Sed0009483 (gene) Chayote v1

Overview


Name	Sed0009483
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein SLOW GREEN 1, chloroplastic-like
Location	LG02: 44875604 .. 44876348 (+)
RNA-Seq Expression	Sed0009483
Synteny	Sed0009483

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCTCTAGTTACACTGCAACATTGCTGTCGTTCCCTTCACCTTCCCGTCCATCGCTTCCCCATAGCACCGACGCCGTTTAGATCTCGACTGCGCATAGCATCGGTGCCGTTCAAATCATCATCATCCATAAGATTCTATGTCGCATCTCCGCCATCATCCTCCAACTCATTCCACAAAATTCTTGACCCTATTTTCGCATCAATCCTCAAGACGACCTGCTTCACTTTGACTGCCACTGCCGCTCTGTTTTTAATGCACTTTTCCGGCAGAGCTGCAACCAAATCCGCCGAACATCGTGGAGTTTGATAAGGAATGGATGGACAGTCAAGAAGATGAGGCGAGGAAACTAGACGAACAACAGGCGAACAATCCCAACGATGTTAACATTCTTGTAGCGTTCATGAAGGTAAGATTTCACGCTTCCAAGTTGCCTGAAGCTCATACCAATGTCAATCGTTTAATTGAACTCAAGCCCGATGAATTAAAATGGCTCATATGGAGGGGCTTTCTTTTTAGCAAAATGGGCGATTCTGAATCGGCAAGAAACGATTTCGAGAGGGTTTTAGAGAAGGATCCTTGTCAGTTTAAGGCATATCAAGGGCTTGCATATACAATCAAACCATCAGAAACTTATGCATTGGAAGCCATGCAGAAGAAGATCAAAGGAGTACTCGAAAATTTCAAGGAACATATAGTGAAGAATGATGTAAAGGAGATTCAAGATGATGTTGATATCTGA

mRNA sequence

ATGGATTCTCTAGTTACACTGCAACATTGCTGTCGTTCCCTTCACCTTCCCGTCCATCGCTTCCCCATAGCACCGACGCCGTTTAGATCTCGACTGCGCATAGCATCGCTGCAACCAAATCCGCCGAACATCGTGGAGTTTGATAAGGAATGGATGGACAGTCAAGAAGATGAGGCGAGGAAACTAGACGAACAACAGGCGAACAATCCCAACGATGTTAACATTCTTGTAGCGTTCATGAAGGTAAGATTTCACGCTTCCAAGTTGCCTGAAGCTCATACCAATGTCAATCGTTTAATTGAACTCAAGCCCGATGAATTAAAATGGCTCATATGGAGGGGCTTTCTTTTTAGCAAAATGGGCGATTCTGAATCGGCAAGAAACGATTTCGAGAGGGTTTTAGAGAAGGATCCTTGTCAGTTTAAGGCATATCAAGGGCTTGCATATACAATCAAACCATCAGAAACTTATGCATTGGAAGCCATGCAGAAGAAGATCAAAGGAGTACTCGAAAATTTCAAGGAACATATAGTGAAGAATGATGTAAAGGAGATTCAAGATGATGTTGATATCTGA

Coding sequence (CDS)

ATGGATTCTCTAGTTACACTGCAACATTGCTGTCGTTCCCTTCACCTTCCCGTCCATCGCTTCCCCATAGCACCGACGCCGTTTAGATCTCGACTGCGCATAGCATCGCTGCAACCAAATCCGCCGAACATCGTGGAGTTTGATAAGGAATGGATGGACAGTCAAGAAGATGAGGCGAGGAAACTAGACGAACAACAGGCGAACAATCCCAACGATGTTAACATTCTTGTAGCGTTCATGAAGGTAAGATTTCACGCTTCCAAGTTGCCTGAAGCTCATACCAATGTCAATCGTTTAATTGAACTCAAGCCCGATGAATTAAAATGGCTCATATGGAGGGGCTTTCTTTTTAGCAAAATGGGCGATTCTGAATCGGCAAGAAACGATTTCGAGAGGGTTTTAGAGAAGGATCCTTGTCAGTTTAAGGCATATCAAGGGCTTGCATATACAATCAAACCATCAGAAACTTATGCATTGGAAGCCATGCAGAAGAAGATCAAAGGAGTACTCGAAAATTTCAAGGAACATATAGTGAAGAATGATGTAAAGGAGATTCAAGATGATGTTGATATCTGA

Protein sequence

MDSLVTLQHCCRSLHLPVHRFPIAPTPFRSRLRIASLQPNPPNIVEFDKEWMDSQEDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLEKDPCQFKAYQGLAYTIKPSETYALEAMQKKIKGVLENFKEHIVKNDVKEIQDDVDI

Homology

[Close]

BLAST of Sed0009483 vs. NCBI nr
Match: KAG7027970.1 (protein SLOW GREEN 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 125.6 bits (314), Expect = 4.7e-25
Identity = 65/148 (43.92%), Postives = 99/148 (66.89%), Query Frame = 0


Query: 39  PNPPNIVEFDKEWMDSQEDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNR 98
           P PP  VE  KE  D +ED+ R L+EQ  +NPNDV  L + M+VR  A K PEA   ++R
Sbjct: 116 PIPPPTVESVKESTDGEEDKERALEEQLVHNPNDVEALGSLMEVRVKARKFPEAIKILDR 175

Query: 99  LIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLEKDPCQFKAYQGLAYTIKPSETYA 158
           LIEL+PD+L+WL+ +  ++  +GDSE AR +FER+L KDP Q +AY GL    + S+T +
Sbjct: 176 LIELEPDDLEWLVLKANVYIHIGDSELARKEFERILLKDPFQAEAYHGLVMLTETSDTDS 235

Query: 159 LEAMQKKIKGVLENFKEHIVKNDVKEIQ 187
           L+A+  +++G LE+ K+   K++ ++ +
Sbjct: 236 LKAILNRVEGALEHCKKLKGKSEERDFK 263

[Close]

BLAST of Sed0009483 vs. NCBI nr
Match: KAG6596428.1 (protein SLOW GREEN 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125.6 bits (314), Expect = 4.7e-25
Identity = 65/148 (43.92%), Postives = 99/148 (66.89%), Query Frame = 0


Query: 39  PNPPNIVEFDKEWMDSQEDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNR 98
           P PP  VE  KE  D +ED+ R L+EQ  +NPNDV  L + M+VR  A K PEA   ++R
Sbjct: 170 PIPPPTVESVKESTDGEEDKERALEEQLVHNPNDVEALGSLMEVRVKARKFPEAIKILDR 229

Query: 99  LIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLEKDPCQFKAYQGLAYTIKPSETYA 158
           LIEL+PD+L+WL+ +  ++  +GDSE AR +FER+L KDP Q +AY GL    + S+T +
Sbjct: 230 LIELEPDDLEWLVLKANVYIHIGDSELARKEFERILLKDPFQAEAYHGLVMLTETSDTDS 289

Query: 159 LEAMQKKIKGVLENFKEHIVKNDVKEIQ 187
           L+A+  +++G LE+ K+   K++ ++ +
Sbjct: 290 LKAILNRVEGALEHCKKLKGKSEERDFK 317

[Close]

BLAST of Sed0009483 vs. NCBI nr
Match: XP_022951549.1 (protein SLOW GREEN 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 125.6 bits (314), Expect = 4.7e-25
Identity = 65/148 (43.92%), Postives = 99/148 (66.89%), Query Frame = 0


Query: 39  PNPPNIVEFDKEWMDSQEDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNR 98
           P PP  VE  KE  D +ED+ R L+EQ  +NPNDV  L + M+VR  A K PEA   ++R
Sbjct: 116 PIPPPTVESVKESTDGEEDKERALEEQLVHNPNDVEALGSLMEVRVKARKFPEAIKILDR 175

Query: 99  LIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLEKDPCQFKAYQGLAYTIKPSETYA 158
           LIEL+PD+L+WL+ +  ++  +GDSE AR +FER+L KDP Q +AY GL    + S+T +
Sbjct: 176 LIELEPDDLEWLVLKANVYIHIGDSELARKEFERILLKDPFQAEAYHGLVMLTETSDTDS 235

Query: 159 LEAMQKKIKGVLENFKEHIVKNDVKEIQ 187
           L+A+  +++G LE+ K+   K++ ++ +
Sbjct: 236 LKAILNRVEGALEHCKKLKGKSEERDFK 263

[Close]

BLAST of Sed0009483 vs. NCBI nr
Match: XP_022145509.1 (protein SLOW GREEN 1, chloroplastic-like [Momordica charantia])

HSP 1 Score: 125.2 bits (313), Expect = 6.2e-25
Identity = 65/151 (43.05%), Postives = 99/151 (65.56%), Query Frame = 0


Query: 39  PNPPNIVEFDKEWMDSQ---EDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTN 98
           P PP  VE  KE  D +   E++ R L+EQ  NNPND+  L + M+VR  A K PEA   
Sbjct: 118 PIPPPTVESVKEPTDGEAFREEKERVLEEQLVNNPNDIEALRSLMEVRLRARKFPEAVNI 177

Query: 99  VNRLIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLEKDPCQFKAYQGLAYTIKPSE 158
           ++RLIEL+PD+L+WL+ +  ++S +G+SE AR +FER+L KDP Q +AY GL    +PS+
Sbjct: 178 LDRLIELEPDDLEWLVLKANVYSHVGNSELARKEFERILAKDPFQVEAYHGLVMLTEPSD 237

Query: 159 TYALEAMQKKIKGVLENFKEHIVKNDVKEIQ 187
           T +L  +  +I+  L N K+H  K++ ++++
Sbjct: 238 TSSLREILGRIEEALGNCKKHKAKSEERDLK 268

[Close]

BLAST of Sed0009483 vs. NCBI nr
Match: XP_023005898.1 (protein SLOW GREEN 1, chloroplastic-like [Cucurbita maxima] >XP_023005899.1 protein SLOW GREEN 1, chloroplastic-like [Cucurbita maxima] >XP_023005900.1 protein SLOW GREEN 1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 124.4 bits (311), Expect = 1.1e-24
Identity = 64/148 (43.24%), Postives = 99/148 (66.89%), Query Frame = 0


Query: 39  PNPPNIVEFDKEWMDSQEDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNR 98
           P PP  VE  KE  D +ED+ R L+EQ  +NPNDV  L + M+VR  + K PEA   ++R
Sbjct: 116 PIPPPTVESVKESTDGEEDKERALEEQLVHNPNDVEALGSLMEVRVKSRKFPEAIKILDR 175

Query: 99  LIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLEKDPCQFKAYQGLAYTIKPSETYA 158
           LIEL+PD+L+WL+ +  ++  +GDSE AR +FER+L KDP Q +AY GL    + S+T +
Sbjct: 176 LIELEPDDLEWLVLKANVYIHIGDSELARKEFERILLKDPFQAEAYHGLVMLTETSDTDS 235

Query: 159 LEAMQKKIKGVLENFKEHIVKNDVKEIQ 187
           L+A+  +++G LE+ K+   K++ ++ +
Sbjct: 236 LKAILNRVEGALEHCKKLKGKSEERDFK 263

[Close]

BLAST of Sed0009483 vs. ExPASy Swiss-Prot
Match: Q9LS48 (protein SLOW GREEN 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SG1 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.6e-04
Identity = 26/95 (27.37%), Postives = 47/95 (49.47%), Query Frame = 0


Query: 49  KEWMDSQEDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELK 108
           +E  + +  E   L E   + P  V  L + ++ +    +  EA   + RL+  +P+E +
Sbjct: 94  EEVKEEKLSEITPLSELLDSTPEAVETLRSLLQQKLEKGEDEEALKLLERLVAAQPEETE 153

Query: 109 WLIWRGFLFSKMGDSESARNDFERVLEKDPCQFKA 144
           W      L  +MG  E+AR  FE +L+++P  F+A
Sbjct: 154 WKFLMARLLGEMGRPENARQMFEEILQRNPLSFEA 188

[Close]

BLAST of Sed0009483 vs. ExPASy TrEMBL
Match: A0A6J1GJ39 (protein SLOW GREEN 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111454326 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.3e-25
Identity = 65/148 (43.92%), Postives = 99/148 (66.89%), Query Frame = 0


Query: 39  PNPPNIVEFDKEWMDSQEDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNR 98
           P PP  VE  KE  D +ED+ R L+EQ  +NPNDV  L + M+VR  A K PEA   ++R
Sbjct: 116 PIPPPTVESVKESTDGEEDKERALEEQLVHNPNDVEALGSLMEVRVKARKFPEAIKILDR 175

Query: 99  LIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLEKDPCQFKAYQGLAYTIKPSETYA 158
           LIEL+PD+L+WL+ +  ++  +GDSE AR +FER+L KDP Q +AY GL    + S+T +
Sbjct: 176 LIELEPDDLEWLVLKANVYIHIGDSELARKEFERILLKDPFQAEAYHGLVMLTETSDTDS 235

Query: 159 LEAMQKKIKGVLENFKEHIVKNDVKEIQ 187
           L+A+  +++G LE+ K+   K++ ++ +
Sbjct: 236 LKAILNRVEGALEHCKKLKGKSEERDFK 263

[Close]

BLAST of Sed0009483 vs. ExPASy TrEMBL
Match: A0A6J1CVG3 (protein SLOW GREEN 1, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111014942 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.0e-25
Identity = 65/151 (43.05%), Postives = 99/151 (65.56%), Query Frame = 0


Query: 39  PNPPNIVEFDKEWMDSQ---EDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTN 98
           P PP  VE  KE  D +   E++ R L+EQ  NNPND+  L + M+VR  A K PEA   
Sbjct: 118 PIPPPTVESVKEPTDGEAFREEKERVLEEQLVNNPNDIEALRSLMEVRLRARKFPEAVNI 177

Query: 99  VNRLIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLEKDPCQFKAYQGLAYTIKPSE 158
           ++RLIEL+PD+L+WL+ +  ++S +G+SE AR +FER+L KDP Q +AY GL    +PS+
Sbjct: 178 LDRLIELEPDDLEWLVLKANVYSHVGNSELARKEFERILAKDPFQVEAYHGLVMLTEPSD 237

Query: 159 TYALEAMQKKIKGVLENFKEHIVKNDVKEIQ 187
           T +L  +  +I+  L N K+H  K++ ++++
Sbjct: 238 TSSLREILGRIEEALGNCKKHKAKSEERDLK 268

[Close]

BLAST of Sed0009483 vs. ExPASy TrEMBL
Match: A0A6J1L0L6 (protein SLOW GREEN 1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111498766 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 5.1e-25
Identity = 64/148 (43.24%), Postives = 99/148 (66.89%), Query Frame = 0


Query: 39  PNPPNIVEFDKEWMDSQEDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNR 98
           P PP  VE  KE  D +ED+ R L+EQ  +NPNDV  L + M+VR  + K PEA   ++R
Sbjct: 116 PIPPPTVESVKESTDGEEDKERALEEQLVHNPNDVEALGSLMEVRVKSRKFPEAIKILDR 175

Query: 99  LIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLEKDPCQFKAYQGLAYTIKPSETYA 158
           LIEL+PD+L+WL+ +  ++  +GDSE AR +FER+L KDP Q +AY GL    + S+T +
Sbjct: 176 LIELEPDDLEWLVLKANVYIHIGDSELARKEFERILLKDPFQAEAYHGLVMLTETSDTDS 235

Query: 159 LEAMQKKIKGVLENFKEHIVKNDVKEIQ 187
           L+A+  +++G LE+ K+   K++ ++ +
Sbjct: 236 LKAILNRVEGALEHCKKLKGKSEERDFK 263

[Close]

BLAST of Sed0009483 vs. ExPASy TrEMBL
Match: A0A5D3DP70 (Protein SLOW GREEN 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001920 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 6.0e-18
Identity = 57/154 (37.01%), Postives = 97/154 (62.99%), Query Frame = 0


Query: 39  PNPPNIVEFDKEWMDSQEDEARK------LDEQQANNPNDVNILVAFMKVRFHASKLPEA 98
           P PP  VE  +E   S +DEA +      L+E+  NN NDV  L + ++V   A K PEA
Sbjct: 104 PIPPPTVESVEE---STKDEASRGEKETVLEEELVNNSNDVEALQSLIEVNVKARKFPEA 163

Query: 99  HTNVNRLIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLEKDPCQFKAYQGLAYTIK 158
              ++RLI+L+P++L+WL+ +  + S +GDSE AR +F+++LEKDP Q +AY GL    +
Sbjct: 164 IKILDRLIKLEPNDLEWLVLKANVHSHVGDSELARKEFQKILEKDPFQVEAYHGLVMLTE 223

Query: 159 PSETYALEAMQKKIKGVLENFKEHIVKNDVKEIQ 187
            S+  +L+A+  +++  LE+ K++  K++ ++ +
Sbjct: 224 TSDIDSLKAILIRVEEALEHCKKYKGKSEERDFK 254

[Close]

BLAST of Sed0009483 vs. ExPASy TrEMBL
Match: A0A1S3B6T4 (protein SLOW GREEN 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486414 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 6.0e-18
Identity = 57/154 (37.01%), Postives = 97/154 (62.99%), Query Frame = 0


Query: 39  PNPPNIVEFDKEWMDSQEDEARK------LDEQQANNPNDVNILVAFMKVRFHASKLPEA 98
           P PP  VE  +E   S +DEA +      L+E+  NN NDV  L + ++V   A K PEA
Sbjct: 104 PIPPPTVESVEE---STKDEASRGEKETVLEEELVNNSNDVEALQSLIEVNVKARKFPEA 163

Query: 99  HTNVNRLIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLEKDPCQFKAYQGLAYTIK 158
              ++RLI+L+P++L+WL+ +  + S +GDSE AR +F+++LEKDP Q +AY GL    +
Sbjct: 164 IKILDRLIKLEPNDLEWLVLKANVHSHVGDSELARKEFQKILEKDPFQVEAYHGLVMLTE 223

Query: 159 PSETYALEAMQKKIKGVLENFKEHIVKNDVKEIQ 187
            S+  +L+A+  +++  LE+ K++  K++ ++ +
Sbjct: 224 TSDIDSLKAILIRVEEALEHCKKYKGKSEERDFK 254

[Close]

BLAST of Sed0009483 vs. TAIR 10
Match: AT2G37400.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 91.3 bits (225), Expect = 9.2e-19
Identity = 58/170 (34.12%), Postives = 94/170 (55.29%), Query Frame = 0


Query: 17  PVHRFPIAPTPFRSRLRIASLQPNPPNIVEFDKEWMDSQEDEARKLDEQQANNPNDVNIL 76
           P    P+A TP      + SL+ +  N+         S E+E R L+E  A++P+DV  L
Sbjct: 88  PAIAAPVAATPL-----MESLKQSNGNV---------SFEEEERSLEEYLASHPDDVEAL 147

Query: 77  VAFMKVRFHASKLPEAHTNVNRLIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLEK 136
            + M+VR  + KL EA   ++RLIEL+P+E +W + +  +FS  GD ESA+  FE +L K
Sbjct: 148 RSLMEVRIKSRKLLEAIELIDRLIELEPEEKEWPMLKANIFSYSGDLESAKTGFEEILVK 207

Query: 137 DPCQFKAYQGLAYTIKPSETYALEAMQKKIKGVLENFKEHIVKNDVKEIQ 187
           DP + +AY GL      S    L A++K+I+  +   K+   + D+++ +
Sbjct: 208 DPLRVEAYHGLVMAYSDSGD-DLNAVEKRIEEAMVRCKKEKNRKDLRDFK 242

[Close]

BLAST of Sed0009483 vs. TAIR 10
Match: AT5G02590.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 83.6 bits (205), Expect = 1.9e-16
Identity = 50/157 (31.85%), Postives = 81/157 (51.59%), Query Frame = 0


Query: 34  IASLQPNPPNIVEFDKEWMDS---QEDEARKLDEQQANNPNDVNILVAFMKVRFHASKLP 93
           + S  P P    +   + + S   +E+E   L++    NPNDV  L + MK++F    + 
Sbjct: 87  LVSPPPPPSTAADLTSDQISSRPKEEEEEAALEKHLTKNPNDVEALQSLMKIKFQTKNID 146

Query: 94  EAHTNVNRLIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLEKDPCQFKAYQGLAYT 153
            A   +NRLIE++P+E +W I +  + +  GD +SA   FE VL KDP + +AY GL   
Sbjct: 147 HALEILNRLIEIQPEEQEWRILKAQVQTYGGDFDSATKGFEEVLSKDPFRVEAYHGLVMA 206

Query: 154 IKPSETYALEAMQKKIKGVLENFKEHIVKNDVKEIQD 188
              SE+  L  ++ +I   +E  K    K + K+ +D
Sbjct: 207 YSESES-KLSEIESRINEAIEKCK----KENKKDFRD 238

[Close]

BLAST of Sed0009483 vs. TAIR 10
Match: AT3G53560.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 79.3 bits (194), Expect = 3.6e-15
Identity = 48/146 (32.88%), Postives = 85/146 (58.22%), Query Frame = 0


Query: 41  PPNIVEFDKEWMDSQEDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLI 100
           PP  VE  KE +  +E+E R LDE    +P+DV+ L + M+V+  + KL EA   ++RLI
Sbjct: 100 PPPSVE-SKENVTLEEEE-RALDEHLITHPSDVDALRSLMEVKIKSRKLTEAVEVIDRLI 159

Query: 101 ELKPDELKWLIWRGFLFSKMGDSESARNDFERVLEKDPCQFKAYQGLAYTIKPSETYALE 160
           +L+P+E +W + +  +F+  GD + A+  FE +L KDP + +AY GL      +    L+
Sbjct: 160 KLEPEEKEWPVLKANIFTYSGDLDLAKTGFEEILAKDPLRVEAYHGLLMAYSDA-GLDLK 219

Query: 161 AMQKKIKGVLENFKEHIVKNDVKEIQ 187
            ++ +I+  +   K+   +ND ++ +
Sbjct: 220 EVESRIEEAMLKCKKENNQNDFRDFK 242

[Close]

BLAST of Sed0009483 vs. TAIR 10
Match: AT3G09490.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 67.0 bits (162), Expect = 1.9e-11
Identity = 41/117 (35.04%), Postives = 61/117 (52.14%), Query Frame = 0


Query: 62  LDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELKWLIWRGFLFSKMG 121
           L++      NDVN L    +++F + K  +A   ++RLIE++P E KW   +  + S  G
Sbjct: 102 LEKHLETQSNDVNALSLLTEIKFKSDKHEQAIVFLDRLIEIEPYERKWPAMKARILSYHG 161

Query: 122 DSESARNDFERVLEKDPCQFKAYQGLA---YTIKPSETYALEAMQKKIKGVLENFKE 176
            SESA   FE +LEKDP +  AY  L    Y  KP     L  ++K+I  V+   K+
Sbjct: 162 KSESAIEAFEEILEKDPIRVDAYHYLVMEYYNSKPK----LTEIEKRINKVIRRCKK 214

[Close]

BLAST of Sed0009483 vs. TAIR 10
Match: AT3G18420.1 (Protein prenylyltransferase superfamily protein )

HSP 1 Score: 47.8 bits (112), Expect = 1.2e-05
Identity = 26/95 (27.37%), Postives = 47/95 (49.47%), Query Frame = 0


Query: 49  KEWMDSQEDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELK 108
           +E  + +  E   L E   + P  V  L + ++ +    +  EA   + RL+  +P+E +
Sbjct: 94  EEVKEEKLSEITPLSELLDSTPEAVETLRSLLQQKLEKGEDEEALKLLERLVAAQPEETE 153

Query: 109 WLIWRGFLFSKMGDSESARNDFERVLEKDPCQFKA 144
           W      L  +MG  E+AR  FE +L+++P  F+A
Sbjct: 154 WKFLMARLLGEMGRPENARQMFEEILQRNPLSFEA 188

The following BLAST results are available for this feature:

BLAST of Sed0009483 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027970.1	4.7e-25	43.92	protein SLOW GREEN 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argy...	[more]
KAG6596428.1	4.7e-25	43.92	protein SLOW GREEN 1, chloroplastic, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_022951549.1	4.7e-25	43.92	protein SLOW GREEN 1, chloroplastic-like [Cucurbita moschata]	[more]
XP_022145509.1	6.2e-25	43.05	protein SLOW GREEN 1, chloroplastic-like [Momordica charantia]	[more]
XP_023005898.1	1.1e-24	43.24	protein SLOW GREEN 1, chloroplastic-like [Cucurbita maxima] >XP_023005899.1 prot...	[more]

BLAST of Sed0009483 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LS48	1.6e-04	27.37	protein SLOW GREEN 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SG1 PE=1 ...	[more]

BLAST of Sed0009483 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GJ39	2.3e-25	43.92	protein SLOW GREEN 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1CVG3	3.0e-25	43.05	protein SLOW GREEN 1, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1L0L6	5.1e-25	43.24	protein SLOW GREEN 1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A5D3DP70	6.0e-18	37.01	Protein SLOW GREEN 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352...	[more]
A0A1S3B6T4	6.0e-18	37.01	protein SLOW GREEN 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486414 PE=4...	[more]

BLAST of Sed0009483 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37400.1	9.2e-19	34.12	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G02590.1	1.9e-16	31.85	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G53560.1	3.6e-15	32.88	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G09490.1	1.9e-11	35.04	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G18420.1	1.2e-05	27.37	Protein prenylyltransferase superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 59..187 e-value: 1.2E-11 score: 46.5
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 62..150
None	No IPR available	PANTHER	PTHR26312:SF162	BNAA03G17190D PROTEIN	coord: 46..163
None	No IPR available	PANTHER	PTHR26312	TETRATRICOPEPTIDE REPEAT PROTEIN 5	coord: 46..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0009483.1	Sed0009483.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding