Sed0009623 (gene) Chayote v1

Overview


Name	Sed0009623
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Glycine-rich RNA-binding protein 3
Location	LG01: 3855497 .. 3857613 (-)
RNA-Seq Expression	Sed0009623
Synteny	Sed0009623

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCGCACGAACACCTTGATGATGCTGATTGCTAGAAGAGCAGTAGTAACCAATTTCCAAAACCCAACTCCGAGCTTTCGGTGCTTCTGTTCTGAATCCTCCTCCTCGGCTCCTTTACCTTCTCCTTCTCCGACAAACAATAAGCTCTTTGTCGCAGGTTCGTGTCTCTTTCGCAACCCACCATGATTCCAAGTGGGCTTTTCATCGAATTCGATTCTGGTTGTTCATTTGGATTGTAGGGTTGTCGTGGTCCATGGACGAGAGATCCTTGAAAGATGCGTTTTCTTCCTTTGGAGAGGTTGCTGAAGGTATTTGTGGATGTTGAATTTAAGCCTTTGGTATAGGAGTTGCACTCTACGTGTTCGACGAAATGTCTACTCCAATTTTTAAATCTTCTTGCTGCATTTCCCATTCATAATTGATAATTCTGGTGCTAATCAATAGAGCGAAGCGATTAGCATATTGTTTCGTAGTGTATTTTACTATGAATTTGTGGTTTCCTTGGAACTTTGAGACGGCAAAACAATGAGAAATTTCGAGTATGAAAATTATTATTTGAGAGGAATTGGGAAACTGAAGGAATTTGAGAGGTGGGAAATTGAAATTTTGTATGAGCTGAAAGGAAATTTGAGGTCCATTGGTGAGGTTGGGATTGGGAATACAAACAAAGTGTTGTCCCCCATTGATTAAATAAAGGTAGACATTTGATTTAAGATGGAGCATTCATCTCCATTGGACGAGACTTTTTGGGTGAAACAAAAAATAAAGTCACGAAGACATATGTCAAAACTAGACAATATCATATATTAACTATATTAAATAGACTAGTTTAAAGATGTTTTTTTTTTATATCCTTGACTGTTCGAGTCAGCTTGCACGCACGTCGACTAATGTCATGGGACATACCGCCTGACCCTACAACATTTGGATGAAATTAGAAGACGGCCTTGAAACTTCAAGGTGATCATGTAGAAGTTTAATGTGCATTGGTGGTCGCTCTAAAACTTCACCAGCGAATAGCCTATGTAATTTTTTTGATATAGCTGGGATAACATTCAACGATCGCTGTTAAACTTCAGTGATCATCACTAAGGGAACTTGGATATCTATTGGTGATCAGTCTGAAACTTAATCAGCAATAAGCTTGTGGGGTCATGTTAAGTTTTGAATGCTGATATGGTTTCTTGACAGTCAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGCTTTGGATTTGTAAACTTCACAAACGACGATGATGCGCAATGTGCCAAAGATGCAATGGATGGAAAGGCAAGTCATTAATAAAAACCTGTATGAACTTATGGTCGTTTCACTCGCATAAATCAGTTGATGAAAGTTACCATGTCACTTGCAGGCATTATTAGGGCGTCCGTTGAGGATAAGCTTTGCCCTTGACAAGGTTCGTGGTGGTCCTGTTGTCGTTCCTCGACTTTCACACATAGACAACAATGTGAGCCGAAGGTCTTAAAACTCTCGGGTATTTCCTCTTTTTGTACCAACGACTATCTAAGAAGCCTAGAAACTAAGGTTTAGGTAACATAACTATGGCCTATAAGTCAAGTTTCGAGCATTTTGACTCTTGCTAGCATAATAGACATGTTTTAGGCATATATCAAGCATTTGTTAAATGCAATAAATGGACATAAATAACCAACATGGACTGGTCTAGTGATTAAGAGAGTCTTGAAGAATTAAGAGGTTATAGATTCATTTATAGTAGTTACCCACTTATAAATTAATTTCCTATAAGTTTTTTTGACAACCAAATGTTATAGGATTTGGTGGTTGTCCCGTAAAAATTATGAAGATCTACATAAATTGGTCTAAACACTCATAGATATCGATAAAAATGACATAAATAGTAATATAGGATAGAAATAATACATTTTGAGAGCAAAATATGCCAAATTGTTTTTAAGCATCAAGTGCATAAACTTATTGAATTTTCATGTCATATAAAAATGATATATAATTTAATAACTATGCCCTTGACATAAGTATCTGAATCAGGAGTTGGTTTTGCAGGTGAATACTGGACAAGTAGGGAACCAACATTATGAAGAACCTCAATTTAGGATTGTTTAA

