Sed0009205 (gene) Chayote v1

Overview


Name	Sed0009205
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Coiled-coil domain-containing protein 9-like
Location	LG08: 5702452 .. 5703523 (-)
RNA-Seq Expression	Sed0009205
Synteny	Sed0009205

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCCCGATGAAGAGAAGCTTACTCGTCGCAATCCTCTCGATTTCCCAATTGTAACGTTCATTTTTATCTTACTTGGCTGTTTCCTGTTTCTTGGCTTGTATTTTTCATGGGATTTTAGTGTTTTTGCTCCCAGTTGACTTGTTGCTTTGCCAGTGTATTGTTTGATTAGGTAGGGTGGATAATGGGAGCATTTCTTAGGATTTGATTGGTTTATTGTTCAGTTTTAGCTTTGAAGGTTGTTTAAAAGGCTTATCCATGAGTTGTCTTGTTGGGTTGTTCTTTGTTTTGGTTACTTGTATATAAAATGGGCTATATTTGTCTTCAGACAAGGGGCATCGATCATCATAATGTTTGCTTATTGCTGCTGTCACAGATTTTGTAAGAATGGGCCGTAGTTGTGTGGATTCATCATGTCTGTGATAGTTCTTATCGTTTTCATTCCTGCACTTGGTTGATGCCACTGTAGTTGTTACTTGTTAATGAGATTGAAAGAAGATTTTGCAAACCCTCACGAATGTCGCTTAATTTAATAGTTTAGTTCCTTGCCTTTTCAGTTTTGGGGGTGTGGGGTGGGGATTATAGTTGCTGGCTTGACAGGCAGGATATCTGTTTATTTAGTTTGTTTCATGTACTGTTACCGGTTTTCTACTTCTAATGCTCCTGGAAATAAATATGAAACCGTTACGTTCATAGATTATTCATGAATAACCTATTAGGGTGCATGTTTGGTGGTCCTTTCAGTTTCTAATATGAAAATTTTGATGTTCTTACCTGACAAACTAAGCTTAGTTAGTAAGAAAATTTATGTATGGTTTATGAAGTGCCTGAAGAGATTATAGCTGCTGTTCTTTGGTTGAATGCTTCTTGACTACTTGGTTGCAGGAGTGGGAGAGGCCTAAGCCAAGTCGTAGACCAGATATCTTTCCTCAATTTAGCCCCATGAAAACACCGTTGCCACCACCATTACCATGTGATCCCCCCGAGGAAGACGAGGAGGAGGAGGTAGAGAAGAAAGAGGAAGAAGAGGAAAATCCCGACAAGGAAACCCCAGATGAGCCTGAGAAGTAG

mRNA sequence

ATGGCCCCCGATGAAGAGAAGCTTACTCGTCGCAATCCTCTCGATTTCCCAATTGAGTGGGAGAGGCCTAAGCCAAGTCGTAGACCAGATATCTTTCCTCAATTTAGCCCCATGAAAACACCGTTGCCACCACCATTACCATGTGATCCCCCCGAGGAAGACGAGGAGGAGGAGGTAGAGAAGAAAGAGGAAGAAGAGGAAAATCCCGACAAGGAAACCCCAGATGAGCCTGAGAAGTAG

Coding sequence (CDS)

ATGGCCCCCGATGAAGAGAAGCTTACTCGTCGCAATCCTCTCGATTTCCCAATTGAGTGGGAGAGGCCTAAGCCAAGTCGTAGACCAGATATCTTTCCTCAATTTAGCCCCATGAAAACACCGTTGCCACCACCATTACCATGTGATCCCCCCGAGGAAGACGAGGAGGAGGAGGTAGAGAAGAAAGAGGAAGAAGAGGAAAATCCCGACAAGGAAACCCCAGATGAGCCTGAGAAGTAG

Protein sequence

MAPDEEKLTRRNPLDFPIEWERPKPSRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEEVEKKEEEEENPDKETPDEPEK

Homology

[Close]

BLAST of Sed0009205 vs. NCBI nr
Match: XP_022145037.1 (uncharacterized protein LOC111014560 [Momordica charantia])

HSP 1 Score: 137.9 bits (346), Expect = 3.8e-29
Identity = 75/78 (96.15%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1   MAPDEEKLTRRNPLDFPIEWERPKPSRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEEVE 60
           MAPDEEKLTRRNPLDFPIEWERPKP RRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEE E
Sbjct: 64  MAPDEEKLTRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEE-E 123

Query: 61  KKEEEEENPDKETPDEPE 79
           KKEEEEENPDKE PDEPE
Sbjct: 124 KKEEEEENPDKENPDEPE 140

[Close]

BLAST of Sed0009205 vs. NCBI nr
Match: XP_038879472.1 (uncharacterized protein LOC120071334 [Benincasa hispida])

HSP 1 Score: 137.9 bits (346), Expect = 3.8e-29
Identity = 75/79 (94.94%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 1   MAPDEEKLTRRNPLDFPIEWERPKPSRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEEVE 60
           MAP+EEKLTRRNPLDFPIEWERPKP RRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEE E
Sbjct: 64  MAPEEEKLTRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEE-E 123

Query: 61  KKEEEEENPDKETPDEPEK 80
           KKEEEEENPDKE PDEPEK
Sbjct: 124 KKEEEEENPDKENPDEPEK 141

[Close]

BLAST of Sed0009205 vs. NCBI nr
Match: KAG6589907.1 (hypothetical protein SDJN03_15330, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137.1 bits (344), Expect = 6.5e-29
Identity = 74/79 (93.67%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 1   MAPDEEKLTRRNPLDFPIEWERPKPSRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEEVE 60
           MAP+EEK+TRRNPLDFPIEWERPKP RRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEE E
Sbjct: 65  MAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEE-E 124

Query: 61  KKEEEEENPDKETPDEPEK 80
           KKEEEEENPDKE PDEPEK
Sbjct: 125 KKEEEEENPDKENPDEPEK 142

[Close]

BLAST of Sed0009205 vs. NCBI nr
Match: XP_022960823.1 (uncharacterized protein LOC111461515 isoform X1 [Cucurbita moschata])

HSP 1 Score: 137.1 bits (344), Expect = 6.5e-29
Identity = 74/79 (93.67%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 1   MAPDEEKLTRRNPLDFPIEWERPKPSRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEEVE 60
           MAP+EEK+TRRNPLDFPIEWERPKP RRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEE E
Sbjct: 65  MAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEE-E 124

Query: 61  KKEEEEENPDKETPDEPEK 80
           KKEEEEENPDKE PDEPEK
Sbjct: 125 KKEEEEENPDKENPDEPEK 142

[Close]

BLAST of Sed0009205 vs. NCBI nr
Match: XP_023516602.1 (uncharacterized protein LOC111780429 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023516603.1 uncharacterized protein LOC111780429 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023516604.1 uncharacterized protein LOC111780429 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 137.1 bits (344), Expect = 6.5e-29
Identity = 74/79 (93.67%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 1   MAPDEEKLTRRNPLDFPIEWERPKPSRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEEVE 60
           MAP+EEK+TRRNPLDFPIEWERPKP RRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEE E
Sbjct: 65  MAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEE-E 124

Query: 61  KKEEEEENPDKETPDEPEK 80
           KKEEEEENPDKE PDEPEK
Sbjct: 125 KKEEEEENPDKENPDEPEK 142

[Close]

BLAST of Sed0009205 vs. ExPASy TrEMBL
Match: A0A6J1CVD6 (uncharacterized protein LOC111014560 OS=Momordica charantia OX=3673 GN=LOC111014560 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.8e-29
Identity = 75/78 (96.15%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1   MAPDEEKLTRRNPLDFPIEWERPKPSRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEEVE 60
           MAPDEEKLTRRNPLDFPIEWERPKP RRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEE E
Sbjct: 64  MAPDEEKLTRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEE-E 123

Query: 61  KKEEEEENPDKETPDEPE 79
           KKEEEEENPDKE PDEPE
Sbjct: 124 KKEEEEENPDKENPDEPE 140

[Close]

BLAST of Sed0009205 vs. ExPASy TrEMBL
Match: A0A6J1JI28 (uncharacterized protein LOC111485300 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485300 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.1e-29
Identity = 74/79 (93.67%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 1   MAPDEEKLTRRNPLDFPIEWERPKPSRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEEVE 60
           MAP+EEK+TRRNPLDFPIEWERPKP RRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEE E
Sbjct: 64  MAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEE-E 123

Query: 61  KKEEEEENPDKETPDEPEK 80
           KKEEEEENPDKE PDEPEK
Sbjct: 124 KKEEEEENPDKENPDEPEK 141

[Close]

BLAST of Sed0009205 vs. ExPASy TrEMBL
Match: A0A6J1HA36 (uncharacterized protein LOC111461515 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461515 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.1e-29
Identity = 74/79 (93.67%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 1   MAPDEEKLTRRNPLDFPIEWERPKPSRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEEVE 60
           MAP+EEK+TRRNPLDFPIEWERPKP RRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEE E
Sbjct: 65  MAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEE-E 124

Query: 61  KKEEEEENPDKETPDEPEK 80
           KKEEEEENPDKE PDEPEK
Sbjct: 125 KKEEEEENPDKENPDEPEK 142

[Close]

BLAST of Sed0009205 vs. ExPASy TrEMBL
Match: A0A6J1HQ01 (uncharacterized protein LOC111465629 OS=Cucurbita maxima OX=3661 GN=LOC111465629 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.1e-29
Identity = 74/79 (93.67%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 1   MAPDEEKLTRRNPLDFPIEWERPKPSRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEEVE 60
           MAP+EEKLTRRNPLDFPIEW+RPKP RRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEE E
Sbjct: 64  MAPEEEKLTRRNPLDFPIEWDRPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEE-E 123

Query: 61  KKEEEEENPDKETPDEPEK 80
           KKEEEEENPDKE PDEPEK
Sbjct: 124 KKEEEEENPDKENPDEPEK 141

[Close]

BLAST of Sed0009205 vs. ExPASy TrEMBL
Match: A0A6J1F0T5 (uncharacterized protein LOC111441100 OS=Cucurbita moschata OX=3662 GN=LOC111441100 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.1e-29
Identity = 74/79 (93.67%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 1   MAPDEEKLTRRNPLDFPIEWERPKPSRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEEVE 60
           MAP+EEKLTRRNPLDFPIEW+RPKP RRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEE E
Sbjct: 64  MAPEEEKLTRRNPLDFPIEWDRPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEE-E 123

Query: 61  KKEEEEENPDKETPDEPEK 80
           KKEEEEENPDKE PDEPEK
Sbjct: 124 KKEEEEENPDKENPDEPEK 141

[Close]

BLAST of Sed0009205 vs. TAIR 10
Match: AT2G17240.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24506.1); Has 2795 Blast hits to 943 proteins in 155 species: Archae - 0; Bacteria - 388; Metazoa - 809; Fungi - 72; Plants - 153; Viruses - 54; Other Eukaryotes - 1319 (source: NCBI BLink). )

HSP 1 Score: 123.6 bits (309), Expect = 6.9e-29
Identity = 68/79 (86.08%), Postives = 74/79 (93.67%), Query Frame = 0


Query: 1   MAPDEEKLTRRNPLDFPIEWERPKPSRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEEVE 60
           MAP+EEKLTRRNPLDFPIEWERPKP RRPDIFP+FSPMKTPLPPP+P DPPEEDEEEE E
Sbjct: 61  MAPEEEKLTRRNPLDFPIEWERPKPGRRPDIFPKFSPMKTPLPPPMPYDPPEEDEEEE-E 120

Query: 61  KKEEEEENPDKETPDEPEK 80
           KKEEEEENPD+E  ++PEK
Sbjct: 121 KKEEEEENPDQEEEEQPEK 138

[Close]

BLAST of Sed0009205 vs. TAIR 10
Match: AT3G24506.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17240.1); Has 4864 Blast hits to 709 proteins in 125 species: Archae - 0; Bacteria - 592; Metazoa - 786; Fungi - 33; Plants - 410; Viruses - 61; Other Eukaryotes - 2982 (source: NCBI BLink). )

HSP 1 Score: 115.2 bits (287), Expect = 2.5e-26
Identity = 60/78 (76.92%), Postives = 72/78 (92.31%), Query Frame = 0


Query: 1   MAPDEEKLTRRNPLDFPIEWERPKPSRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEEVE 60
           MAP+EEKLTRRNPLDFPIEWERPKP RRPDIFP+FSPMK+PLPPP+P DPPEE+EEEE +
Sbjct: 69  MAPEEEKLTRRNPLDFPIEWERPKPGRRPDIFPKFSPMKSPLPPPMPYDPPEEEEEEEEK 128

Query: 61  KKEEEEENPDKETPDEPE 79
           K+EE E++P+KE  D+P+
Sbjct: 129 KEEETEDDPEKEDEDQPD 146

The following BLAST results are available for this feature:

BLAST of Sed0009205 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145037.1	3.8e-29	96.15	uncharacterized protein LOC111014560 [Momordica charantia]	[more]
XP_038879472.1	3.8e-29	94.94	uncharacterized protein LOC120071334 [Benincasa hispida]	[more]
KAG6589907.1	6.5e-29	93.67	hypothetical protein SDJN03_15330, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022960823.1	6.5e-29	93.67	uncharacterized protein LOC111461515 isoform X1 [Cucurbita moschata]	[more]
XP_023516602.1	6.5e-29	93.67	uncharacterized protein LOC111780429 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]

BLAST of Sed0009205 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0009205 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CVD6	1.8e-29	96.15	uncharacterized protein LOC111014560 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1JI28	3.1e-29	93.67	uncharacterized protein LOC111485300 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1HA36	3.1e-29	93.67	uncharacterized protein LOC111461515 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HQ01	4.1e-29	93.67	uncharacterized protein LOC111465629 OS=Cucurbita maxima OX=3661 GN=LOC111465629...	[more]
A0A6J1F0T5	4.1e-29	93.67	uncharacterized protein LOC111441100 OS=Cucurbita moschata OX=3662 GN=LOC1114411...	[more]

BLAST of Sed0009205 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G17240.1	6.9e-29	86.08	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G24506.1	2.5e-26	76.92	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..73
None	No IPR available	PANTHER	PTHR35713	ARGININE/SERINE-RICH-LIKE SPLICING FACTOR	coord: 1..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0009205.1	Sed0009205.1	mRNA