Sed0009323 (gene) Chayote v1

Overview


Name	Sed0009323
Type	gene
Organism	Sechium edule (Chayote v1)
Description	F-box protein SKIP8
Location	LG02: 45415875 .. 45418276 (-)
RNA-Seq Expression	Sed0009323
Synteny	Sed0009323

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTCATCTTCCTCTACAGCTTCTGGACTTTATCGTCTTCGAAGATTACAGAAAAACCCTAATTTCAGAGCCTGAAACTCCTTGTCCTTGATCCCTTTTCACTCATCACTGGCTCGCAATTCTCAGCCGCCGTTGTTTATGCTGTAAATTCCCTCGGCCATGGCGCTCCATACATCTACTTTGTGCTGCAATGTGAGTACTGCTCTCTATTTCGTTGATGTCAATTTGTTTTGTTCTTCTGCATTCGTTGATGTAATTGATTTTTGTGCGTTCTTCGTTGTTGTAATTTGCCTCTCGGTGCGTTAATTTTGAAATATTTCAGTGATATTGTGATTCTCTAGGGTTTTGTTACCTTTGTCGGTAATCGGATGAACGTGCGATGTTCCCAGAGTTTTGAGGCGTTTCATCCTGGTTCTTCAGCTCTCCCTAAGTTTTCTTATTGTCTTCGTCGTGTCGGTTCTGGAAATGGAAATGGAAATTTCTGTAAGTTTCCTTGAATTGAGCTCAAATCTATTTCTCTATCTGCTGCATTTGAAATTTTTTTGAGCATTCGTTACTTTTTTGAAGTCTGAAGTTTGGAGCTAGTAACAATGTAGATACCTTACGTATAGATGGATACACTAGTTTTGTATAATTTAGCTTTTTTTTTTTTAAATTTTTGAAACAAGGGTAACCATGCCCATCTCTATGCCAGACAACGAAAGACATTGAAAAAGTAATGTCACGGGTGAATCTTGAACTTAGGATCTTGAAGGGAGCATACCTTCTAAGCCCAAATCTTCAACGACTCTGCCATCCCTTGGGGACTTTGTATAATTTAGCTTTTGGTAAATTATAAATTTGGTACATGTGGTTTCAAAAATTAGAATTTAATCCCAATCGTTTGAAGAAAGTTAGAATTTAGTACATATGGTTTTACAAATTAGAGTTTAGTCCCTATAATCACTATAATCAATTGTTCATGCGAATTGAGTATGTGGAAATTAGTTATTCATGTGTTAACGACTAACGATGATCAAATGGGTTAAATAACTTATTAGACAAAAAAACTGTATGAACAACTGATTTCCACATGTATAATATTGAATGATTAAGAATGACAAAATAGGGACTAAAATTTGACTTTCTTCCAACTATAAAAACTAAATTTTAGTTTTTGAAACCATAAAGACTATAGTCTAACAATCTTCCAACCATAGAGACTAAATTTATAATTTACCATTTAGCTTGTAGTCCAATTTAATCATCCACCTTGGGATCTAAGAGGATGGGGTATCAATCCATGGTATCCTTTTAATAGGGAATTAGTCTCCAAGGCGTGGCACAGTGATTGAAAACTTGGGTTTTGAAGGTATGCTCTCTTTAAGGTTCCTAGGTTTGAGACTCACTTGTGACATTACTCCTTTAATGTCTACCAGTGTCTGGCCTAGGGACGGACGTGGTTACCCTTGTTTCAAAAAAAAAAAAAAAAAAATTTTTGGAAGTTTTCTTGGCAACCATTGCCAAAATATTGTTATAACCGAGAGTTAGGTGATTTGTCTTGAGAATAGTAAAAGTGCTCATAAATAAGTCTTTGCGGATATCAAAATTCAAAACAATAAAATCTTGCTCCTGTCTTTTTTTTTTTTTTTACAATATTTGGAGTTCGGGAATTTAGACTCATAATCTCTTTATTATTGGTTTGTACATCTCTGGTTGGTGTTCCAATTTTGTCAATAAATGAGCATTTATTAATATCTAGTGCAGGGCCCTGACAAACGTCTAGGAGACTCATTTGGACCTTGCCAACTGAAAGCTGAGAATTCGAGTGGCGAAAGCGTTACAGTAGATGCAGAAACATTGGAACAGGACCTACAAAATGCCATTGCAGATGAAGACTACGCCAGAGCTGCACAAATCAGAGATACCTTGAAAGCTCTACAAGAAGATAGCAGAACTTCAGTAATGGCAGCCAATGCAAAGTTTTACGAAGCGTTTCGGACGGGGGATCTTGCTGCGATGCAAACTCTTTGGGCACGAGGAGACAGTGTCTGCTGCGTGCATCCGGGGATGAGGGGGATATCGGGGTACGAAGATGTCATAACCAGCTGGGAGTATGTATGGGCAAATTATGAGTTCCCATTGGAGATTCAACTGAAGGATGTTGAAGTTCATGCTAGAGGGGAAGTTGGGTATGTTACTTGTGTCGAATTGGTGAAGACCAAAGGTAGCAGTTGGGGGGGACAGTTCGTGACCAATGTGTTTGAGAGAATTAGTGGCCAATGGTTCATTTGTATTCACCATGCCTCTCCTATAGACTTGTAAATAAACATTCAAATGCTTGGAGGGAAAAACATTTTAATCGAGTTCAATTAACCAACCTGCTGATAAAAATAAGTAGGCAAAAATATTTTTTGTCCCTAA

mRNA sequence

CCTCATCTTCCTCTACAGCTTCTGGACTTTATCGTCTTCGAAGATTACAGAAAAACCCTAATTTCAGAGCCTGAAACTCCTTGTCCTTGATCCCTTTTCACTCATCACTGGCTCGCAATTCTCAGCCGCCGTTGTTTATGCTGTAAATTCCCTCGGCCATGGCGCTCCATACATCTACTTTGTGCTGCAATGGTTTTGTTACCTTTGTCGGTAATCGGATGAACGTGCGATGTTCCCAGAGTTTTGAGGCGTTTCATCCTGGTTCTTCAGCTCTCCCTAAGTTTTCTTATTGTCTTCGTCGTGTCGGTTCTGGAAATGGAAATGGAAATTTCTTGCAGGGCCCTGACAAACGTCTAGGAGACTCATTTGGACCTTGCCAACTGAAAGCTGAGAATTCGAGTGGCGAAAGCGTTACAGTAGATGCAGAAACATTGGAACAGGACCTACAAAATGCCATTGCAGATGAAGACTACGCCAGAGCTGCACAAATCAGAGATACCTTGAAAGCTCTACAAGAAGATAGCAGAACTTCAGTAATGGCAGCCAATGCAAAGTTTTACGAAGCGTTTCGGACGGGGGATCTTGCTGCGATGCAAACTCTTTGGGCACGAGGAGACAGTGTCTGCTGCGTGCATCCGGGGATGAGGGGGATATCGGGGTACGAAGATGTCATAACCAGCTGGGAGTATGTATGGGCAAATTATGAGTTCCCATTGGAGATTCAACTGAAGGATGTTGAAGTTCATGCTAGAGGGGAAGTTGGGTATGTTACTTGTGTCGAATTGGTGAAGACCAAAGGTAGCAGTTGGGGGGGACAGTTCGTGACCAATGTGTTTGAGAGAATTAGTGGCCAATGGTTCATTTGTATTCACCATGCCTCTCCTATAGACTTGTAAATAAACATTCAAATGCTTGGAGGGAAAAACATTTTAATCGAGTTCAATTAACCAACCTGCTGATAAAAATAAGTAGGCAAAAATATTTTTTGTCCCTAA

Coding sequence (CDS)

ATGGCGCTCCATACATCTACTTTGTGCTGCAATGGTTTTGTTACCTTTGTCGGTAATCGGATGAACGTGCGATGTTCCCAGAGTTTTGAGGCGTTTCATCCTGGTTCTTCAGCTCTCCCTAAGTTTTCTTATTGTCTTCGTCGTGTCGGTTCTGGAAATGGAAATGGAAATTTCTTGCAGGGCCCTGACAAACGTCTAGGAGACTCATTTGGACCTTGCCAACTGAAAGCTGAGAATTCGAGTGGCGAAAGCGTTACAGTAGATGCAGAAACATTGGAACAGGACCTACAAAATGCCATTGCAGATGAAGACTACGCCAGAGCTGCACAAATCAGAGATACCTTGAAAGCTCTACAAGAAGATAGCAGAACTTCAGTAATGGCAGCCAATGCAAAGTTTTACGAAGCGTTTCGGACGGGGGATCTTGCTGCGATGCAAACTCTTTGGGCACGAGGAGACAGTGTCTGCTGCGTGCATCCGGGGATGAGGGGGATATCGGGGTACGAAGATGTCATAACCAGCTGGGAGTATGTATGGGCAAATTATGAGTTCCCATTGGAGATTCAACTGAAGGATGTTGAAGTTCATGCTAGAGGGGAAGTTGGGTATGTTACTTGTGTCGAATTGGTGAAGACCAAAGGTAGCAGTTGGGGGGGACAGTTCGTGACCAATGTGTTTGAGAGAATTAGTGGCCAATGGTTCATTTGTATTCACCATGCCTCTCCTATAGACTTGTAA

Protein sequence

MALHTSTLCCNGFVTFVGNRMNVRCSQSFEAFHPGSSALPKFSYCLRRVGSGNGNGNFLQGPDKRLGDSFGPCQLKAENSSGESVTVDAETLEQDLQNAIADEDYARAAQIRDTLKALQEDSRTSVMAANAKFYEAFRTGDLAAMQTLWARGDSVCCVHPGMRGISGYEDVITSWEYVWANYEFPLEIQLKDVEVHARGEVGYVTCVELVKTKGSSWGGQFVTNVFERISGQWFICIHHASPIDL

Homology

[Close]

BLAST of Sed0009323 vs. NCBI nr
Match: XP_038904182.1 (uncharacterized protein LOC120090530 [Benincasa hispida] >XP_038904693.1 uncharacterized protein LOC120091000 [Benincasa hispida])

HSP 1 Score: 395.6 bits (1015), Expect = 3.1e-106
Identity = 199/262 (75.95%), Postives = 215/262 (82.06%), Query Frame = 0


Query: 1   MALHTSTLCCNGFVTFVGNRMNVRCSQSFEAFHPGSSALPK-----------------FS 60
           MALHTS LCCN  VTF+ NR +VRC Q+F  FH   SALPK                 F 
Sbjct: 1   MALHTSNLCCNDHVTFICNRKSVRCLQNFAVFHHLPSALPKQCEIGLVKSCRGGCGFLFP 60

Query: 61  YCLRRVGSGNGNGNFLQGPDKRLGDSFGPCQLKAENSSGESVTVDAETLEQDLQNAIADE 120
             LR V S NGN    +   + L  SF PCQLKAENSSGES+T+DAETLEQDLQNAIADE
Sbjct: 61  SSLRYVASRNGNFRPWKQTSRTL--SFRPCQLKAENSSGESITLDAETLEQDLQNAIADE 120

Query: 121 DYARAAQIRDTLKALQEDSRTSVMAANAKFYEAFRTGDLAAMQTLWARGDSVCCVHPGMR 180
           DYARAAQIRDTLKALQEDS+TSV+AANAKFY++F+TGDLA MQTLWARGDSVCCVHPGMR
Sbjct: 121 DYARAAQIRDTLKALQEDSKTSVLAANAKFYKSFQTGDLATMQTLWARGDSVCCVHPGMR 180

Query: 181 GISGYEDVITSWEYVWANYEFPLEIQLKDVEVHARGEVGYVTCVELVKTKGSSWGGQFVT 240
           GISGY DVITSWEYVWANYEFPLEIQLKDV+VHARG+VGYVTCVELVKTKGSSWGGQFVT
Sbjct: 181 GISGYNDVITSWEYVWANYEFPLEIQLKDVQVHARGDVGYVTCVELVKTKGSSWGGQFVT 240

Query: 241 NVFERISGQWFICIHHASPIDL 246
           NVFERI+GQWF+CIHHASPIDL
Sbjct: 241 NVFERINGQWFVCIHHASPIDL 260

[Close]

BLAST of Sed0009323 vs. NCBI nr
Match: XP_022971333.1 (uncharacterized protein LOC111470086 [Cucurbita maxima])

HSP 1 Score: 395.2 bits (1014), Expect = 4.1e-106
Identity = 199/262 (75.95%), Postives = 216/262 (82.44%), Query Frame = 0


Query: 1   MALHTSTLCCNGFVTFVGNRMNVRCSQSFEAFHPGSSALPK-----------------FS 60
           MALHTS+LCCNG+VTF+ NR NVRCSQS E FH   SALPK                 F 
Sbjct: 1   MALHTSSLCCNGYVTFISNRKNVRCSQSCEVFHHVPSALPKQYDIGFVKESTGGYGFLFP 60

Query: 61  YCLRRVGSGNGNGNFLQGPDKRLGDSFGPCQLKAENSSGESVTVDAETLEQDLQNAIADE 120
              R +GS  GN    +   + L  SF PCQLKAENSSGES+T+DAETL+QDLQNAIADE
Sbjct: 61  SIPRCLGSTIGNFRPCKQSTRML--SFRPCQLKAENSSGESITLDAETLKQDLQNAIADE 120

Query: 121 DYARAAQIRDTLKALQEDSRTSVMAANAKFYEAFRTGDLAAMQTLWARGDSVCCVHPGMR 180
           DYARAA+IRDTLKALQEDS+ SV AANAKFYE+FR GDLAAMQTLWARGDSVCCVHPGMR
Sbjct: 121 DYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMR 180

Query: 181 GISGYEDVITSWEYVWANYEFPLEIQLKDVEVHARGEVGYVTCVELVKTKGSSWGGQFVT 240
           GI GY++V+TSWEYVWANYEFPLEIQLKDVEVHARG+VGYVTCVELVKTKGSSWGGQFVT
Sbjct: 181 GILGYDNVMTSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVT 240

Query: 241 NVFERISGQWFICIHHASPIDL 246
           NVFERI+GQWFICIHHASPIDL
Sbjct: 241 NVFERINGQWFICIHHASPIDL 260

[Close]

BLAST of Sed0009323 vs. NCBI nr
Match: XP_004137747.1 (uncharacterized protein LOC101219393 [Cucumis sativus] >KGN58815.1 hypothetical protein Csa_001436 [Cucumis sativus])

HSP 1 Score: 395.2 bits (1014), Expect = 4.1e-106
Identity = 196/262 (74.81%), Postives = 215/262 (82.06%), Query Frame = 0


Query: 1   MALHTSTLCCNGFVTFVGNRMNVRCSQSFEAFHPGSSALPK-----------------FS 60
           MALHT  LCCN +VTF+ +R +VRCSQSF  FH   SA PK                   
Sbjct: 1   MALHTFNLCCNDYVTFISSRKSVRCSQSFSVFHHVPSAFPKQCEIRLVNSSSGGSGFLLP 60

Query: 61  YCLRRVGSGNGNGNFLQGPDKRLGDSFGPCQLKAENSSGESVTVDAETLEQDLQNAIADE 120
              R VGS NGN    +   ++L  SF PCQLKAENSSGES+T+DAETLEQDLQNAIADE
Sbjct: 61  SNFRHVGSRNGNFRPCKQASRKL--SFRPCQLKAENSSGESITLDAETLEQDLQNAIADE 120

Query: 121 DYARAAQIRDTLKALQEDSRTSVMAANAKFYEAFRTGDLAAMQTLWARGDSVCCVHPGMR 180
           DYARAA+IRDTLKALQEDS+T V+ ANAKFYE+FRTGDLAAMQTLWARG+SVCCVHPGMR
Sbjct: 121 DYARAAEIRDTLKALQEDSKTLVLTANAKFYESFRTGDLAAMQTLWARGNSVCCVHPGMR 180

Query: 181 GISGYEDVITSWEYVWANYEFPLEIQLKDVEVHARGEVGYVTCVELVKTKGSSWGGQFVT 240
           GISGY+DVITSWEYVWANYEFPLEIQLKD++VHARG+VGYVTCVELVKTKGSSWGGQFVT
Sbjct: 181 GISGYDDVITSWEYVWANYEFPLEIQLKDIQVHARGDVGYVTCVELVKTKGSSWGGQFVT 240

Query: 241 NVFERISGQWFICIHHASPIDL 246
           NVFERI+GQWFICIHHASPIDL
Sbjct: 241 NVFERINGQWFICIHHASPIDL 260

[Close]

BLAST of Sed0009323 vs. NCBI nr
Match: XP_023539336.1 (uncharacterized protein LOC111799999 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 394.4 bits (1012), Expect = 7.0e-106
Identity = 200/261 (76.63%), Postives = 216/261 (82.76%), Query Frame = 0


Query: 1   MALHTSTLCCNGFVTFVGNRMNVRCSQSFEAFHPGSSALPKFSYCLRRVGSGNGNGNFLQ 60
           MALHTS+LCCNG+VTF+ NR +VRCSQS E FH   SA PK  Y +  V +  G   FL 
Sbjct: 8   MALHTSSLCCNGYVTFISNRKSVRCSQSCEVFHHVPSARPK-QYDIGLVKASTGGCGFLF 67

Query: 61  GPDKR-LGD---------------SFGPCQLKAENSSGESVTVDAETLEQDLQNAIADED 120
               R LG                SF PCQLKAENSSGES+T+DAETL+QDLQNAIADED
Sbjct: 68  PSIPRCLGSTIGNFRPCKLSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQNAIADED 127

Query: 121 YARAAQIRDTLKALQEDSRTSVMAANAKFYEAFRTGDLAAMQTLWARGDSVCCVHPGMRG 180
           YARAA+IRDTLKALQEDS+ SV AANAKFYE+FR GDLAAMQTLWARGDSVCCVHPGMRG
Sbjct: 128 YARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRG 187

Query: 181 ISGYEDVITSWEYVWANYEFPLEIQLKDVEVHARGEVGYVTCVELVKTKGSSWGGQFVTN 240
           ISGY++VITSWEYVWANYEFPLEIQLKDVEVHARG+VGYVTCVELVKTKGSSWGGQFVTN
Sbjct: 188 ISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTN 247

Query: 241 VFERISGQWFICIHHASPIDL 246
           VFERI+GQWFICIHHASPIDL
Sbjct: 248 VFERINGQWFICIHHASPIDL 267

[Close]

BLAST of Sed0009323 vs. NCBI nr
Match: KAG6596375.1 (F-box protein SKIP8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 393.3 bits (1009), Expect = 1.6e-105
Identity = 198/261 (75.86%), Postives = 214/261 (81.99%), Query Frame = 0


Query: 1   MALHTSTLCCNGFVTFVGNRMNVRCSQSFEAFHPGSSALPKFSYCLRRVGSGNGN----- 60
           MALHTS+LCCNG+VTF+ NR +VRCSQS E FH    ALPK  Y +  V +  G      
Sbjct: 8   MALHTSSLCCNGYVTFISNRKSVRCSQSCEVFHHVPLALPK-QYDIGLVKASIGGYGFVS 67

Query: 61  -----------GNFLQGPDKRLGDSFGPCQLKAENSSGESVTVDAETLEQDLQNAIADED 120
                      GNF          SF PCQLKAENSSGES+T+DAETL+QDLQNAIADED
Sbjct: 68  PSIPRCLGSTIGNFRPCKQSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQNAIADED 127

Query: 121 YARAAQIRDTLKALQEDSRTSVMAANAKFYEAFRTGDLAAMQTLWARGDSVCCVHPGMRG 180
           YARAA+IRDTLKALQEDS+ SV AANAKFYE+FR GDLAAMQTLWARGDSVCCVHPGMRG
Sbjct: 128 YARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRG 187

Query: 181 ISGYEDVITSWEYVWANYEFPLEIQLKDVEVHARGEVGYVTCVELVKTKGSSWGGQFVTN 240
           ISGY++VITSWEYVWANYEFPLEIQLKDVEVHARG+VGYVTCVELVKTKGSSWGGQFVTN
Sbjct: 188 ISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTN 247

Query: 241 VFERISGQWFICIHHASPIDL 246
           VFERI+GQWFICIHHASPIDL
Sbjct: 248 VFERINGQWFICIHHASPIDL 267

[Close]

BLAST of Sed0009323 vs. ExPASy Swiss-Prot
Match: Q93YV9 (F-box protein SKIP8 OS=Arabidopsis thaliana OX=3702 GN=SKIP8 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.3e-11
Identity = 37/117 (31.62%), Postives = 59/117 (50.43%), Query Frame = 0


Query: 125 SVMAANAKFYEAFRTGDLAAMQTLWARGDSVCCVHPGMRGISGYEDVITSWEYVWANYEF 184
           ++++ N +F+   R   L AM  LW   D V C+H      SGY +VI SW+  + N+E 
Sbjct: 107 AIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCF-NWEQ 166

Query: 185 PLEIQLKDVEVHARGEVGYVTCVELVKTKGSSWGGQFVTNVFERISGQWFICIHHAS 242
             + Q+  V      ++ +VT    +   G   G   +TNVFE  +G+W +  HH+S
Sbjct: 167 GFDFQVHTVRTRILTDMAWVTMKAYLNVDG---GPFLITNVFEFHNGRWHMVHHHSS 219

[Close]

BLAST of Sed0009323 vs. ExPASy TrEMBL
Match: A0A6J1I6J4 (uncharacterized protein LOC111470086 OS=Cucurbita maxima OX=3661 GN=LOC111470086 PE=4 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 2.0e-106
Identity = 199/262 (75.95%), Postives = 216/262 (82.44%), Query Frame = 0


Query: 1   MALHTSTLCCNGFVTFVGNRMNVRCSQSFEAFHPGSSALPK-----------------FS 60
           MALHTS+LCCNG+VTF+ NR NVRCSQS E FH   SALPK                 F 
Sbjct: 1   MALHTSSLCCNGYVTFISNRKNVRCSQSCEVFHHVPSALPKQYDIGFVKESTGGYGFLFP 60

Query: 61  YCLRRVGSGNGNGNFLQGPDKRLGDSFGPCQLKAENSSGESVTVDAETLEQDLQNAIADE 120
              R +GS  GN    +   + L  SF PCQLKAENSSGES+T+DAETL+QDLQNAIADE
Sbjct: 61  SIPRCLGSTIGNFRPCKQSTRML--SFRPCQLKAENSSGESITLDAETLKQDLQNAIADE 120

Query: 121 DYARAAQIRDTLKALQEDSRTSVMAANAKFYEAFRTGDLAAMQTLWARGDSVCCVHPGMR 180
           DYARAA+IRDTLKALQEDS+ SV AANAKFYE+FR GDLAAMQTLWARGDSVCCVHPGMR
Sbjct: 121 DYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMR 180

Query: 181 GISGYEDVITSWEYVWANYEFPLEIQLKDVEVHARGEVGYVTCVELVKTKGSSWGGQFVT 240
           GI GY++V+TSWEYVWANYEFPLEIQLKDVEVHARG+VGYVTCVELVKTKGSSWGGQFVT
Sbjct: 181 GILGYDNVMTSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVT 240

Query: 241 NVFERISGQWFICIHHASPIDL 246
           NVFERI+GQWFICIHHASPIDL
Sbjct: 241 NVFERINGQWFICIHHASPIDL 260

[Close]

BLAST of Sed0009323 vs. ExPASy TrEMBL
Match: A0A0A0LA11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733200 PE=4 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 2.0e-106
Identity = 196/262 (74.81%), Postives = 215/262 (82.06%), Query Frame = 0


Query: 1   MALHTSTLCCNGFVTFVGNRMNVRCSQSFEAFHPGSSALPK-----------------FS 60
           MALHT  LCCN +VTF+ +R +VRCSQSF  FH   SA PK                   
Sbjct: 1   MALHTFNLCCNDYVTFISSRKSVRCSQSFSVFHHVPSAFPKQCEIRLVNSSSGGSGFLLP 60

Query: 61  YCLRRVGSGNGNGNFLQGPDKRLGDSFGPCQLKAENSSGESVTVDAETLEQDLQNAIADE 120
              R VGS NGN    +   ++L  SF PCQLKAENSSGES+T+DAETLEQDLQNAIADE
Sbjct: 61  SNFRHVGSRNGNFRPCKQASRKL--SFRPCQLKAENSSGESITLDAETLEQDLQNAIADE 120

Query: 121 DYARAAQIRDTLKALQEDSRTSVMAANAKFYEAFRTGDLAAMQTLWARGDSVCCVHPGMR 180
           DYARAA+IRDTLKALQEDS+T V+ ANAKFYE+FRTGDLAAMQTLWARG+SVCCVHPGMR
Sbjct: 121 DYARAAEIRDTLKALQEDSKTLVLTANAKFYESFRTGDLAAMQTLWARGNSVCCVHPGMR 180

Query: 181 GISGYEDVITSWEYVWANYEFPLEIQLKDVEVHARGEVGYVTCVELVKTKGSSWGGQFVT 240
           GISGY+DVITSWEYVWANYEFPLEIQLKD++VHARG+VGYVTCVELVKTKGSSWGGQFVT
Sbjct: 181 GISGYDDVITSWEYVWANYEFPLEIQLKDIQVHARGDVGYVTCVELVKTKGSSWGGQFVT 240

Query: 241 NVFERISGQWFICIHHASPIDL 246
           NVFERI+GQWFICIHHASPIDL
Sbjct: 241 NVFERINGQWFICIHHASPIDL 260

[Close]

BLAST of Sed0009323 vs. ExPASy TrEMBL
Match: A0A6J1FUV2 (uncharacterized protein LOC111447066 OS=Cucurbita moschata OX=3662 GN=LOC111447066 PE=4 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 2.9e-105
Identity = 197/261 (75.48%), Postives = 214/261 (81.99%), Query Frame = 0


Query: 1   MALHTSTLCCNGFVTFVGNRMNVRCSQSFEAFHPGSSALPKFSYCLRRVGSGNGN----- 60
           MALHTS+LCCNG+VTF+ NR +VRCSQS E F+   SALPK  Y +  V +  G      
Sbjct: 8   MALHTSSLCCNGYVTFISNRKSVRCSQSCEVFYHVPSALPK-QYDIGLVKASIGGYGFVS 67

Query: 61  -----------GNFLQGPDKRLGDSFGPCQLKAENSSGESVTVDAETLEQDLQNAIADED 120
                      GNF          SF PCQLKAENSSGES+T+DAE L+QDLQNAIADED
Sbjct: 68  PSIPRCLGSTIGNFRPCKQSSRMLSFRPCQLKAENSSGESITLDAEALKQDLQNAIADED 127

Query: 121 YARAAQIRDTLKALQEDSRTSVMAANAKFYEAFRTGDLAAMQTLWARGDSVCCVHPGMRG 180
           YARAA+IRDTLKALQEDS+ SV AANAKFYE+FR GDLAAMQTLWARGDSVCCVHPGMRG
Sbjct: 128 YARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRG 187

Query: 181 ISGYEDVITSWEYVWANYEFPLEIQLKDVEVHARGEVGYVTCVELVKTKGSSWGGQFVTN 240
           ISGY++VITSWEYVWANYEFPLEIQLKDVEVHARG+VGYVTCVELVKTKGSSWGGQFVTN
Sbjct: 188 ISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTN 247

Query: 241 VFERISGQWFICIHHASPIDL 246
           VFERI+GQWFICIHHASPIDL
Sbjct: 248 VFERINGQWFICIHHASPIDL 267

[Close]

BLAST of Sed0009323 vs. ExPASy TrEMBL
Match: A0A5A7TRW4 (F-box protein SKIP8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G004880 PE=4 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 1.4e-104
Identity = 198/262 (75.57%), Postives = 217/262 (82.82%), Query Frame = 0


Query: 1   MALHTSTLCCNGFVTFVGNRMNVRCSQSFEAFHPGSSALPKFSYC-LRRVGSGNGNGNFL 60
           MAL TS LCCN +VTF+ N  +VRCSQSF  FH   SALPK   C +R V S NG   FL
Sbjct: 1   MALRTSNLCCNDYVTFISNWKSVRCSQSFSVFHHVPSALPK--QCEIRLVKSSNGGSGFL 60

Query: 61  QGPD-----KRLGD-----------SFGPCQLKAENSSGESVTVDAETLEQDLQNAIADE 120
              +      R G+           SFGP QLKAENSSGES+T+DAETLEQDLQNAIA+E
Sbjct: 61  LPTNLRHVVSRDGNFRPCKQASRKLSFGPYQLKAENSSGESITLDAETLEQDLQNAIANE 120

Query: 121 DYARAAQIRDTLKALQEDSRTSVMAANAKFYEAFRTGDLAAMQTLWARGDSVCCVHPGMR 180
           DYARAA+IRDTLKALQEDS+T V+ ANAKFYE+FRTGDLAAMQTLWARG+SVCCVHPGMR
Sbjct: 121 DYARAAEIRDTLKALQEDSKTLVLTANAKFYESFRTGDLAAMQTLWARGNSVCCVHPGMR 180

Query: 181 GISGYEDVITSWEYVWANYEFPLEIQLKDVEVHARGEVGYVTCVELVKTKGSSWGGQFVT 240
           GISGY+DVITSWEYVWANYEFPLEIQLKD++VHARG+VGYVTCVELVKTKGSSWGGQFVT
Sbjct: 181 GISGYDDVITSWEYVWANYEFPLEIQLKDMQVHARGDVGYVTCVELVKTKGSSWGGQFVT 240

Query: 241 NVFERISGQWFICIHHASPIDL 246
           NVFERI+GQWFICIHHASPIDL
Sbjct: 241 NVFERINGQWFICIHHASPIDL 260

[Close]

BLAST of Sed0009323 vs. ExPASy TrEMBL
Match: A0A1S3B5S8 (uncharacterized protein LOC103486341 OS=Cucumis melo OX=3656 GN=LOC103486341 PE=4 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 1.4e-104
Identity = 198/262 (75.57%), Postives = 217/262 (82.82%), Query Frame = 0


Query: 1   MALHTSTLCCNGFVTFVGNRMNVRCSQSFEAFHPGSSALPKFSYC-LRRVGSGNGNGNFL 60
           MAL TS LCCN +VTF+ N  +VRCSQSF  FH   SALPK   C +R V S NG   FL
Sbjct: 1   MALRTSNLCCNDYVTFISNWKSVRCSQSFSVFHHVPSALPK--QCEIRLVKSSNGGSGFL 60

Query: 61  QGPD-----KRLGD-----------SFGPCQLKAENSSGESVTVDAETLEQDLQNAIADE 120
              +      R G+           SFGP QLKAENSSGES+T+DAETLEQDLQNAIA+E
Sbjct: 61  LPTNLRHVVSRDGNFRPCKQASRKLSFGPYQLKAENSSGESITLDAETLEQDLQNAIANE 120

Query: 121 DYARAAQIRDTLKALQEDSRTSVMAANAKFYEAFRTGDLAAMQTLWARGDSVCCVHPGMR 180
           DYARAA+IRDTLKALQEDS+T V+ ANAKFYE+FRTGDLAAMQTLWARG+SVCCVHPGMR
Sbjct: 121 DYARAAEIRDTLKALQEDSKTLVLTANAKFYESFRTGDLAAMQTLWARGNSVCCVHPGMR 180

Query: 181 GISGYEDVITSWEYVWANYEFPLEIQLKDVEVHARGEVGYVTCVELVKTKGSSWGGQFVT 240
           GISGY+DVITSWEYVWANYEFPLEIQLKD++VHARG+VGYVTCVELVKTKGSSWGGQFVT
Sbjct: 181 GISGYDDVITSWEYVWANYEFPLEIQLKDMQVHARGDVGYVTCVELVKTKGSSWGGQFVT 240

Query: 241 NVFERISGQWFICIHHASPIDL 246
           NVFERI+GQWFICIHHASPIDL
Sbjct: 241 NVFERINGQWFICIHHASPIDL 260

[Close]

BLAST of Sed0009323 vs. TAIR 10
Match: AT3G09250.1 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 251.5 bits (641), Expect = 6.8e-67
Identity = 132/254 (51.97%), Postives = 174/254 (68.50%), Query Frame = 0


Query: 1   MALHTSTLCCNGFVTFVGNRMNVRC--SQSFEAFHPGSSALPK-FSYCLRRVGSGNGNGN 60
           MALH S + C      V N + +      S    H     LPK +      V + N  G+
Sbjct: 1   MALHGSGVFCK-----VSNMVEITSPFGGSMRLLH-----LPKSYPIHCNMVSASNTFGS 60

Query: 61  -FLQGPDKRLGDSFGPCQLKAENSSG----ESVTVDAETLEQDLQNAIADEDYARAAQIR 120
             L+  +K       PC++K E ++     ES+++D  TL+QDL+ A+ +E+Y  AA+IR
Sbjct: 61  AHLKLQNKEPCSRLRPCRVKREENNQTADVESISMDENTLKQDLETAVQEENYVEAAKIR 120

Query: 121 DTLKALQEDSRTSVMAANAKFYEAFRTGDLAAMQTLWARGDSVCCVHPGMRGISGYEDVI 180
           D LK LQED++ SV++AN++FY++FR GDLAAMQ+LW++  + CCVHPG +GI+GY+ V+
Sbjct: 121 DKLKELQEDNKASVLSANSRFYQSFRNGDLAAMQSLWSKSGNPCCVHPGAKGITGYDYVM 180

Query: 181 TSWEYVWANYEFPLEIQLKDVEVHARGEVGYVTCVELVKTKG-SSWGGQFVTNVFERISG 240
            SWE VW NYEFPL I+LKDVEVH RGEVGYVTC+E VKTKG SSWG QFV+NVFERI G
Sbjct: 181 ESWELVWMNYEFPLLIELKDVEVHVRGEVGYVTCMEFVKTKGSSSWGAQFVSNVFERIDG 240

Query: 241 QWFICIHHASPIDL 246
           QWFICIHHASP+D+
Sbjct: 241 QWFICIHHASPVDI 244

[Close]

BLAST of Sed0009323 vs. TAIR 10
Match: AT3G09250.2 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 226.1 bits (575), Expect = 3.1e-59
Identity = 104/167 (62.28%), Postives = 136/167 (81.44%), Query Frame = 0


Query: 72  PCQLKAENSSG----ESVTVDAETLEQDLQNAIADEDYARAAQIRDTLKALQEDSRTSVM 131
           PC++K E ++     ES+++D  TL+QDL+ A+ +E+Y  AA+IRD LK LQED++ SV+
Sbjct: 52  PCRVKREENNQTADVESISMDENTLKQDLETAVQEENYVEAAKIRDKLKELQEDNKASVL 111

Query: 132 AANAKFYEAFRTGDLAAMQTLWARGDSVCCVHPGMRGISGYEDVITSWEYVWANYEFPLE 191
           +AN++FY++FR GDLAAMQ+LW++  + CCVHPG +GI+GY+ V+ SWE VW NYEFPL 
Sbjct: 112 SANSRFYQSFRNGDLAAMQSLWSKSGNPCCVHPGAKGITGYDYVMESWELVWMNYEFPLL 171

Query: 192 IQLKDVEVHARGEVGYVTCVELVKTKG-SSWGGQFVTNVFERISGQW 234
           I+LKDVEVH RGEVGYVTC+E VKTKG SSWG QFV+NVFERI GQW
Sbjct: 172 IELKDVEVHVRGEVGYVTCMEFVKTKGSSSWGAQFVSNVFERIDGQW 218

[Close]

BLAST of Sed0009323 vs. TAIR 10
Match: AT4G10925.1 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 70.9 bits (172), Expect = 1.7e-12
Identity = 37/117 (31.62%), Postives = 59/117 (50.43%), Query Frame = 0


Query: 125 SVMAANAKFYEAFRTGDLAAMQTLWARGDSVCCVHPGMRGISGYEDVITSWEYVWANYEF 184
           ++++ N +F+   R   L AM  LW   D V C+H      SGY +VI SW+  + N+E 
Sbjct: 107 AIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCF-NWEQ 166

Query: 185 PLEIQLKDVEVHARGEVGYVTCVELVKTKGSSWGGQFVTNVFERISGQWFICIHHAS 242
             + Q+  V      ++ +VT    +   G   G   +TNVFE  +G+W +  HH+S
Sbjct: 167 GFDFQVHTVRTRILTDMAWVTMKAYLNVDG---GPFLITNVFEFHNGRWHMVHHHSS 219

[Close]

BLAST of Sed0009323 vs. TAIR 10
Match: AT4G10925.2 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 70.9 bits (172), Expect = 1.7e-12
Identity = 37/117 (31.62%), Postives = 59/117 (50.43%), Query Frame = 0


Query: 125 SVMAANAKFYEAFRTGDLAAMQTLWARGDSVCCVHPGMRGISGYEDVITSWEYVWANYEF 184
           ++++ N +F+   R   L AM  LW   D V C+H      SGY +VI SW+  + N+E 
Sbjct: 107 AIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCF-NWEQ 166

Query: 185 PLEIQLKDVEVHARGEVGYVTCVELVKTKGSSWGGQFVTNVFERISGQWFICIHHAS 242
             + Q+  V      ++ +VT    +   G   G   +TNVFE  +G+W +  HH+S
Sbjct: 167 GFDFQVHTVRTRILTDMAWVTMKAYLNVDG---GPFLITNVFEFHNGRWHMVHHHSS 219

[Close]

BLAST of Sed0009323 vs. TAIR 10
Match: AT4G10925.3 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 70.9 bits (172), Expect = 1.7e-12
Identity = 37/117 (31.62%), Postives = 59/117 (50.43%), Query Frame = 0


Query: 125 SVMAANAKFYEAFRTGDLAAMQTLWARGDSVCCVHPGMRGISGYEDVITSWEYVWANYEF 184
           ++++ N +F+   R   L AM  LW   D V C+H      SGY +VI SW+  + N+E 
Sbjct: 107 AIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCF-NWEQ 166

Query: 185 PLEIQLKDVEVHARGEVGYVTCVELVKTKGSSWGGQFVTNVFERISGQWFICIHHAS 242
             + Q+  V      ++ +VT    +   G   G   +TNVFE  +G+W +  HH+S
Sbjct: 167 GFDFQVHTVRTRILTDMAWVTMKAYLNVDG---GPFLITNVFEFHNGRWHMVHHHSS 219

The following BLAST results are available for this feature:

BLAST of Sed0009323 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904182.1	3.1e-106	75.95	uncharacterized protein LOC120090530 [Benincasa hispida] >XP_038904693.1 unchara...	[more]
XP_022971333.1	4.1e-106	75.95	uncharacterized protein LOC111470086 [Cucurbita maxima]	[more]
XP_004137747.1	4.1e-106	74.81	uncharacterized protein LOC101219393 [Cucumis sativus] >KGN58815.1 hypothetical ...	[more]
XP_023539336.1	7.0e-106	76.63	uncharacterized protein LOC111799999 [Cucurbita pepo subsp. pepo]	[more]
KAG6596375.1	1.6e-105	75.86	F-box protein SKIP8, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Sed0009323 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93YV9	2.3e-11	31.62	F-box protein SKIP8 OS=Arabidopsis thaliana OX=3702 GN=SKIP8 PE=1 SV=1	[more]

BLAST of Sed0009323 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I6J4	2.0e-106	75.95	uncharacterized protein LOC111470086 OS=Cucurbita maxima OX=3661 GN=LOC111470086...	[more]
A0A0A0LA11	2.0e-106	74.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733200 PE=4 SV=1	[more]
A0A6J1FUV2	2.9e-105	75.48	uncharacterized protein LOC111447066 OS=Cucurbita moschata OX=3662 GN=LOC1114470...	[more]
A0A5A7TRW4	1.4e-104	75.57	F-box protein SKIP8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G...	[more]
A0A1S3B5S8	1.4e-104	75.57	uncharacterized protein LOC103486341 OS=Cucumis melo OX=3656 GN=LOC103486341 PE=...	[more]

BLAST of Sed0009323 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09250.1	6.8e-67	51.97	Nuclear transport factor 2 (NTF2) family protein	[more]
AT3G09250.2	3.1e-59	62.28	Nuclear transport factor 2 (NTF2) family protein	[more]
AT4G10925.1	1.7e-12	31.62	Nuclear transport factor 2 (NTF2) family protein	[more]
AT4G10925.2	1.7e-12	31.62	Nuclear transport factor 2 (NTF2) family protein	[more]
AT4G10925.3	1.7e-12	31.62	Nuclear transport factor 2 (NTF2) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037401	SnoaL-like domain	PFAM	PF13474	SnoaL_3	coord: 72..188 e-value: 2.7E-24 score: 85.9
IPR001943	UVR domain	PFAM	PF02151	UVR	coord: 36..66 e-value: 7.1E-7 score: 28.8
IPR001943	UVR domain	PROSITE	PS50151	UVR	coord: 32..67 score: 8.34461
None	No IPR available	GENE3D	3.10.450.50		coord: 61..190 e-value: 1.2E-41 score: 144.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	PANTHER	PTHR34957	NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN	coord: 18..190
IPR032710	NTF2-like domain superfamily	SUPERFAMILY	54427	NTF2-like	coord: 67..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0009323.1	Sed0009323.1	mRNA
Sed0009323.2	Sed0009323.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding