Sed0009267 (gene) Chayote v1

Overview


Name	Sed0009267
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG12: 7934935 .. 7936075 (+)
RNA-Seq Expression	Sed0009267
Synteny	Sed0009267

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATTGTTGGTGCTTTCAAAAGAAGAGGATGTTGGCCAAATCGATCCCGGAACATTTGTCTCGGTGGATTCGCAACTGTTCTTACGTGTTCTAATGGAGTTTGATGGTTACTTAGGTGATATCAAAATCAACTCTTTCTTTTTCCCATCACATTCTACTTGATTGAGAAAATAAACTTTAAGTTTTGCTGTTTTTTTTGTTCAGCTCGCATTACGATTACAAATTCACACGTCAAGTTCAACAAAGGAACAAAGGAGATTATTCTAATGAAAGAGGTACTGTCTTTTGATGGGTGGTTTTGGAATAGTACACTTAAGGTTAATGCTAAATTAAAAAAAAACTAGTAACAATTCAACTACTTGCACCTCAAATAAAGTGTTGATATATGCCTTGAACGGTTTAGTGTTCTACGATTAGTTAGTTTGGGGTTCCGAATTAAATCCTAGCTGTACTATAATGTTCATTTTGTATGGTATTCCTCTTTGCACTTGGACTAGTAACACAATGCTAGTAAAATACATAAATTTATGTGTGTTTTCTTCTCTTCTACGTTTCTTTATCCTTTGTTTCGATTATTGATTGTCGTTTTCATACATGTTATCATAAATCTCAGCTAAAGGCAACCATTGCTCTATACAAATCTTATACGTTTCAAAAGAAATTTACTTTCCACTATCGCTTCGTTCTAGGTTATTATCATGTCAATTTTCTGCTCGACAATCTAATTATGATCAATTTCCTCTCTAATGTGTTACATTCGAAAGAATAAAAGTATTTTTTGGTACAATGAGAAAAGTTCAGAAGTTTTTTTTTCCACATATAATCTAACTTAAAAGTAAACCATCCAAAATAAGACTAAGATTAAAATTTCAATAGGTAAAACATTTTGGATTATTTTGATATGATCGTGAGGATATTTGGCTATTGTTATATGCAGGAAGGACAATGCATATGTGAGGGCATAACAAAAGAAGAAGAAATTGAGGTCTTAATACCTCTCCAACCCACATCATTTTTTTATAATATGGTTTTACATTCACAAAGAGTATGGTTTTTCAAGACAGCTAACTCTTGTTGTATCATCATTATACCTCTTGGAATGTTTGTTCATTTTCAGATATGTTTTCCCTATATGTGA

mRNA sequence

ATGACATTGTTGGTGCTTTCAAAAGAAGAGGATGTTGGCCAAATCGATCCCGGAACATTTGTCTCGGTGGATTCGCAACTGTTCTTACGTGTTCTAATGGAGTTTGATGGTTACTTAGCTCGCATTACGATTACAAATTCACACGTCAAGTTCAACAAAGGAACAAAGGAGATTATTCTAATGAAAGAGGAAGGACAATGCATATGTGAGGGCATAACAAAAGAAGAAGAAATTGAGGTCTTAATACCTCTCCAACCCACATCATTTTTTTATAATATGGTTTTACATTCACAAAGAGTATGGTTTTTCAAGACAGCTAACTCTTGTTGTATCATCATTATACCTCTTGGAATGTTTGTTCATTTTCAGATATGTTTTCCCTATATGTGA

Coding sequence (CDS)

ATGACATTGTTGGTGCTTTCAAAAGAAGAGGATGTTGGCCAAATCGATCCCGGAACATTTGTCTCGGTGGATTCGCAACTGTTCTTACGTGTTCTAATGGAGTTTGATGGTTACTTAGCTCGCATTACGATTACAAATTCACACGTCAAGTTCAACAAAGGAACAAAGGAGATTATTCTAATGAAAGAGGAAGGACAATGCATATGTGAGGGCATAACAAAAGAAGAAGAAATTGAGGTCTTAATACCTCTCCAACCCACATCATTTTTTTATAATATGGTTTTACATTCACAAAGAGTATGGTTTTTCAAGACAGCTAACTCTTGTTGTATCATCATTATACCTCTTGGAATGTTTGTTCATTTTCAGATATGTTTTCCCTATATGTGA

Protein sequence

MTLLVLSKEEDVGQIDPGTFVSVDSQLFLRVLMEFDGYLARITITNSHVKFNKGTKEIILMKEEGQCICEGITKEEEIEVLIPLQPTSFFYNMVLHSQRVWFFKTANSCCIIIIPLGMFVHFQICFPYM

Homology

[Close]

BLAST of Sed0009267 vs. NCBI nr
Match: XP_022959411.1 (uncharacterized protein LOC111460395 [Cucurbita moschata])

HSP 1 Score: 119.4 bits (298), Expect = 2.3e-23
Identity = 54/119 (45.38%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 9   EEDVGQIDPGTFVSVDSQLFLRVLMEFDGYLARITITNSHVKFNKGTKEIILMKEEGQCI 68
           +EDVG+I+  TFVS++S++F  ++ EF GY+  +  T S V F+   KE++L K +G+CI
Sbjct: 44  KEDVGRINLKTFVSIESEVFRHMVAEFRGYIVCVLPTTSSVMFSIEVKELVLDKAKGECI 103

Query: 69  CEGITKEEEIEVLIPLQPTSFFYNMVLHSQRVWFFKTANSCCIIIIPLGMFVHFQICFP 128
            EG+T+E + E LIPL P   FYNM  HS+R+W FKT +   +II P+G++  + I FP
Sbjct: 104 IEGVTEEVQTEFLIPLYPWHIFYNMTFHSKRIWLFKTFDKSTLIIAPIGLYAQYSIFFP 162

[Close]

BLAST of Sed0009267 vs. NCBI nr
Match: XP_031737295.1 (uncharacterized protein LOC101209763 [Cucumis sativus] >KAE8651789.1 hypothetical protein Csa_005953 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 5.1e-23
Identity = 57/119 (47.90%), Postives = 76/119 (63.87%), Query Frame = 0


Query: 10  EDVGQIDPGTFVSVDSQLFLRVLMEFDGYLARITITNSHVKFNKGTKEIILMKEEGQCIC 69
           ED G +D   FVS+DS  F  ++ E   Y+ R+T T+SHV+F    KEII  KEEG+CI 
Sbjct: 126 EDFGNVDFEIFVSIDSLQFRHIIQECRDYMVRVTPTHSHVRFCNEVKEIIFKKEEGECII 185

Query: 70  EGITKEEEIEVLIPLQPTSFFYNMVLHSQRVWFFKTANSC-CIIIIPLGMFVHFQICFP 128
           EG+ K   +E LIP+ PT  +YN+   +QRVW FK+A+ C   II P+G+F  F I FP
Sbjct: 186 EGVGKGPAVEFLIPVYPTHVYYNITFQAQRVWLFKSADKCGTFIIAPVGLFAQFAIYFP 244

[Close]

BLAST of Sed0009267 vs. NCBI nr
Match: XP_023547435.1 (uncharacterized protein LOC111806376 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 118.2 bits (295), Expect = 5.1e-23
Identity = 54/119 (45.38%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 9   EEDVGQIDPGTFVSVDSQLFLRVLMEFDGYLARITITNSHVKFNKGTKEIILMKEEGQCI 68
           +EDVG+I+  TFVS++S++F  ++ EF GY+  +  T S V F+   KE++L K +G+CI
Sbjct: 44  KEDVGRINLKTFVSIESEVFRHMVAEFRGYIVCVLPTPSSVMFSIEVKELVLDKAKGECI 103

Query: 69  CEGITKEEEIEVLIPLQPTSFFYNMVLHSQRVWFFKTANSCCIIIIPLGMFVHFQICFP 128
            EG+T+E + E LIPL P   FYNM  HS+R+W FKT +   +II P+G++  + I FP
Sbjct: 104 IEGVTEEVQTEFLIPLYPWHIFYNMTFHSKRIWLFKTFDKSTLIIAPVGLYAQYSIFFP 162

[Close]

BLAST of Sed0009267 vs. NCBI nr
Match: XP_023006673.1 (uncharacterized protein LOC111499328 [Cucurbita maxima])

HSP 1 Score: 116.7 bits (291), Expect = 1.5e-22
Identity = 54/119 (45.38%), Postives = 80/119 (67.23%), Query Frame = 0


Query: 9   EEDVGQIDPGTFVSVDSQLFLRVLMEFDGYLARITITNSHVKFNKGTKEIILMKEEGQCI 68
           +EDVG+I+  TFVS++S++F  ++ EF GY+  +  T S V F+   KE+IL K +G+CI
Sbjct: 44  KEDVGRINLETFVSIESEVFRHMVAEFRGYIVCVLPTPSSVMFSIEVKELILDKAKGECI 103

Query: 69  CEGITKEEEIEVLIPLQPTSFFYNMVLHSQRVWFFKTANSCCIIIIPLGMFVHFQICFP 128
            EG+ +E + E LIPL P   FYNM  HS+R+W FKT +   +II P+G++  + I FP
Sbjct: 104 IEGVAEEVQTEFLIPLYPWHIFYNMTFHSKRIWLFKTFDKSTLIIAPVGLYAQYSIFFP 162

[Close]

BLAST of Sed0009267 vs. NCBI nr
Match: KAA0033214.1 (uncharacterized protein E6C27_scaffold845G00030 [Cucumis melo var. makuwa] >TYK12422.1 uncharacterized protein E5676_scaffold1591G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 2.1e-21
Identity = 54/119 (45.38%), Postives = 73/119 (61.34%), Query Frame = 0


Query: 10  EDVGQIDPGTFVSVDSQLFLRVLMEFDGYLARITITNSHVKFNKGTKEIILMKEEGQCIC 69
           ED G +D   FVS+DS  F  ++ E   Y+ R+T T+SHV+F    KE I  KE G+CI 
Sbjct: 126 EDFGNVDFEIFVSIDSLQFRHIIQECRDYMVRVTPTHSHVRFCNEVKEFIFAKEAGECII 185

Query: 70  EGITKEEEIEVLIPLQPTSFFYNMVLHSQRVWFFKTANSC-CIIIIPLGMFVHFQICFP 128
           EG+ K   +E LIP+ PT  +YN+   +QRVW FK+ + C   II P+G+F  F I FP
Sbjct: 186 EGVGKGPAVEFLIPVYPTHVYYNITFQAQRVWLFKSVDKCGTFIIAPVGLFAQFAIYFP 244

[Close]

BLAST of Sed0009267 vs. ExPASy TrEMBL
Match: A0A6J1H4S7 (uncharacterized protein LOC111460395 OS=Cucurbita moschata OX=3662 GN=LOC111460395 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.1e-23
Identity = 54/119 (45.38%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 9   EEDVGQIDPGTFVSVDSQLFLRVLMEFDGYLARITITNSHVKFNKGTKEIILMKEEGQCI 68
           +EDVG+I+  TFVS++S++F  ++ EF GY+  +  T S V F+   KE++L K +G+CI
Sbjct: 44  KEDVGRINLKTFVSIESEVFRHMVAEFRGYIVCVLPTTSSVMFSIEVKELVLDKAKGECI 103

Query: 69  CEGITKEEEIEVLIPLQPTSFFYNMVLHSQRVWFFKTANSCCIIIIPLGMFVHFQICFP 128
            EG+T+E + E LIPL P   FYNM  HS+R+W FKT +   +II P+G++  + I FP
Sbjct: 104 IEGVTEEVQTEFLIPLYPWHIFYNMTFHSKRIWLFKTFDKSTLIIAPIGLYAQYSIFFP 162

[Close]

BLAST of Sed0009267 vs. ExPASy TrEMBL
Match: A0A0A0LLD1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G154090 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.5e-23
Identity = 57/119 (47.90%), Postives = 76/119 (63.87%), Query Frame = 0


Query: 10  EDVGQIDPGTFVSVDSQLFLRVLMEFDGYLARITITNSHVKFNKGTKEIILMKEEGQCIC 69
           ED G +D   FVS+DS  F  ++ E   Y+ R+T T+SHV+F    KEII  KEEG+CI 
Sbjct: 37  EDFGNVDFEIFVSIDSLQFRHIIQECRDYMVRVTPTHSHVRFCNEVKEIIFKKEEGECII 96

Query: 70  EGITKEEEIEVLIPLQPTSFFYNMVLHSQRVWFFKTANSC-CIIIIPLGMFVHFQICFP 128
           EG+ K   +E LIP+ PT  +YN+   +QRVW FK+A+ C   II P+G+F  F I FP
Sbjct: 97  EGVGKGPAVEFLIPVYPTHVYYNITFQAQRVWLFKSADKCGTFIIAPVGLFAQFAIYFP 155

[Close]

BLAST of Sed0009267 vs. ExPASy TrEMBL
Match: A0A6J1L5L4 (uncharacterized protein LOC111499328 OS=Cucurbita maxima OX=3661 GN=LOC111499328 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 7.2e-23
Identity = 54/119 (45.38%), Postives = 80/119 (67.23%), Query Frame = 0


Query: 9   EEDVGQIDPGTFVSVDSQLFLRVLMEFDGYLARITITNSHVKFNKGTKEIILMKEEGQCI 68
           +EDVG+I+  TFVS++S++F  ++ EF GY+  +  T S V F+   KE+IL K +G+CI
Sbjct: 44  KEDVGRINLETFVSIESEVFRHMVAEFRGYIVCVLPTPSSVMFSIEVKELILDKAKGECI 103

Query: 69  CEGITKEEEIEVLIPLQPTSFFYNMVLHSQRVWFFKTANSCCIIIIPLGMFVHFQICFP 128
            EG+ +E + E LIPL P   FYNM  HS+R+W FKT +   +II P+G++  + I FP
Sbjct: 104 IEGVAEEVQTEFLIPLYPWHIFYNMTFHSKRIWLFKTFDKSTLIIAPVGLYAQYSIFFP 162

[Close]

BLAST of Sed0009267 vs. ExPASy TrEMBL
Match: A0A5D3CM59 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1591G00030 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.0e-21
Identity = 54/119 (45.38%), Postives = 73/119 (61.34%), Query Frame = 0


Query: 10  EDVGQIDPGTFVSVDSQLFLRVLMEFDGYLARITITNSHVKFNKGTKEIILMKEEGQCIC 69
           ED G +D   FVS+DS  F  ++ E   Y+ R+T T+SHV+F    KE I  KE G+CI 
Sbjct: 126 EDFGNVDFEIFVSIDSLQFRHIIQECRDYMVRVTPTHSHVRFCNEVKEFIFAKEAGECII 185

Query: 70  EGITKEEEIEVLIPLQPTSFFYNMVLHSQRVWFFKTANSC-CIIIIPLGMFVHFQICFP 128
           EG+ K   +E LIP+ PT  +YN+   +QRVW FK+ + C   II P+G+F  F I FP
Sbjct: 186 EGVGKGPAVEFLIPVYPTHVYYNITFQAQRVWLFKSVDKCGTFIIAPVGLFAQFAIYFP 244

[Close]

BLAST of Sed0009267 vs. ExPASy TrEMBL
Match: A0A1S3C5S9 (uncharacterized protein LOC103496987 OS=Cucumis melo OX=3656 GN=LOC103496987 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.0e-21
Identity = 54/119 (45.38%), Postives = 73/119 (61.34%), Query Frame = 0


Query: 10  EDVGQIDPGTFVSVDSQLFLRVLMEFDGYLARITITNSHVKFNKGTKEIILMKEEGQCIC 69
           ED G +D   FVS+DS  F  ++ E   Y+ R+T T+SHV+F    KE I  KE G+CI 
Sbjct: 45  EDFGNVDFEIFVSIDSLQFRHIIQECRDYMVRVTPTHSHVRFCNEVKEFIFAKEAGECII 104

Query: 70  EGITKEEEIEVLIPLQPTSFFYNMVLHSQRVWFFKTANSC-CIIIIPLGMFVHFQICFP 128
           EG+ K   +E LIP+ PT  +YN+   +QRVW FK+ + C   II P+G+F  F I FP
Sbjct: 105 EGVGKGPAVEFLIPVYPTHVYYNITFQAQRVWLFKSVDKCGTFIIAPVGLFAQFAIYFP 163

The following BLAST results are available for this feature:

BLAST of Sed0009267 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959411.1	2.3e-23	45.38	uncharacterized protein LOC111460395 [Cucurbita moschata]	[more]
XP_031737295.1	5.1e-23	47.90	uncharacterized protein LOC101209763 [Cucumis sativus] >KAE8651789.1 hypothetica...	[more]
XP_023547435.1	5.1e-23	45.38	uncharacterized protein LOC111806376 [Cucurbita pepo subsp. pepo]	[more]
XP_023006673.1	1.5e-22	45.38	uncharacterized protein LOC111499328 [Cucurbita maxima]	[more]
KAA0033214.1	2.1e-21	45.38	uncharacterized protein E6C27_scaffold845G00030 [Cucumis melo var. makuwa] >TYK1...	[more]

BLAST of Sed0009267 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0009267 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H4S7	1.1e-23	45.38	uncharacterized protein LOC111460395 OS=Cucurbita moschata OX=3662 GN=LOC1114603...	[more]
A0A0A0LLD1	2.5e-23	47.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G154090 PE=4 SV=1	[more]
A0A6J1L5L4	7.2e-23	45.38	uncharacterized protein LOC111499328 OS=Cucurbita maxima OX=3661 GN=LOC111499328...	[more]
A0A5D3CM59	1.0e-21	45.38	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C5S9	1.0e-21	45.38	uncharacterized protein LOC103496987 OS=Cucumis melo OX=3656 GN=LOC103496987 PE=...	[more]

BLAST of Sed0009267 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0009267.1	Sed0009267.1	mRNA