mRNA sequence

ATGAATCGCACGAACACCTTGATGATGCTGATTGCTAGAAGAGCAGTAGTAACCAATTTCCAAAACCCAACTCCGAGCTTTCGGTGCTTCTGTTCTGAATCCTCCTCCTCGGCTCCTTTACCTTCTCCTTCTCCGACAAACAATAAGCTCTTTGTCGCAGGGTTGTCGTGGTCCATGGACGAGAGATCCTTGAAAGATGCGTTTTCTTCCTTTGGAGAGGTTGCTGAAGTCAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGCTTTGGATTTGTAAACTTCACAAACGACGATGATGCGCAATGTGCCAAAGATGCAATGGATGGAAAGGCATTATTAGGGCGTCCGTTGAGGATAAGCTTTGCCCTTGACAAGGTTCGTGGTGGTCCTGTTGTCGTTCCTCGACTTTCACACATAGACAACAATGTGAATACTGGACAAGTAGGGAACCAACATTATGAAGAACCTCAATTTAGGATTGTTTAA

Coding sequence (CDS)

ATGAATCGCACGAACACCTTGATGATGCTGATTGCTAGAAGAGCAGTAGTAACCAATTTCCAAAACCCAACTCCGAGCTTTCGGTGCTTCTGTTCTGAATCCTCCTCCTCGGCTCCTTTACCTTCTCCTTCTCCGACAAACAATAAGCTCTTTGTCGCAGGGTTGTCGTGGTCCATGGACGAGAGATCCTTGAAAGATGCGTTTTCTTCCTTTGGAGAGGTTGCTGAAGTCAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGCTTTGGATTTGTAAACTTCACAAACGACGATGATGCGCAATGTGCCAAAGATGCAATGGATGGAAAGGCATTATTAGGGCGTCCGTTGAGGATAAGCTTTGCCCTTGACAAGGTTCGTGGTGGTCCTGTTGTCGTTCCTCGACTTTCACACATAGACAACAATGTGAATACTGGACAAGTAGGGAACCAACATTATGAAGAACCTCAATTTAGGATTGTTTAA

Protein sequence

MNRTNTLMMLIARRAVVTNFQNPTPSFRCFCSESSSSAPLPSPSPTNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAKDAMDGKALLGRPLRISFALDKVRGGPVVVPRLSHIDNNVNTGQVGNQHYEEPQFRIV

Homology

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BLAST of Sed0009623 vs. NCBI nr
Match: XP_022986397.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 223.0 bits (567), Expect = 1.9e-54
Identity = 119/146 (81.51%), Postives = 128/146 (87.67%), Query Frame = 0


Query: 1   MNRTNTLMMLIARRAVVTNFQNPTPSFRCFCSESS---SSAPLPSPSPTNNKLFVAGLSW 60
           M+  N L ML+ARRA +TN Q P  SFRCFCS+SS   SSAP  SPS  NNKLFVAGLSW
Sbjct: 2   MSNANAL-MLLARRA-LTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSW 61

Query: 61  SMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAKDAMDGKALLGR 120
           S+DERSLKDAFSSFGEV EVRI+YDKDSGRSRGFGFVNFTN+DDAQ AKDAMDGKALLGR
Sbjct: 62  SLDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGR 121

