Sed0009459 (gene) Chayote v1

Overview


Name	Sed0009459
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Histone H2B
Location	LG03: 12416891 .. 12417787 (+)
RNA-Seq Expression	Sed0009459
Synteny	Sed0009459

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATACCTACACTTTAGAACGTTTCTCTGTGAGATCCCCAAATTCCTTGAGATCTCAACAATGGCGCCGAAGGCCGAGAAGAAGCCGGCGGAGAAGAAACCGGCGGAGGAGAAGAAGGCGGAGAAAGCTCCGGCGGAGAAGAAGCCGCGAGCGGAGAAGAAGCTTCCGAAAGACGGCGGCGACAAGAAGAAGAAGAGGACGAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTTCATCCAGACATCGGAATCTCGAGCAAGGCCATGGGGATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTTGCTCAGGAATCCTCCAAGCTCGCCCGCTACAACAAGAAGCCAACCATCACCTCCAGGGAGATCCAAACCGCCGTTCGCCTCGTTCTTCCCGGCGAGTTAGCCAAACACGCCGTCTCCGAAGGTACCAAGGCCGTTACCAAGTTTACTAGCTCTTAGATCGCTACAGATGTAGGGTTTCTTGTGTAAAGATCCGTCTGACTATTTCTCAATCGTTGATTTCGCTATATTCTGTTGGTTTAGTTTAGATTCTAATGAATGAAAATCAGGTTGTGTTATGCAATTTCTCTGGTTTCTTGATCGATTTTGGCTGCATTGTGGTTTGTGTATTCTGTTTGATCTCTCGAGATTTGCCCTAATTTCCCTTAGGGTTCTTGTTTTGTTTCATCGTAGCATTGGTCTAAACCCTAATTTGATTCACATTACTTGTAATTACTGATCTTTTAAGCAGATTCATGATTGTGAATTATGTGATTTTTAGACTTTGATCTTCTGTTCTTGTGCTAGCAAAATTGGATATCTGATTCCTTTTTGGTATAAATCCCTTTCCAAAACAATGCCTATCTTTCTG

mRNA sequence

AATACCTACACTTTAGAACGTTTCTCTGTGAGATCCCCAAATTCCTTGAGATCTCAACAATGGCGCCGAAGGCCGAGAAGAAGCCGGCGGAGAAGAAACCGGCGGAGGAGAAGAAGGCGGAGAAAGCTCCGGCGGAGAAGAAGCCGCGAGCGGAGAAGAAGCTTCCGAAAGACGGCGGCGACAAGAAGAAGAAGAGGACGAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTTCATCCAGACATCGGAATCTCGAGCAAGGCCATGGGGATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTTGCTCAGGAATCCTCCAAGCTCGCCCGCTACAACAAGAAGCCAACCATCACCTCCAGGGAGATCCAAACCGCCGTTCGCCTCGTTCTTCCCGGCGAGTTAGCCAAACACGCCGTCTCCGAAGGTACCAAGGCCGTTACCAAGTTTACTAGCTCTTAGATCGCTACAGATGTAGGGTTTCTTGTGTAAAGATCCGTCTGACTATTTCTCAATCGTTGATTTCGCTATATTCTGTTGGTTTAGTTTAGATTCTAATGAATGAAAATCAGGTTGTGTTATGCAATTTCTCTGGTTTCTTGATCGATTTTGGCTGCATTGTGGTTTGTGTATTCTGTTTGATCTCTCGAGATTTGCCCTAATTTCCCTTAGGGTTCTTGTTTTGTTTCATCGTAGCATTGGTCTAAACCCTAATTTGATTCACATTACTTGTAATTACTGATCTTTTAAGCAGATTCATGATTGTGAATTATGTGATTTTTAGACTTTGATCTTCTGTTCTTGTGCTAGCAAAATTGGATATCTGATTCCTTTTTGGTATAAATCCCTTTCCAAAACAATGCCTATCTTTCTG

Coding sequence (CDS)

ATGGCGCCGAAGGCCGAGAAGAAGCCGGCGGAGAAGAAACCGGCGGAGGAGAAGAAGGCGGAGAAAGCTCCGGCGGAGAAGAAGCCGCGAGCGGAGAAGAAGCTTCCGAAAGACGGCGGCGACAAGAAGAAGAAGAGGACGAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTTCATCCAGACATCGGAATCTCGAGCAAGGCCATGGGGATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTTGCTCAGGAATCCTCCAAGCTCGCCCGCTACAACAAGAAGCCAACCATCACCTCCAGGGAGATCCAAACCGCCGTTCGCCTCGTTCTTCCCGGCGAGTTAGCCAAACACGCCGTCTCCGAAGGTACCAAGGCCGTTACCAAGTTTACTAGCTCTTAG

Protein sequence

MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

Homology

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BLAST of Sed0009459 vs. NCBI nr
Match: XP_022937557.1 (histone H2B-like [Cucurbita moschata] >XP_022937558.1 histone H2B-like [Cucurbita moschata] >XP_022969534.1 histone H2B [Cucurbita maxima] >XP_023537508.1 histone H2B [Cucurbita pepo subsp. pepo] >XP_023537509.1 histone H2B [Cucurbita pepo subsp. pepo] >KAG6586018.1 hypothetical protein SDJN03_18751, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020794.1 hypothetical protein SDJN02_17482, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 247.7 bits (631), Expect = 6.1e-62
Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGGDKKKKRTKKSVETYKIYIFK 60
           MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDG DKKKK+ KKSVETYKIYIFK
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGADKKKKKAKKSVETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTSS 142
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 121 GELAKHAVSEGTKAVTKFTSS 141

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BLAST of Sed0009459 vs. NCBI nr
Match: XP_017606405.1 (PREDICTED: histone H2B-like [Gossypium arboreum] >KAB2065488.1 hypothetical protein ES319_A09G092200v1 [Gossypium barbadense] >KAG8483436.1 hypothetical protein CXB51_023177 [Gossypium anomalum] >TYH02098.1 hypothetical protein ES288_A09G111300v1 [Gossypium darwinii] >TYI09951.1 hypothetical protein ES332_A09G106600v1 [Gossypium tomentosum] >TYJ18066.1 hypothetical protein E1A91_A09G096500v1 [Gossypium mustelinum])

HSP 1 Score: 247.7 bits (631), Expect = 6.1e-62
Identity = 137/141 (97.16%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGGDKKKKRTKKSVETYKIYIFK 60
           MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPK+ GDKKKKRTKKS+ETYKIYIFK
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKEAGDKKKKRTKKSIETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTSS 142
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 121 GELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of Sed0009459 vs. NCBI nr
Match: XP_016668873.1 (histone H2B-like [Gossypium hirsutum] >KAG4183114.1 hypothetical protein ERO13_A09G088100v2 [Gossypium hirsutum])

HSP 1 Score: 246.9 bits (629), Expect = 1.0e-61
Identity = 136/141 (96.45%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGGDKKKKRTKKSVETYKIYIFK 60
           MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKK+PK+ GDKKKKRTKKS+ETYKIYIFK
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKIPKEAGDKKKKRTKKSIETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTSS 142
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 121 GELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of Sed0009459 vs. NCBI nr
Match: XP_021674558.1 (histone H2B-like [Hevea brasiliensis] >ADR30786.1 histone H2B1 [Hevea brasiliensis])

HSP 1 Score: 246.5 bits (628), Expect = 1.4e-61
Identity = 140/144 (97.22%), Postives = 141/144 (97.92%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGG---DKKKKRTKKSVETYKIY 60
           MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGG   DKKKKRTKKSVETYKIY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGGSAADKKKKRTKKSVETYKIY 60

Query: 61  IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRL 120
           IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRL
Sbjct: 61  IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 120

Query: 121 VLPGELAKHAVSEGTKAVTKFTSS 142
           VLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VLPGELAKHAVSEGTKAVTKFTSS 144

[Close]

