Sed0009368 (gene) Chayote v1

Overview


Name	Sed0009368
Type	gene
Organism	Sechium edule (Chayote v1)
Description	60S ribosomal protein L28-1-like
Location	LG03: 11745414 .. 11747541 (-)
RNA-Seq Expression	Sed0009368
Synteny	Sed0009368

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTTTTCAGCAGAGCTTCCACTATATAACATCAGTGGGAGCTGAAGAAACGGCGAGCTCTCTTCAGTTTCTGCTCATCTTCTTCAAATTGTTGCCGAACAGGTTCGCTCATTCAGATCTTGATTTTTCCTGTCATTTTCATCATCTTCAATCAGATTCTGGCATCCTTACTTTGTATTCTGTTTGTTATTCATCGGATTTGTTGTTTTTTTGTAGATGGCGAACGTTCCGGGGCAATTGGTTTGGGAAATCGTTAAGAGGAACAACTCTTTTCTCGTTAAGGAGTTTGGCCGAGGCAATGCCGGCGTTCGATTCAGCAAAGAGCCTAACAACCTCTACAATCTCAACTCCTACAAGCATTCCGGTAAGATTCTAATCAGGTTATCGAATTGTTGAGTACAATCGTTTGAACTTTAAGAAACATCGAGGAATCAATTTGGGTTTTTTGTGTTTTTGTACTCAATGTGGGAATGCCTCTTGAATCATGTTTTAGTTCTTTCTGAGAGTTAATTTTTGTTTTTGGTTTGTGGAATGTTGTTTGTGGTCTTTTACAGGCTTGGCGAACTCCAAGACCGTGACCATTCAGGCAGGAGGCAAGGATTTGTCTGTGTTGCTTGCGACGACGAAGAAGAAGAAGCAGAACAAACCCGCGAGTTCGCTCCACAAATCGGTCATGAGGAAGGAATTTCCTCGCATGGCCAAGGCTGTGACTAATCAGGTAACTAGAAACTCAGGAATGGTTTTTCATTAGTGCCCATTGAGATGGATTTTGCGTTTGTCAAAACAATGCCCAGACTTTTGTTTATTATGTTAATTAACTTCCATATGGTTTTCTCACATTGGAATTGAAATGAATGTGCGTTGTTGCAGTGACGAGAAGCTAACATATAAGAAGAGCTGCTTTTGTAGCTGCATCTTCTATGAAATATATTTGTTACGCTTGGCTTCTGAGCACAATTTTCCTTTGTCTAACACATTAGACTGTTGGTGACCATATATAATGATTTAGTTTGGTATTGAGCTATTACCTGATTGCTGTTTAATATCACTATCTTCCATTGTCCGCAAAATTTTAGCTGCTTTAGGTGTTTATGCAATGAATTAGGCCGAAGGTGAATTGTTGCAATGACCGGAAGAGCTAACATGTAAGAATGGCTGCATTTGTAGTGGCATCTTACGATGGGCTTCTGTGCATCACTTCTCTTCTTTGTTGCAAATAGCTTCCATTTATTATTTTATTTGCTTGATTTATGGTGTAGGCTTAAGGATTGAAGGAGACAGTCCTTCAAGAATCACACTATTATGAATTACATGAAACCCTCTATTTATTAGGAAAATAAAGTTAAAAATTAACTTCTGAGAATTACCAAGATAACCTAGCTTTACTAATCTTTCCCATCTTGATCTCTGGTTACCTAGCACCTTTCTTAATCTTCCTGTAAGTTAAAATTAGTGTAACTGGTACTGCGATGAGCGATGATGAGCCGCTAACATGTAAGAAGGTGTTGCTTTTGTAGTAACATTTTCAATGAAATCTTTTTGTTACGCTTGGCTTCTGAGCATTAATTTATATACTCCTCCCACCCCTTCGAAGATCTGTTTCTGTTAAATCCACTTGATTCAGTGAGTATACTTGTTGAATTGTGCAGGTGGCTGACAATTTCTATCGCCCAGACTTGAAGCAGGCTGCCCTTGCCAAGCTAAGTGCTGTTCACAGGAGCCTAAAAGTTGCCAAATCTGGTGTGAAGAAGAGGAACAGGCAGGCTGTTAGGAAGTGAAACAATGTTTTTTCATAAAGGTTTTCTTGTTTTTCTATTTGAGTTTTTTAAAACCCATTTTTCCACCCTTCTACTGGGAGATTTGCAGGGCTTTACCAGAAGTTTAAATTTAAATTTTTGTGTACCCTACTTGAAATTTTGGATTATATTTGAGTTCATTTCATTTGGAATTTTGTTATTTCATCAGAAGATAAATGATATGAGGATAAATTCTTGAATGGAGTAGGGTTCCTGTGAGAAAAGTTTAGTGCGTGGTTTAGTATTAATAAGATATCTAGATCATTTTTTTCCCCTCTTTGATTTGTTTCCATGACAGATGAATTACCCATGATATATCTCTCATGTTTCC

mRNA sequence

GTTTTTTTCAGCAGAGCTTCCACTATATAACATCAGTGGGAGCTGAAGAAACGGCGAGCTCTCTTCAGTTTCTGCTCATCTTCTTCAAATTGTTGCCGAACAGATGGCGAACGTTCCGGGGCAATTGGTTTGGGAAATCGTTAAGAGGAACAACTCTTTTCTCGTTAAGGAGTTTGGCCGAGGCAATGCCGGCGTTCGATTCAGCAAAGAGCCTAACAACCTCTACAATCTCAACTCCTACAAGCATTCCGGCTTGGCGAACTCCAAGACCGTGACCATTCAGGCAGGAGGCAAGGATTTGTCTGTGTTGCTTGCGACGACGAAGAAGAAGAAGCAGAACAAACCCGCGAGTTCGCTCCACAAATCGGTCATGAGGAAGGAATTTCCTCGCATGGCCAAGGCTGTGACTAATCAGGTGGCTGACAATTTCTATCGCCCAGACTTGAAGCAGGCTGCCCTTGCCAAGCTAAGTGCTGTTCACAGGAGCCTAAAAGTTGCCAAATCTGGTGTGAAGAAGAGGAACAGGCAGGCTGTTAGGAAGTGAAACAATGTTTTTTCATAAAGGTTTTCTTGTTTTTCTATTTGAGTTTTTTAAAACCCATTTTTCCACCCTTCTACTGGGAGATTTGCAGGGCTTTACCAGAAGTTTAAATTTAAATTTTTGTGTACCCTACTTGAAATTTTGGATTATATTTGAGTTCATTTCATTTGGAATTTTGTTATTTCATCAGAAGATAAATGATATGAGGATAAATTCTTGAATGGAGTAGGGTTCCTGTGAGAAAAGTTTAGTGCGTGGTTTAGTATTAATAAGATATCTAGATCATTTTTTTCCCCTCTTTGATTTGTTTCCATGACAGATGAATTACCCATGATATATCTCTCATGTTTCC

Coding sequence (CDS)

ATGGCGAACGTTCCGGGGCAATTGGTTTGGGAAATCGTTAAGAGGAACAACTCTTTTCTCGTTAAGGAGTTTGGCCGAGGCAATGCCGGCGTTCGATTCAGCAAAGAGCCTAACAACCTCTACAATCTCAACTCCTACAAGCATTCCGGCTTGGCGAACTCCAAGACCGTGACCATTCAGGCAGGAGGCAAGGATTTGTCTGTGTTGCTTGCGACGACGAAGAAGAAGAAGCAGAACAAACCCGCGAGTTCGCTCCACAAATCGGTCATGAGGAAGGAATTTCCTCGCATGGCCAAGGCTGTGACTAATCAGGTGGCTGACAATTTCTATCGCCCAGACTTGAAGCAGGCTGCCCTTGCCAAGCTAAGTGCTGTTCACAGGAGCCTAAAAGTTGCCAAATCTGGTGTGAAGAAGAGGAACAGGCAGGCTGTTAGGAAGTGA

Protein sequence

MANVPGQLVWEIVKRNNSFLVKEFGRGNAGVRFSKEPNNLYNLNSYKHSGLANSKTVTIQAGGKDLSVLLATTKKKKQNKPASSLHKSVMRKEFPRMAKAVTNQVADNFYRPDLKQAALAKLSAVHRSLKVAKSGVKKRNRQAVRK

Homology

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BLAST of Sed0009368 vs. NCBI nr
Match: XP_038889445.1 (60S ribosomal protein L28-1-like [Benincasa hispida])

HSP 1 Score: 256.5 bits (654), Expect = 1.4e-64
Identity = 132/145 (91.03%), Postives = 138/145 (95.17%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKRNNSFLVKEFGRGNAGVRFSKEPNNLYNLNSYKHSGLANSKTVTIQ 60
           MANVPGQLVWEIVK+N+SFL KEFGRGNA ++FSKEPNNLYNLNSYKHSGLAN KTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSSFLFKEFGRGNASIQFSKEPNNLYNLNSYKHSGLANQKTVTIQ 60

Query: 61  AGGKDLSVLLATTKKKKQNKPASSLHKSVMRKEFPRMAKAVTNQVADNFYRPDLKQAALA 120
            GGKDLSVLLATTK KKQNKPAS LHKS+MRKEFPRMAKAVTNQVADN+YRPDLK AALA
Sbjct: 61  PGGKDLSVLLATTKTKKQNKPASLLHKSIMRKEFPRMAKAVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQAVR 146
           KLSAVHRSLKVAKSGVKKRNRQAVR
Sbjct: 121 KLSAVHRSLKVAKSGVKKRNRQAVR 145

[Close]

BLAST of Sed0009368 vs. NCBI nr
Match: XP_022154747.1 (60S ribosomal protein L28-1-like [Momordica charantia])

HSP 1 Score: 256.1 bits (653), Expect = 1.8e-64
Identity = 132/145 (91.03%), Postives = 139/145 (95.86%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKRNNSFLVKEFGRGNAGVRFSKEPNNLYNLNSYKHSGLANSKTVTIQ 60
           MANVPGQLVWEIVK+NNSFLVKEFGRGNAGV+FSKEPNNLYNLNSYKHSGLAN KTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNNSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60

Query: 61  AGGKDLSVLLATTKKKKQNKPASSLHKSVMRKEFPRMAKAVTNQVADNFYRPDLKQAALA 120
            GGKDLSVLLATTK KKQNKPAS LH+SVMRKEFPRMAKAV NQVADN+YRPDLK+AALA
Sbjct: 61  PGGKDLSVLLATTKAKKQNKPASLLHRSVMRKEFPRMAKAVINQVADNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQAVR 146
           KLS VHRSLKVAKSGVKKRNRQA++
Sbjct: 121 KLSVVHRSLKVAKSGVKKRNRQALK 145

[Close]

BLAST of Sed0009368 vs. NCBI nr
Match: XP_022999539.1 (60S ribosomal protein L28-1-like [Cucurbita maxima] >XP_022999540.1 60S ribosomal protein L28-1-like [Cucurbita maxima])

HSP 1 Score: 253.8 bits (647), Expect = 8.8e-64
Identity = 131/145 (90.34%), Postives = 140/145 (96.55%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKRNNSFLVKEFGRGNAGVRFSKEPNNLYNLNSYKHSGLANSKTVTIQ 60
           MANVPGQLVWEIVK+N+ FLVKEFGRG+AGV+FSKEPNNLYNLNSYKHSGLAN KTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSCFLVKEFGRGSAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  AGGKDLSVLLATTKKKKQNKPASSLHKSVMRKEFPRMAKAVTNQVADNFYRPDLKQAALA 120
            GGKDLSVLLATTK+KKQNKPAS L+KSVMRKEFP MAKAVTNQVADN+YRPDLK+AALA
Sbjct: 61  PGGKDLSVLLATTKRKKQNKPASLLNKSVMRKEFPSMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQAVR 146
           KLSAVHRSLK+AKSGVKKRNRQAVR
Sbjct: 121 KLSAVHRSLKIAKSGVKKRNRQAVR 145

[Close]

BLAST of Sed0009368 vs. NCBI nr
Match: XP_022938097.1 (60S ribosomal protein L28-2-like [Cucurbita moschata])

HSP 1 Score: 253.4 bits (646), Expect = 1.2e-63
Identity = 128/145 (88.28%), Postives = 138/145 (95.17%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKRNNSFLVKEFGRGNAGVRFSKEPNNLYNLNSYKHSGLANSKTVTIQ 60
           MANVPGQLVWEIVK+N+SFLVKEFGRGNAGV+FSKEPNNLYNLNSYKHSGLAN KTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60

Query: 61  AGGKDLSVLLATTKKKKQNKPASSLHKSVMRKEFPRMAKAVTNQVADNFYRPDLKQAALA 120
           AGGKDLS+L+ATTK KKQNKPAS LHKS+ RKEFPRM K VTNQVADN+YRPDLK AALA
Sbjct: 61  AGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQAVR 146
           KLSAVHRSLKVA+SGVKKRNRQA++
Sbjct: 121 KLSAVHRSLKVARSGVKKRNRQAIK 145

[Close]

BLAST of Sed0009368 vs. NCBI nr
Match: XP_008459233.1 (PREDICTED: 60S ribosomal protein L28-1-like [Cucumis melo])

HSP 1 Score: 253.4 bits (646), Expect = 1.2e-63
Identity = 132/145 (91.03%), Postives = 139/145 (95.86%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKRNNSFLVKEFGRGNAGVRFSKEPNNLYNLNSYKHSGLANSKTVTIQ 60
           MANVPGQLVWEIVK+N+SFLVKEFGRGNA V+FSKEPNNLY+LNSYKHSGLAN KTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYSLNSYKHSGLANLKTVTIQ 60

Query: 61  AGGKDLSVLLATTKKKKQNKPASSLHKSVMRKEFPRMAKAVTNQVADNFYRPDLKQAALA 120
            GGKDLSVLLAT+K KKQNKPA+SLHKSVMRKEFPRMAKAVTNQVADN+YRPDLK AALA
Sbjct: 61  PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQAVR 146
           KLSAVHRSLKVAKSGVKK NRQAVR
Sbjct: 121 KLSAVHRSLKVAKSGVKKGNRQAVR 145

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BLAST of Sed0009368 vs. ExPASy Swiss-Prot
Match: Q9M0E2 (60S ribosomal protein L28-2 OS=Arabidopsis thaliana OX=3702 GN=RPL28C PE=2 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 7.3e-53
Identity = 104/143 (72.73%), Postives = 123/143 (86.01%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKRNNSFLVKEFGRGNAGVRFSKEPNNLYNLNSYKHSGLANSKTVTIQ 60
           MA VPGQL+WEIVKRNN FLVK+FGRGNA V+FSKE NNL N+NSYKHSGLAN KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  AGGKDLSVLLATTKKKKQNKPASSLHKSVMRKEFPRMAKAVTNQVADNFYRPDLKQAALA 120
           A GKD  V+L TTK K+QNKP  S++KS+++KEF RM+K V NQV DN+YRPDLK+AALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQA 144
           +LSA+ + L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of Sed0009368 vs. ExPASy Swiss-Prot
Match: O82204 (60S ribosomal protein L28-1 OS=Arabidopsis thaliana OX=3702 GN=RPL28A PE=1 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 9.5e-53
Identity = 104/143 (72.73%), Postives = 125/143 (87.41%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKRNNSFLVKEFGRGNAGVRFSKEPNNLYNLNSYKHSGLANSKTVTIQ 60
           MA VPGQL+WEIVK NN FLVK+FGRGN+ V+FSKE NNL N++SYKHSGLAN KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  AGGKDLSVLLATTKKKKQNKPASSLHKSVMRKEFPRMAKAVTNQVADNFYRPDLKQAALA 120
           A  KD +V+LATTK KKQNKP  S++KS+++KEFPRM+KAV NQV DN+YRPDLK+AALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQA 144
           +LSA+ + L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of Sed0009368 vs. ExPASy Swiss-Prot
Match: O14069 (Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpl44 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.1e-12
Identity = 46/135 (34.07%), Postives = 73/135 (54.07%), Query Frame = 0


Query: 3   NVPGQLVWEIVKRNNSFLVK--EFGRGNAGVRFSKEPNNLYNLNSYKHSGLANSKTVTIQ 62
           +V   L+W++++ NN FLVK  EFG    G++F++EP N+   N+ + SGL N K V +Q
Sbjct: 2   SVSNDLIWQVIRDNNRFLVKRPEFG----GIQFNREPVNVSGKNAQRFSGLCNDKAVGVQ 61

Query: 63  AGGKDLSVLLATTKKKKQNKPASSLHKSVMRKEFPRMA-KAVTNQVADNFYRPDLKQAAL 122
           A      VL+  T  K   KPA    K V+     R   K++  ++    YR DL + ++
Sbjct: 62  ANSPRGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSV 121

Query: 123 AKLSAVHRSLKVAKS 135
           A+ SA+  S +  K+
Sbjct: 122 ARASAILSSQRPKKT 132

[Close]

BLAST of Sed0009368 vs. ExPASy Swiss-Prot
Match: Q3T0L7 (60S ribosomal protein L28 OS=Bos taurus OX=9913 GN=RPL28 PE=2 SV=3)

HSP 1 Score: 70.1 bits (170), Expect = 2.4e-11
Identity = 40/123 (32.52%), Postives = 69/123 (56.10%), Query Frame = 0


Query: 8   LVWEIVKRNNSFLVKEFGRGNAGVRFSKEPNNLYNLNSYKHSGLANSKTVTIQAGGKDLS 67
           L W +V+  +SFL+K   +      +S EPNNL   NS++++GL + KTV ++       
Sbjct: 5   LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 64

Query: 68  VLLATTKKKKQNKPASSLHKSVMRKEFPRMAKAVTNQVADNFYRPDLKQAALAKLSAVHR 127
           V++   ++  Q KPA+S  ++ + K       ++ + +  N YRPDL+ AA+ + SA+ R
Sbjct: 65  VVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILR 122

Query: 128 SLK 131
           S K
Sbjct: 125 SQK 122

[Close]

BLAST of Sed0009368 vs. ExPASy Swiss-Prot
Match: P46779 (60S ribosomal protein L28 OS=Homo sapiens OX=9606 GN=RPL28 PE=1 SV=3)

HSP 1 Score: 70.1 bits (170), Expect = 2.4e-11
Identity = 40/123 (32.52%), Postives = 69/123 (56.10%), Query Frame = 0


Query: 8   LVWEIVKRNNSFLVKEFGRGNAGVRFSKEPNNLYNLNSYKHSGLANSKTVTIQAGGKDLS 67
           L W +V+  +SFL+K   +      +S EPNNL   NS++++GL + KTV ++       
Sbjct: 5   LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 64

Query: 68  VLLATTKKKKQNKPASSLHKSVMRKEFPRMAKAVTNQVADNFYRPDLKQAALAKLSAVHR 127
           V++   ++  Q KPA+S  ++ + K       ++ + +  N YRPDL+ AA+ + SA+ R
Sbjct: 65  VVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILR 122

Query: 128 SLK 131
           S K
Sbjct: 125 SQK 122

[Close]

BLAST of Sed0009368 vs. ExPASy TrEMBL
Match: A0A6J1DMI9 (60S ribosomal protein L28-1-like OS=Momordica charantia OX=3673 GN=LOC111021927 PE=3 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 8.6e-65
Identity = 132/145 (91.03%), Postives = 139/145 (95.86%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKRNNSFLVKEFGRGNAGVRFSKEPNNLYNLNSYKHSGLANSKTVTIQ 60
           MANVPGQLVWEIVK+NNSFLVKEFGRGNAGV+FSKEPNNLYNLNSYKHSGLAN KTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNNSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60

Query: 61  AGGKDLSVLLATTKKKKQNKPASSLHKSVMRKEFPRMAKAVTNQVADNFYRPDLKQAALA 120
            GGKDLSVLLATTK KKQNKPAS LH+SVMRKEFPRMAKAV NQVADN+YRPDLK+AALA
Sbjct: 61  PGGKDLSVLLATTKAKKQNKPASLLHRSVMRKEFPRMAKAVINQVADNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQAVR 146
           KLS VHRSLKVAKSGVKKRNRQA++
Sbjct: 121 KLSVVHRSLKVAKSGVKKRNRQALK 145

[Close]

BLAST of Sed0009368 vs. ExPASy TrEMBL
Match: A0A6J1KHD5 (60S ribosomal protein L28-1-like OS=Cucurbita maxima OX=3661 GN=LOC111493869 PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 4.3e-64
Identity = 131/145 (90.34%), Postives = 140/145 (96.55%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKRNNSFLVKEFGRGNAGVRFSKEPNNLYNLNSYKHSGLANSKTVTIQ 60
           MANVPGQLVWEIVK+N+ FLVKEFGRG+AGV+FSKEPNNLYNLNSYKHSGLAN KTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSCFLVKEFGRGSAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  AGGKDLSVLLATTKKKKQNKPASSLHKSVMRKEFPRMAKAVTNQVADNFYRPDLKQAALA 120
            GGKDLSVLLATTK+KKQNKPAS L+KSVMRKEFP MAKAVTNQVADN+YRPDLK+AALA
Sbjct: 61  PGGKDLSVLLATTKRKKQNKPASLLNKSVMRKEFPSMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQAVR 146
           KLSAVHRSLK+AKSGVKKRNRQAVR
Sbjct: 121 KLSAVHRSLKIAKSGVKKRNRQAVR 145

[Close]

BLAST of Sed0009368 vs. ExPASy TrEMBL
Match: A0A6J1FD25 (60S ribosomal protein L28-2-like OS=Cucurbita moschata OX=3662 GN=LOC111444289 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 5.6e-64
Identity = 128/145 (88.28%), Postives = 138/145 (95.17%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKRNNSFLVKEFGRGNAGVRFSKEPNNLYNLNSYKHSGLANSKTVTIQ 60
           MANVPGQLVWEIVK+N+SFLVKEFGRGNAGV+FSKEPNNLYNLNSYKHSGLAN KTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60

Query: 61  AGGKDLSVLLATTKKKKQNKPASSLHKSVMRKEFPRMAKAVTNQVADNFYRPDLKQAALA 120
           AGGKDLS+L+ATTK KKQNKPAS LHKS+ RKEFPRM K VTNQVADN+YRPDLK AALA
Sbjct: 61  AGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQAVR 146
           KLSAVHRSLKVA+SGVKKRNRQA++
Sbjct: 121 KLSAVHRSLKVARSGVKKRNRQAIK 145

[Close]

BLAST of Sed0009368 vs. ExPASy TrEMBL
Match: A0A1S3CAX2 (60S ribosomal protein L28-1-like OS=Cucumis melo OX=3656 GN=LOC103498417 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 5.6e-64
Identity = 132/145 (91.03%), Postives = 139/145 (95.86%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKRNNSFLVKEFGRGNAGVRFSKEPNNLYNLNSYKHSGLANSKTVTIQ 60
           MANVPGQLVWEIVK+N+SFLVKEFGRGNA V+FSKEPNNLY+LNSYKHSGLAN KTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYSLNSYKHSGLANLKTVTIQ 60

Query: 61  AGGKDLSVLLATTKKKKQNKPASSLHKSVMRKEFPRMAKAVTNQVADNFYRPDLKQAALA 120
            GGKDLSVLLAT+K KKQNKPA+SLHKSVMRKEFPRMAKAVTNQVADN+YRPDLK AALA
Sbjct: 61  PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQAVR 146
           KLSAVHRSLKVAKSGVKK NRQAVR
Sbjct: 121 KLSAVHRSLKVAKSGVKKGNRQAVR 145

[Close]

BLAST of Sed0009368 vs. ExPASy TrEMBL
Match: A0A0A0LHT1 (Ribosomal_L28e domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000570 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 7.3e-64
Identity = 131/146 (89.73%), Postives = 139/146 (95.21%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKRNNSFLVKEFGRGNAGVRFSKEPNNLYNLNSYKHSGLANSKTVTIQ 60
           MANVPGQLVWEIVK+N+SFLVKEFGRGNA V+FSKEPNNLYNLNSYKHSGLAN KTVTIQ
Sbjct: 47  MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 106

Query: 61  AGGKDLSVLLATTKKKKQNKPASSLHKSVMRKEFPRMAKAVTNQVADNFYRPDLKQAALA 120
            GGKDLSVLLAT+K KKQNKPA+SLHKSVMRKEFPRMAKAV NQVADN+YRPDLK AALA
Sbjct: 107 PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVINQVADNYYRPDLKNAALA 166

Query: 121 KLSAVHRSLKVAKSGVKKRNRQAVRK 147
           KLSAVHRSLKVAKSGVKKRNRQ+V +
Sbjct: 167 KLSAVHRSLKVAKSGVKKRNRQSVTR 192

[Close]

BLAST of Sed0009368 vs. TAIR 10
Match: AT4G29410.1 (Ribosomal L28e protein family )

HSP 1 Score: 208.0 bits (528), Expect = 5.2e-54
Identity = 104/143 (72.73%), Postives = 123/143 (86.01%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKRNNSFLVKEFGRGNAGVRFSKEPNNLYNLNSYKHSGLANSKTVTIQ 60
           MA VPGQL+WEIVKRNN FLVK+FGRGNA V+FSKE NNL N+NSYKHSGLAN KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  AGGKDLSVLLATTKKKKQNKPASSLHKSVMRKEFPRMAKAVTNQVADNFYRPDLKQAALA 120
           A GKD  V+L TTK K+QNKP  S++KS+++KEF RM+K V NQV DN+YRPDLK+AALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQA 144
           +LSA+ + L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of Sed0009368 vs. TAIR 10
Match: AT4G29410.2 (Ribosomal L28e protein family )

HSP 1 Score: 208.0 bits (528), Expect = 5.2e-54
Identity = 104/143 (72.73%), Postives = 123/143 (86.01%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKRNNSFLVKEFGRGNAGVRFSKEPNNLYNLNSYKHSGLANSKTVTIQ 60
           MA VPGQL+WEIVKRNN FLVK+FGRGNA V+FSKE NNL N+NSYKHSGLAN KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  AGGKDLSVLLATTKKKKQNKPASSLHKSVMRKEFPRMAKAVTNQVADNFYRPDLKQAALA 120
           A GKD  V+L TTK K+QNKP  S++KS+++KEF RM+K V NQV DN+YRPDLK+AALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQA 144
           +LSA+ + L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of Sed0009368 vs. TAIR 10
Match: AT2G19730.1 (Ribosomal L28e protein family )

HSP 1 Score: 207.6 bits (527), Expect = 6.7e-54
Identity = 104/143 (72.73%), Postives = 125/143 (87.41%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKRNNSFLVKEFGRGNAGVRFSKEPNNLYNLNSYKHSGLANSKTVTIQ 60
           MA VPGQL+WEIVK NN FLVK+FGRGN+ V+FSKE NNL N++SYKHSGLAN KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  AGGKDLSVLLATTKKKKQNKPASSLHKSVMRKEFPRMAKAVTNQVADNFYRPDLKQAALA 120
           A  KD +V+LATTK KKQNKP  S++KS+++KEFPRM+KAV NQV DN+YRPDLK+AALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQA 144
           +LSA+ + L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of Sed0009368 vs. TAIR 10
Match: AT2G19730.2 (Ribosomal L28e protein family )

HSP 1 Score: 207.6 bits (527), Expect = 6.7e-54
Identity = 104/143 (72.73%), Postives = 125/143 (87.41%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKRNNSFLVKEFGRGNAGVRFSKEPNNLYNLNSYKHSGLANSKTVTIQ 60
           MA VPGQL+WEIVK NN FLVK+FGRGN+ V+FSKE NNL N++SYKHSGLAN KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  AGGKDLSVLLATTKKKKQNKPASSLHKSVMRKEFPRMAKAVTNQVADNFYRPDLKQAALA 120
           A  KD +V+LATTK KKQNKP  S++KS+++KEFPRM+KAV NQV DN+YRPDLK+AALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQA 144
           +LSA+ + L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of Sed0009368 vs. TAIR 10
Match: AT2G19730.3 (Ribosomal L28e protein family )

HSP 1 Score: 207.6 bits (527), Expect = 6.7e-54
Identity = 104/143 (72.73%), Postives = 125/143 (87.41%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKRNNSFLVKEFGRGNAGVRFSKEPNNLYNLNSYKHSGLANSKTVTIQ 60
           MA VPGQL+WEIVK NN FLVK+FGRGN+ V+FSKE NNL N++SYKHSGLAN KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  AGGKDLSVLLATTKKKKQNKPASSLHKSVMRKEFPRMAKAVTNQVADNFYRPDLKQAALA 120
           A  KD +V+LATTK KKQNKP  S++KS+++KEFPRM+KAV NQV DN+YRPDLK+AALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQA 144
           +LSA+ + L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

The following BLAST results are available for this feature:

BLAST of Sed0009368 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889445.1	1.4e-64	91.03	60S ribosomal protein L28-1-like [Benincasa hispida]	[more]
XP_022154747.1	1.8e-64	91.03	60S ribosomal protein L28-1-like [Momordica charantia]	[more]
XP_022999539.1	8.8e-64	90.34	60S ribosomal protein L28-1-like [Cucurbita maxima] >XP_022999540.1 60S ribosoma...	[more]
XP_022938097.1	1.2e-63	88.28	60S ribosomal protein L28-2-like [Cucurbita moschata]	[more]
XP_008459233.1	1.2e-63	91.03	PREDICTED: 60S ribosomal protein L28-1-like [Cucumis melo]	[more]

BLAST of Sed0009368 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M0E2	7.3e-53	72.73	60S ribosomal protein L28-2 OS=Arabidopsis thaliana OX=3702 GN=RPL28C PE=2 SV=1	[more]
O82204	9.5e-53	72.73	60S ribosomal protein L28-1 OS=Arabidopsis thaliana OX=3702 GN=RPL28A PE=1 SV=1	[more]
O14069	2.1e-12	34.07	Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe (strain 972 / A...	[more]
Q3T0L7	2.4e-11	32.52	60S ribosomal protein L28 OS=Bos taurus OX=9913 GN=RPL28 PE=2 SV=3	[more]
P46779	2.4e-11	32.52	60S ribosomal protein L28 OS=Homo sapiens OX=9606 GN=RPL28 PE=1 SV=3	[more]

BLAST of Sed0009368 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DMI9	8.6e-65	91.03	60S ribosomal protein L28-1-like OS=Momordica charantia OX=3673 GN=LOC111021927 ...	[more]
A0A6J1KHD5	4.3e-64	90.34	60S ribosomal protein L28-1-like OS=Cucurbita maxima OX=3661 GN=LOC111493869 PE=...	[more]
A0A6J1FD25	5.6e-64	88.28	60S ribosomal protein L28-2-like OS=Cucurbita moschata OX=3662 GN=LOC111444289 P...	[more]
A0A1S3CAX2	5.6e-64	91.03	60S ribosomal protein L28-1-like OS=Cucumis melo OX=3656 GN=LOC103498417 PE=3 SV...	[more]
A0A0A0LHT1	7.3e-64	89.73	Ribosomal_L28e domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000...	[more]

BLAST of Sed0009368 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29410.1	5.2e-54	72.73	Ribosomal L28e protein family	[more]
AT4G29410.2	5.2e-54	72.73	Ribosomal L28e protein family	[more]
AT2G19730.1	6.7e-54	72.73	Ribosomal L28e protein family	[more]
AT2G19730.2	6.7e-54	72.73	Ribosomal L28e protein family	[more]
AT2G19730.3	6.7e-54	72.73	Ribosomal L28e protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029004	Ribosomal L28e/Mak16	PFAM	PF01778	Ribosomal_L28e	coord: 8..128 e-value: 2.9E-34 score: 118.2
None	No IPR available	GENE3D	3.30.390.110		coord: 6..133 e-value: 3.8E-44 score: 152.2
None	No IPR available	PANTHER	PTHR10544:SF19	60S RIBOSOMAL PROTEIN L28-1-LIKE	coord: 1..145
IPR002672	Ribosomal protein L28e	PANTHER	PTHR10544	60S RIBOSOMAL PROTEIN L28	coord: 1..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0009368.1	Sed0009368.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0006325	chromatin organization
biological_process	GO:0016573	histone acetylation
biological_process	GO:0006412	translation
cellular_component	GO:0005829	cytosol
cellular_component	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005840	ribosome
molecular_function	GO:0004402	histone acetyltransferase activity
molecular_function	GO:0015078	proton transmembrane transporter activity
molecular_function	GO:0003735	structural constituent of ribosome