Query: 121 PLRISFALDKVRGGPVVVPRLSHIDN 144
           PLRISFALDKVRGGPVVVPRLS+I+N
Sbjct: 122 PLRISFALDKVRGGPVVVPRLSNINN 145

[Close]

BLAST of Sed0009623 vs. NCBI nr
Match: XP_023512965.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 223.0 bits (567), Expect = 1.9e-54
Identity = 117/146 (80.14%), Postives = 126/146 (86.30%), Query Frame = 0


Query: 1   MNRTNTLMMLIARRAVVTNFQNPTPSFRCFCSE---SSSSAPLPSPSPTNNKLFVAGLSW 60
           M+ TNTLM L   R  +TN Q P  SFRCFCS+   SSSSAP  SPS  NNKLFVAGLSW
Sbjct: 2   MSNTNTLMPLF--RRALTNIQTPVLSFRCFCSQSSSSSSSAPSSSPSAPNNKLFVAGLSW 61

Query: 61  SMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAKDAMDGKALLGR 120
           S+DERSLKDAFSS+GEV EVRI+YDKDSGRSRGFGFVNFTN+DDAQ AKDAMDGKALLGR
Sbjct: 62  SLDERSLKDAFSSYGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGR 121

Query: 121 PLRISFALDKVRGGPVVVPRLSHIDN 144
           PLRISFALDKVRGGPVVVPRLS+I+N
Sbjct: 122 PLRISFALDKVRGGPVVVPRLSNINN 145

[Close]

BLAST of Sed0009623 vs. NCBI nr
Match: KAG6570903.1 (Glycine-rich RNA-binding protein 4, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 221.5 bits (563), Expect = 5.4e-54
Identity = 118/145 (81.38%), Postives = 127/145 (87.59%), Query Frame = 0


Query: 1   MNRTNTLMMLIARRAVVTNFQNPTPSFRCFCSE---SSSSAPLPSPSPTNNKLFVAGLSW 60
           M+  NTLM L ARRA +TN Q P  SFRCFCS+   SSSSAP  SPS  NNKLFVAGLSW
Sbjct: 2   MSNANTLMQL-ARRA-LTNIQTPVLSFRCFCSQSSSSSSSAPSSSPSAPNNKLFVAGLSW 61

Query: 61  SMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAKDAMDGKALLGR 120
           S+DERSLKDAFSSFGEV EVRI+YDKDSGRSRGFGFVNFTN+DDAQ AKDAMDGKALLGR
Sbjct: 62  SLDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGR 121

Query: 121 PLRISFALDKVRGGPVVVPRLSHID 143
           PLRISFALDKVRGGPVV+PRLS+I+
Sbjct: 122 PLRISFALDKVRGGPVVIPRLSNIN 144

[Close]

BLAST of Sed0009623 vs. NCBI nr
Match: XP_022944150.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 220.3 bits (560), Expect = 1.2e-53
Identity = 117/145 (80.69%), Postives = 127/145 (87.59%), Query Frame = 0


Query: 1   MNRTNTLMMLIARRAVVTNFQNPTPSFRCFCSESS---SSAPLPSPSPTNNKLFVAGLSW 60
           M+  N L ML+ARRA +TN Q P  SFRCFCS+SS   SSAP  SPS  NNKLFVAGLSW
Sbjct: 2   MSNANAL-MLLARRA-LTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSW 61

Query: 61  SMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAKDAMDGKALLGR 120
           S+DERSLKDAFSSFGEV EVRI+YDKDSGRSRGFGFVNFTN+DDAQ AKDAMDGKALLGR
Sbjct: 62  SLDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGR 121

Query: 121 PLRISFALDKVRGGPVVVPRLSHID 143
           PLRISFALDKVRGGPVV+PRLS+I+
Sbjct: 122 PLRISFALDKVRGGPVVIPRLSNIN 144

[Close]

BLAST of Sed0009623 vs. NCBI nr
Match: XP_022140496.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Momordica charantia])

HSP 1 Score: 219.2 bits (557), Expect = 2.7e-53
Identity = 118/145 (81.38%), Postives = 126/145 (86.90%), Query Frame = 0


Query: 1   MNRTNTLMMLIARRAVVTNFQNPTPSFRCFCSESSSSAPLPSPSPTNNKLFVAGLSWSMD 60
           M+ TNT  ML+ARR V+TN Q+ T    CFCS+SSSS    SPS  NNKLFVAGLSWSMD
Sbjct: 2   MSNTNT-FMLVARR-VLTNIQSRTLRCPCFCSQSSSS----SPSALNNKLFVAGLSWSMD 61

Query: 61  ERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAKDAMDGKALLGRPLR 120
           ERSLKDAFSSFGEV EVRIVYDKDSGRSRGFGFVNFTN+DDAQCAKDAMDGKALLGRPLR
Sbjct: 62  ERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGKALLGRPLR 121

Query: 121 ISFALDKVRGGPVVVPRLSHIDNNV 146
           ISFALDKVRGGPVVVPRLS++ N V
Sbjct: 122 ISFALDKVRGGPVVVPRLSNVGNVV 140

[Close]

BLAST of Sed0009623 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.4e-19
Identity = 40/86 (46.51%), Postives = 67/86 (77.91%), Query Frame = 0


Query: 46  TNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCA 105
           +++KLF+ G+++SMDE SL++AF+ +GEV + R++ D+++GRSRGFGFV FT+ + A  A
Sbjct: 38  SSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSA 97

Query: 106 KDAMDGKALLGRPLRISFALDKVRGG 132
             A+DG+ L GR +++++A D+  GG
Sbjct: 98  IQALDGRDLHGRVVKVNYANDRTSGG 123

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BLAST of Sed0009623 vs. ExPASy Swiss-Prot
Match: Q9LIS2 (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG4 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.3e-18
Identity = 43/81 (53.09%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 47  NNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAK 106
           ++KLFV GLSW  D+ SLK AF+SFGEV E  ++ D+++GRSRGFGFV+F+ +D A  A 
Sbjct: 34  SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93

Query: 107 DAMDGKALLGRPLRISFALDK 128
             MDGK L GR +R++ A ++
Sbjct: 94  KEMDGKELNGRQIRVNLATER 114

[Close]

BLAST of Sed0009623 vs. ExPASy Swiss-Prot
Match: Q9SVM8 (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG2 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 8.5e-18
Identity = 40/81 (49.38%), Postives = 59/81 (72.84%), Query Frame = 0


Query: 47  NNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAK 106
           + KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFVNF ++  A  A 
Sbjct: 34  STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93

Query: 107 DAMDGKALLGRPLRISFALDK 128
             MDGK L GR +R++ A D+
Sbjct: 94  SEMDGKELNGRHIRVNPANDR 114

[Close]

BLAST of Sed0009623 vs. ExPASy Swiss-Prot
Match: W8E7I1 (RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 SV=2)

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-16
Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 0


Query: 44  SPTNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQ 103
           S    KLFV GL+++ DER+L+D FSSFG ++EV +V D+++ RSRGFGF+ FTN + A 
Sbjct: 2   SSEEGKLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61

Query: 104 CAKDAMDGKALLGRPLRISFALDKVRG 131
            A  AM+G++L GR +R+  A    RG
Sbjct: 62  NAMRAMNGESLDGRQIRVDHAGKSARG 88

[Close]

BLAST of Sed0009623 vs. ExPASy Swiss-Prot
Match: P98179 (RNA-binding protein 3 OS=Homo sapiens OX=9606 GN=RBM3 PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.1e-16
Identity = 42/87 (48.28%), Postives = 61/87 (70.11%), Query Frame = 0


Query: 44  SPTNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQ 103
           S    KLFV GL+++ DE++L+D FSSFG ++EV +V D+++ RSRGFGF+ FTN + A 
Sbjct: 2   SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61

Query: 104 CAKDAMDGKALLGRPLRISFALDKVRG 131
            A  AM+G++L GR +R+  A    RG
Sbjct: 62  VAMRAMNGESLDGRQIRVDHAGKSARG 88

[Close]

BLAST of Sed0009623 vs. ExPASy TrEMBL
Match: A0A6J1J7F1 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111484146 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 9.0e-55
Identity = 119/146 (81.51%), Postives = 128/146 (87.67%), Query Frame = 0


Query: 1   MNRTNTLMMLIARRAVVTNFQNPTPSFRCFCSESS---SSAPLPSPSPTNNKLFVAGLSW 60
           M+  N L ML+ARRA +TN Q P  SFRCFCS+SS   SSAP  SPS  NNKLFVAGLSW
Sbjct: 2   MSNANAL-MLLARRA-LTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSW 61

Query: 61  SMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAKDAMDGKALLGR 120
           S+DERSLKDAFSSFGEV EVRI+YDKDSGRSRGFGFVNFTN+DDAQ AKDAMDGKALLGR
Sbjct: 62  SLDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGR 121

Query: 121 PLRISFALDKVRGGPVVVPRLSHIDN 144
           PLRISFALDKVRGGPVVVPRLS+I+N
Sbjct: 122 PLRISFALDKVRGGPVVVPRLSNINN 145

[Close]

BLAST of Sed0009623 vs. ExPASy TrEMBL
Match: A0A6J1FYH8 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111448693 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 5.8e-54
Identity = 117/145 (80.69%), Postives = 127/145 (87.59%), Query Frame = 0


Query: 1   MNRTNTLMMLIARRAVVTNFQNPTPSFRCFCSESS---SSAPLPSPSPTNNKLFVAGLSW 60
           M+  N L ML+ARRA +TN Q P  SFRCFCS+SS   SSAP  SPS  NNKLFVAGLSW
Sbjct: 2   MSNANAL-MLLARRA-LTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSW 61

Query: 61  SMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAKDAMDGKALLGR 120
           S+DERSLKDAFSSFGEV EVRI+YDKDSGRSRGFGFVNFTN+DDAQ AKDAMDGKALLGR
Sbjct: 62  SLDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGR 121

Query: 121 PLRISFALDKVRGGPVVVPRLSHID 143
           PLRISFALDKVRGGPVV+PRLS+I+
Sbjct: 122 PLRISFALDKVRGGPVVIPRLSNIN 144

[Close]

BLAST of Sed0009623 vs. ExPASy TrEMBL
Match: A0A6J1CG90 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111011148 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.3e-53
Identity = 118/145 (81.38%), Postives = 126/145 (86.90%), Query Frame = 0


Query: 1   MNRTNTLMMLIARRAVVTNFQNPTPSFRCFCSESSSSAPLPSPSPTNNKLFVAGLSWSMD 60
           M+ TNT  ML+ARR V+TN Q+ T    CFCS+SSSS    SPS  NNKLFVAGLSWSMD
Sbjct: 2   MSNTNT-FMLVARR-VLTNIQSRTLRCPCFCSQSSSS----SPSALNNKLFVAGLSWSMD 61

Query: 61  ERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAKDAMDGKALLGRPLR 120
           ERSLKDAFSSFGEV EVRIVYDKDSGRSRGFGFVNFTN+DDAQCAKDAMDGKALLGRPLR
Sbjct: 62  ERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGKALLGRPLR 121

Query: 121 ISFALDKVRGGPVVVPRLSHIDNNV 146
           ISFALDKVRGGPVVVPRLS++ N V
Sbjct: 122 ISFALDKVRGGPVVVPRLSNVGNVV 140

[Close]

BLAST of Sed0009623 vs. ExPASy TrEMBL
Match: A0A0A0LQB7 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G416100 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 3.8e-53
Identity = 118/156 (75.64%), Postives = 130/156 (83.33%), Query Frame = 0


Query: 1   MNRTNTLMMLIARRAVVTNFQNPTPSFRCFCSESSSSAPLPSPSPTNNKLFVAGLSWSMD 60
           M+ TNT  +L+AR+A +TN Q P   FRCFCS+S+S  PL S    NNKLFVAGLSWSMD
Sbjct: 1   MSNTNT-FLLLARKA-LTNIQTPFLGFRCFCSQSTS--PLSSSPSPNNKLFVAGLSWSMD 60

Query: 61  ERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAKDAMDGKALLGRPLR 120
           ERSLKDAFSSFGEV EVRIVYDKDSGRSRGFGFVNF N +DAQCAKDAMDGKA+LGRPLR
Sbjct: 61  ERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLR 120

Query: 121 ISFALDKVRGGPVVVPRLSHIDNNVNTGQVGNQHYE 157
           ISFALDKVRG PVVVPRLS+I+N V   + GNQ YE
Sbjct: 121 ISFALDKVRGEPVVVPRLSNINNLVGR-RYGNQQYE 151

[Close]

BLAST of Sed0009623 vs. ExPASy TrEMBL
Match: A0A1S3C2R4 (glycine-rich RNA-binding protein 3, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103495992 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 3.5e-51
Identity = 111/145 (76.55%), Postives = 128/145 (88.28%), Query Frame = 0


Query: 1   MNRTNTLMMLIARRAVVTNFQNPTPSFRCFCSESSSSAPLPSPSPTNNKLFVAGLSWSMD 60
           M+ TNTL +L+AR+A +TN Q P  +FRCFCS+ S+SA   SPS  +NKLFVAGLSWSMD
Sbjct: 19  MSNTNTL-LLLARKA-LTNIQTPILTFRCFCSQ-STSALSSSPSAPSNKLFVAGLSWSMD 78

Query: 61  ERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAKDAMDGKALLGRPLR 120
           ERSLKDAFSSFGEV EVRIVYDKDSGRSRGFGFV+F N++DAQCAKDAMDGKA+LGRPL+
Sbjct: 79  ERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLK 138

Query: 121 ISFALDKVRGGPVVVPRLSHIDNNV 146
           ISFAL+KVRGGPV VPRLS+I+N V
Sbjct: 139 ISFALEKVRGGPVAVPRLSNINNLV 160

[Close]

BLAST of Sed0009623 vs. TAIR 10
Match: AT3G08000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 156.0 bits (393), Expect = 2.6e-38
Identity = 79/109 (72.48%), Postives = 90/109 (82.57%), Query Frame = 0


Query: 30  FCSESSSSAPLPSPSPTNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSR 89
           FC+ SS+S         ++KLF+ GLSWS+DE+SLKDAFSSFGEVAEVRI YDK SGRSR
Sbjct: 31  FCTSSSAS--------PSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSR 90

Query: 90  GFGFVNFTNDDDAQCAKDAMDGKALLGRPLRISFALDKVRGGPVVVPRL 139
           GFGFV+F  + DA  AKDAMDGK LLGRPLRISFAL++VRGGPVVVPRL
Sbjct: 91  GFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFALERVRGGPVVVPRL 131

[Close]

BLAST of Sed0009623 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 96.3 bits (238), Expect = 2.4e-20
Identity = 40/86 (46.51%), Postives = 67/86 (77.91%), Query Frame = 0


Query: 46  TNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCA 105
           +++KLF+ G+++SMDE SL++AF+ +GEV + R++ D+++GRSRGFGFV FT+ + A  A
Sbjct: 38  SSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSA 97

Query: 106 KDAMDGKALLGRPLRISFALDKVRGG 132
             A+DG+ L GR +++++A D+  GG
Sbjct: 98  IQALDGRDLHGRVVKVNYANDRTSGG 123

[Close]

BLAST of Sed0009623 vs. TAIR 10
Match: AT4G13850.4 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 95.1 bits (235), Expect = 5.4e-20
Identity = 42/85 (49.41%), Postives = 61/85 (71.76%), Query Frame = 0


Query: 47  NNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAK 106
           + KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFVNF ++  A  A 
Sbjct: 34  STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93

Query: 107 DAMDGKALLGRPLRISFALDKVRGG 132
             MDGK L GR +R++ A D+  GG
Sbjct: 94  SEMDGKELNGRHIRVNPANDRPSGG 118

[Close]

BLAST of Sed0009623 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 94.4 bits (233), Expect = 9.3e-20
Identity = 43/81 (53.09%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 47  NNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAK 106
           ++KLFV GLSW  D+ SLK AF+SFGEV E  ++ D+++GRSRGFGFV+F+ +D A  A 
Sbjct: 34  SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93

Query: 107 DAMDGKALLGRPLRISFALDK 128
             MDGK L GR +R++ A ++
Sbjct: 94  KEMDGKELNGRQIRVNLATER 114

[Close]

BLAST of Sed0009623 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 94.4 bits (233), Expect = 9.3e-20
Identity = 43/81 (53.09%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 47  NNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAK 106
           ++KLFV GLSW  D+ SLK AF+SFGEV E  ++ D+++GRSRGFGFV+F+ +D A  A 
Sbjct: 34  SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93

Query: 107 DAMDGKALLGRPLRISFALDK 128
             MDGK L GR +R++ A ++
Sbjct: 94  KEMDGKELNGRQIRVNLATER 114

The following BLAST results are available for this feature:

BLAST of Sed0009623 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022986397.1	1.9e-54	81.51	glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima]	[more]
XP_023512965.1	1.9e-54	80.14	glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita pepo subsp. pe...	[more]
KAG6570903.1	5.4e-54	81.38	Glycine-rich RNA-binding protein 4, mitochondrial, partial [Cucurbita argyrosper...	[more]
XP_022944150.1	1.2e-53	80.69	glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita moschata]	[more]
XP_022140496.1	2.7e-53	81.38	glycine-rich RNA-binding protein 4, mitochondrial-like [Momordica charantia]	[more]

BLAST of Sed0009623 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNR1	3.4e-19	46.51	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9LIS2	1.3e-18	53.09	Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9SVM8	8.5e-18	49.38	Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
W8E7I1	1.2e-16	49.43	RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 SV=2	[more]
P98179	2.1e-16	48.28	RNA-binding protein 3 OS=Homo sapiens OX=9606 GN=RBM3 PE=1 SV=1	[more]

BLAST of Sed0009623 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J7F1	9.0e-55	81.51	glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita maxima OX=36...	[more]
A0A6J1FYH8	5.8e-54	80.69	glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita moschata OX=...	[more]
A0A6J1CG90	1.3e-53	81.38	glycine-rich RNA-binding protein 4, mitochondrial-like OS=Momordica charantia OX...	[more]
A0A0A0LQB7	3.8e-53	75.64	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G416100 PE=4 SV...	[more]
A0A1S3C2R4	3.5e-51	76.55	glycine-rich RNA-binding protein 3, mitochondrial OS=Cucumis melo OX=3656 GN=LOC...	[more]

BLAST of Sed0009623 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G08000.1	2.6e-38	72.48	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G61030.1	2.4e-20	46.51	glycine-rich RNA-binding protein 3	[more]
AT4G13850.4	5.4e-20	49.41	glycine-rich RNA-binding protein 2	[more]
AT3G23830.1	9.3e-20	53.09	glycine-rich RNA-binding protein 4	[more]
AT3G23830.2	9.3e-20	53.09	glycine-rich RNA-binding protein 4	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 49..122 e-value: 2.0E-26 score: 103.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 50..120 e-value: 4.2E-21 score: 74.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 48..126 score: 20.729872
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 28..129 e-value: 4.2E-32 score: 113.3
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 7..143
None	No IPR available	PANTHER	PTHR15241:SF334	GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL	coord: 7..143
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 34..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0009623.1	Sed0009623.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding