAEIDKEVPELITVKGVFEVKKLLAHIRRGVEKIATVIKEEPASAGGEDQQREAA 60

Query: 61 AESAGGGSSSRVEEEK 70
           E    G +  +EEE+
Sbjct: 61 GEGTSRGPNHEIEEEE 76

BLAST of Sed0009697 vs. ExPASy TrEMBL
Match: A0A5A7TE72 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002210 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.6e-07
Identity = 41/79 (51.90%), Postives = 55/79 (69.62%), Query Frame = 0

Query: 3   GVVSAEHDKEDPEIIRVIGIFELKKLVRHIRNGAEKVVTVIKVQTAAAAAAAESAGGGSS 62
           GV+SAE DKE PE+I V G+FE+KKL+ HIR G EK+VTVIK + A A ++  +A GG  
Sbjct: 48  GVISAEIDKEVPELITVKGVFEVKKLLAHIRKGVEKIVTVIKEEPATAGSS--TAVGG-- 107

Query: 63  SRVEEEKRVAGKVSGGGAD 82
              EE++  AG+ S  GA+
Sbjct: 108 ---EEQREAAGEGSSRGAN 119

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022989967.15.2e-0841.84uncharacterized protein LOC111486994 [Cucurbita maxima][more]
KAG6600923.14.4e-0741.24hypothetical protein SDJN03_06156, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0039827.17.5e-0751.90hypothetical protein E6C27_scaffold122G001020 [Cucumis melo var. makuwa] >TYK246... [more]
KAG7014642.13.2e-0542.17Heavy metal-associated isoprenylated plant protein 8, partial [Cucurbita argyros... [more]
KAG6576124.14.1e-0541.67hypothetical protein SDJN03_26763, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1JHA32.5e-0841.84uncharacterized protein LOC111486994 OS=Cucurbita maxima OX=3661 GN=LOC111486994... [more]
A0A0A0KDJ74.3e-0851.32Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G094160 PE=4 SV=1[more]
A0A5A7TE723.6e-0751.90Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..85
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0009697.1Sed0009697.1mRNA