BLAST of Sed0009459 vs. NCBI nr
Match: KAG6586017.1 (hypothetical protein SDJN03_18750, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020793.1 hypothetical protein SDJN02_17481, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 246.5 bits (628), Expect = 1.4e-61
Identity = 137/141 (97.16%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGGDKKKKRTKKSVETYKIYIFK 60
           MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDG DKK+K+ KKSVETYKIYIFK
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGADKKRKKAKKSVETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTSS 142
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 121 GELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of Sed0009459 vs. ExPASy Swiss-Prot
Match: O22582 (Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3)

HSP 1 Score: 232.6 bits (592), Expect = 2.7e-60
Identity = 135/147 (91.84%), Postives = 139/147 (94.56%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKK--AEKAPAEKKPRAEKKLPKDG----GDKKKKRTKKSVETY 60
           MAPKAEKKPAEKKPAEEKK  AEKAPAEKKP+A KKLPK+G    GDKKKKR KKSVETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRVKKSVETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 142
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of Sed0009459 vs. ExPASy Swiss-Prot
Match: Q9LZT0 (Histone H2B.7 OS=Arabidopsis thaliana OX=3702 GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 229.6 bits (584), Expect = 2.3e-59
Identity = 134/145 (92.41%), Postives = 136/145 (93.79%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEK-KAEKAPAEKKPRAEKKLPKD---GGDKKKKRTKKSVETYKI 60
           MAPKAEKKPAEKKP EEK KAEKAPAEKKP+A KKLPK+   GGDKKKK  KKSVETYKI
Sbjct: 1   MAPKAEKKPAEKKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYKI 60

Query: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVR 120
           YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREIQTAVR
Sbjct: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVR 120

Query: 121 LVLPGELAKHAVSEGTKAVTKFTSS 142
           LVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 LVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of Sed0009459 vs. ExPASy Swiss-Prot
Match: P40283 (Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 228.0 bits (580), Expect = 6.6e-59
Identity = 134/150 (89.33%), Postives = 137/150 (91.33%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEK------KAEKAPAEKKPRAEKKLPKD---GGDKKKKRTKKSV 60
           MAPKAEKKPAEKKPA EK      KAEKAPAEKKP+A KKLPK+   GGDKKKK  KKSV
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 120
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 120

Query: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 142
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Sed0009459 vs. ExPASy Swiss-Prot
Match: O65821 (Histone H2B.1 OS=Solanum lycopersicum OX=4081 GN=H2B-1 PE=2 SV=4)

HSP 1 Score: 225.7 bits (574), Expect = 3.3e-58
Identity = 128/142 (90.14%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKD-GGDKKKKRTKKSVETYKIYIF 60
           MAPKA KKPAEKKP EEKKAE+ PAEKKP+A KKLPKD G DKKKK++KKSVETYKIYIF
Sbjct: 1   MAPKAGKKPAEKKPVEEKKAEEVPAEKKPKAGKKLPKDAGADKKKKKSKKSVETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQESS+LAR NKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARINKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 142
           PGELAKHAVSEGTKAVTKFTS+
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSN 142

[Close]

BLAST of Sed0009459 vs. ExPASy Swiss-Prot
Match: O23629 (Histone H2B.6 OS=Arabidopsis thaliana OX=3702 GN=H2B PE=1 SV=3)

HSP 1 Score: 225.7 bits (574), Expect = 3.3e-58
Identity = 133/150 (88.67%), Postives = 136/150 (90.67%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEK------KAEKAPAEKKPRAEKKLPKD---GGDKKKKRTKKSV 60
           MAP+AEKKPAEKKPA EK      KAEKAPAEKKP+A KKLPK+   GGDKKKK  KKSV
Sbjct: 1   MAPRAEKKPAEKKPAAEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 120
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREI 120

Query: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 142
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Sed0009459 vs. ExPASy TrEMBL
Match: A0A2P5XPL9 (Histone H2B OS=Gossypium barbadense OX=3634 GN=ES319_A09G092200v1 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 3.0e-62
Identity = 137/141 (97.16%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGGDKKKKRTKKSVETYKIYIFK 60
           MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPK+ GDKKKKRTKKS+ETYKIYIFK
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKEAGDKKKKRTKKSIETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTSS 142
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 121 GELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of Sed0009459 vs. ExPASy TrEMBL
Match: A0A6J1FBJ0 (Histone H2B OS=Cucurbita moschata OX=3662 GN=LOC111443930 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 3.0e-62
Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGGDKKKKRTKKSVETYKIYIFK 60
           MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDG DKKKK+ KKSVETYKIYIFK
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGADKKKKKAKKSVETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTSS 142
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 121 GELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of Sed0009459 vs. ExPASy TrEMBL
Match: A0A6J1I2W4 (Histone H2B OS=Cucurbita maxima OX=3661 GN=LOC111468523 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 3.0e-62
Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGGDKKKKRTKKSVETYKIYIFK 60
           MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDG DKKKK+ KKSVETYKIYIFK
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGADKKKKKAKKSVETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTSS 142
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 121 GELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of Sed0009459 vs. ExPASy TrEMBL
Match: A0A5D2P0V1 (Histone H2B OS=Gossypium tomentosum OX=34277 GN=ES332_A09G106600v1 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 3.0e-62
Identity = 137/141 (97.16%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGGDKKKKRTKKSVETYKIYIFK 60
           MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPK+ GDKKKKRTKKS+ETYKIYIFK
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKEAGDKKKKRTKKSIETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTSS 142
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 121 GELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of Sed0009459 vs. ExPASy TrEMBL
Match: A0A6P4M0C5 (Histone H2B OS=Gossypium arboreum OX=29729 GN=LOC108453035 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 3.0e-62
Identity = 137/141 (97.16%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGGDKKKKRTKKSVETYKIYIFK 60
           MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPK+ GDKKKKRTKKS+ETYKIYIFK
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKEAGDKKKKRTKKSIETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTSS 142
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 121 GELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of Sed0009459 vs. TAIR 10
Match: AT3G46030.1 (Histone superfamily protein )

HSP 1 Score: 229.6 bits (584), Expect = 1.6e-60
Identity = 134/145 (92.41%), Postives = 136/145 (93.79%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEK-KAEKAPAEKKPRAEKKLPKD---GGDKKKKRTKKSVETYKI 60
           MAPKAEKKPAEKKP EEK KAEKAPAEKKP+A KKLPK+   GGDKKKK  KKSVETYKI
Sbjct: 1   MAPKAEKKPAEKKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYKI 60

Query: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVR 120
           YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREIQTAVR
Sbjct: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVR 120

Query: 121 LVLPGELAKHAVSEGTKAVTKFTSS 142
           LVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 LVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of Sed0009459 vs. TAIR 10
Match: AT5G59910.1 (Histone superfamily protein )

HSP 1 Score: 228.0 bits (580), Expect = 4.7e-60
Identity = 134/150 (89.33%), Postives = 137/150 (91.33%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEK------KAEKAPAEKKPRAEKKLPKD---GGDKKKKRTKKSV 60
           MAPKAEKKPAEKKPA EK      KAEKAPAEKKP+A KKLPK+   GGDKKKK  KKSV
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 120
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 120

Query: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 142
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Sed0009459 vs. TAIR 10
Match: AT3G45980.1 (Histone superfamily protein )

HSP 1 Score: 225.7 bits (574), Expect = 2.3e-59
Identity = 133/150 (88.67%), Postives = 136/150 (90.67%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEK------KAEKAPAEKKPRAEKKLPKD---GGDKKKKRTKKSV 60
           MAP+AEKKPAEKKPA EK      KAEKAPAEKKP+A KKLPK+   GGDKKKK  KKSV
Sbjct: 1   MAPRAEKKPAEKKPAAEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 120
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREI 120

Query: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 142
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Sed0009459 vs. TAIR 10
Match: AT1G07790.1 (Histone superfamily protein )

HSP 1 Score: 223.0 bits (567), Expect = 1.5e-58
Identity = 131/148 (88.51%), Postives = 136/148 (91.89%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPA------EEKKAEKAPAEKKPRAEKKL-PKDGGDKKKKRTKKSVET 60
           MAP+AEKKPAEKK A      E K AEKAPAEKKP+A KKL PK+ GDKKKKR+KK+VET
Sbjct: 1   MAPRAEKKPAEKKTAAERPVEENKAAEKAPAEKKPKAGKKLPPKEAGDKKKKRSKKNVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 142
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of Sed0009459 vs. TAIR 10
Match: AT2G28720.1 (Histone superfamily protein )

HSP 1 Score: 220.3 bits (560), Expect = 9.7e-58
Identity = 131/151 (86.75%), Postives = 135/151 (89.40%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPA------EEKKAEKAPAEKKPRAEKKLPKD----GGDKKKKRTKKS 60
           MAPKA KKPAEKKPA      EEK AEKAPAEKKP+A KKLPK+    G +KKKKR KKS
Sbjct: 1   MAPKAGKKPAEKKPAEKAPAEEEKVAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKKS 60

Query: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSRE 120
            ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSRE
Sbjct: 61  TETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 142
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

The following BLAST results are available for this feature:

BLAST of Sed0009459 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937557.1	6.1e-62	97.87	histone H2B-like [Cucurbita moschata] >XP_022937558.1 histone H2B-like [Cucurbit...	[more]
XP_017606405.1	6.1e-62	97.16	PREDICTED: histone H2B-like [Gossypium arboreum] >KAB2065488.1 hypothetical prot...	[more]
XP_016668873.1	1.0e-61	96.45	histone H2B-like [Gossypium hirsutum] >KAG4183114.1 hypothetical protein ERO13_A...	[more]
XP_021674558.1	1.4e-61	97.22	histone H2B-like [Hevea brasiliensis] >ADR30786.1 histone H2B1 [Hevea brasiliens...	[more]
KAG6586017.1	1.4e-61	97.16	hypothetical protein SDJN03_18750, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0009459 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22582	2.7e-60	91.84	Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3	[more]
Q9LZT0	2.3e-59	92.41	Histone H2B.7 OS=Arabidopsis thaliana OX=3702 GN=At3g46030 PE=1 SV=3	[more]
P40283	6.6e-59	89.33	Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5	[more]
O65821	3.3e-58	90.14	Histone H2B.1 OS=Solanum lycopersicum OX=4081 GN=H2B-1 PE=2 SV=4	[more]
O23629	3.3e-58	88.67	Histone H2B.6 OS=Arabidopsis thaliana OX=3702 GN=H2B PE=1 SV=3	[more]

BLAST of Sed0009459 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5XPL9	3.0e-62	97.16	Histone H2B OS=Gossypium barbadense OX=3634 GN=ES319_A09G092200v1 PE=3 SV=1	[more]
A0A6J1FBJ0	3.0e-62	97.87	Histone H2B OS=Cucurbita moschata OX=3662 GN=LOC111443930 PE=3 SV=1	[more]
A0A6J1I2W4	3.0e-62	97.87	Histone H2B OS=Cucurbita maxima OX=3661 GN=LOC111468523 PE=3 SV=1	[more]
A0A5D2P0V1	3.0e-62	97.16	Histone H2B OS=Gossypium tomentosum OX=34277 GN=ES332_A09G106600v1 PE=3 SV=1	[more]
A0A6P4M0C5	3.0e-62	97.16	Histone H2B OS=Gossypium arboreum OX=29729 GN=LOC108453035 PE=3 SV=1	[more]

BLAST of Sed0009459 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46030.1	1.6e-60	92.41	Histone superfamily protein	[more]
AT5G59910.1	4.7e-60	89.33	Histone superfamily protein	[more]
AT3G45980.1	2.3e-59	88.67	Histone superfamily protein	[more]
AT1G07790.1	1.5e-58	88.51	Histone superfamily protein	[more]
AT2G28720.1	9.7e-58	86.75	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 73..93 score: 75.74 coord: 112..125 score: 92.45 coord: 54..72 score: 80.55 coord: 125..138 score: 92.65 coord: 95..112 score: 76.51
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 44..140 e-value: 4.0E-73 score: 258.9
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 5..141
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 109..131
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 4..117 e-value: 4.4E-23 score: 82.1
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 2..141 e-value: 2.5E-59 score: 200.8
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 26..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48
None	No IPR available	PANTHER	PTHR23428:SF231	HISTONE H2B	coord: 5..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0009459.1	Sed0009459.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity