Sed0008950 (gene) Chayote v1

Overview


Name	Sed0008950
Type	gene
Organism	Sechium edule (Chayote v1)
Description	(-)-germacrene D synthase-like
Location	LG11: 33020327 .. 33021047 (+)
RNA-Seq Expression	Sed0008950
Synteny	Sed0008950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAAACAGGAAGAAGATGATGGGGTAAGAAAACAACTTGAAGAATTGAAAGAAGAAGTTAAAAACATGCTTGTAACAGCTCAAAAGTGTTCGGAAAAATTAAGATTGATTGATATAATCCAACGCTTAGGTTTGTCATACCACTTTGAAGGGGAAATTAATGAAATTCTAGACCACATCCACAATCCTTGCAATATTGACCTTGATGAGGATCTTTACGTGATGGCTCTTAGATTTCGATTGCTAAGACAACAAGGTTATTTTGTTTCGACAGGTCAGTCTTTTAAGTGATATTTTTAAATATAAGTTTAATCTTTTAAGTTTATAACTTAAACTATACTATATTTCAACATAAATATTTAATAAGTTTACCGATGAATTGGGAGCGTTCAAAGAATCGATTGTAAAAGATGAAAGGGGTTTACTAAGTTTGTATGAGGCATCACATTTAAGAATGAATGGAGAAAATATTTTGGATGAAGCCTTGGCATTTACGACGGCTCGTCTTCAAGAGATGGCCATGGATTCAAGCTCTTGTTTTGGAGAAGAAGTTAAATATGCTTTGAAATGGCCAATCTTTAAAGCATTTCACAGGCTTATGAACAAGCACCATATCTCTCTCTACAACAATGATCCATTACATAACAATGATTTGCTCACTTTTGCCAAGTTGGATTTACAACCTTTTGCAAAAACTTTATCAGAAAGAAGTGGCTGA

mRNA sequence

ATGAAAAAACAGGAAGAAGATGATGGGGTAAGAAAACAACTTGAAGAATTGAAAGAAGAAGTTAAAAACATGCTTGTAACAGCTCAAAAGTGTTCGGAAAAATTAAGATTGATTGATATAATCCAACGCTTAGGTTTGTCATACCACTTTGAAGGGGAAATTAATGAAATTCTAGACCACATCCACAATCCTTGCAATATTGACCTTGATGAGGATCTTTACGTGATGGCTCTTAGATTTCGATTGCTAAGACAACAAGGTTATTTTTTTACCGATGAATTGGGAGCGTTCAAAGAATCGATTGTAAAAGATGAAAGGGGTTTACTAAGTTTGTATGAGGCATCACATTTAAGAATGAATGGAGAAAATATTTTGGATGAAGCCTTGGCATTTACGACGGCTCGTCTTCAAGAGATGGCCATGGATTCAAGCTCTTGTTTTGGAGAAGAAGTTAAATATGCTTTGAAATGGCCAATCTTTAAAGCATTTCACAGGCTTATGAACAAGCACCATATCTCTCTCTACAACAATGATCCATTACATAACAATGATTTGCTCACTTTTGCCAAGTTGGATTTACAACCTTTTGCAAAAACTTTATCAGAAAGAAGTGGCTGA

Coding sequence (CDS)

ATGAAAAAACAGGAAGAAGATGATGGGGTAAGAAAACAACTTGAAGAATTGAAAGAAGAAGTTAAAAACATGCTTGTAACAGCTCAAAAGTGTTCGGAAAAATTAAGATTGATTGATATAATCCAACGCTTAGGTTTGTCATACCACTTTGAAGGGGAAATTAATGAAATTCTAGACCACATCCACAATCCTTGCAATATTGACCTTGATGAGGATCTTTACGTGATGGCTCTTAGATTTCGATTGCTAAGACAACAAGGTTATTTTTTTACCGATGAATTGGGAGCGTTCAAAGAATCGATTGTAAAAGATGAAAGGGGTTTACTAAGTTTGTATGAGGCATCACATTTAAGAATGAATGGAGAAAATATTTTGGATGAAGCCTTGGCATTTACGACGGCTCGTCTTCAAGAGATGGCCATGGATTCAAGCTCTTGTTTTGGAGAAGAAGTTAAATATGCTTTGAAATGGCCAATCTTTAAAGCATTTCACAGGCTTATGAACAAGCACCATATCTCTCTCTACAACAATGATCCATTACATAACAATGATTTGCTCACTTTTGCCAAGTTGGATTTACAACCTTTTGCAAAAACTTTATCAGAAAGAAGTGGCTGA

Protein sequence

MKKQEEDDGVRKQLEELKEEVKNMLVTAQKCSEKLRLIDIIQRLGLSYHFEGEINEILDHIHNPCNIDLDEDLYVMALRFRLLRQQGYFFTDELGAFKESIVKDERGLLSLYEASHLRMNGENILDEALAFTTARLQEMAMDSSSCFGEEVKYALKWPIFKAFHRLMNKHHISLYNNDPLHNNDLLTFAKLDLQPFAKTLSERSG

Homology

[Close]

BLAST of Sed0008950 vs. NCBI nr
Match: XP_022143531.1 ((-)-germacrene D synthase-like isoform X1 [Momordica charantia])

HSP 1 Score: 260.4 bits (664), Expect = 1.3e-65
Identity = 136/201 (67.66%), Postives = 159/201 (79.10%), Query Frame = 0


Query: 7   DDGVRKQLEELKEEVKNMLVTAQKCSEKLRLIDIIQRLGLSYHFEGEINEILDHIHN-PC 66
           DD VRKQLEE +EEV+ ML  A+KCSEKL LID IQRLGLSYHFEGEINEIL+H+ N  C
Sbjct: 47  DDMVRKQLEEQREEVRRMLEAAEKCSEKLSLIDSIQRLGLSYHFEGEINEILEHMQNDSC 106

Query: 67  NIDLDEDLYVMALRFRLLRQQGYF--------FTDELGAFKESIVKDERGLLSLYEASHL 126
           N+D DED+Y++ALRFRLLRQQGY         FT+E G FKES+VKD+RG+LSLY+ASHL
Sbjct: 107 NLDDDEDIYIVALRFRLLRQQGYSVSCEIFNRFTNENGDFKESMVKDQRGILSLYQASHL 166

Query: 127 RMNGENILDEALAFTTARLQEMAMDSSSCFGEEVKYALKWPIFKAFHRLMNKHHISLYNN 186
            MNGENILD+ALAFTT  LQ +AMD+SS F EE KY+LKWPI+KA  R   ++HISLY+ 
Sbjct: 167 GMNGENILDKALAFTTTHLQAIAMDASSPFAEEAKYSLKWPIYKAVPRFTARNHISLYDK 226

Query: 187 DPLHNNDLLTFAKLDLQPFAK 199
           DPL NN LL+FAKLD     K
Sbjct: 227 DPLKNNVLLSFAKLDFNALQK 247

[Close]

BLAST of Sed0008950 vs. NCBI nr
Match: XP_022143532.1 ((-)-germacrene D synthase-like isoform X2 [Momordica charantia])

HSP 1 Score: 260.4 bits (664), Expect = 1.3e-65
Identity = 136/201 (67.66%), Postives = 159/201 (79.10%), Query Frame = 0


Query: 7   DDGVRKQLEELKEEVKNMLVTAQKCSEKLRLIDIIQRLGLSYHFEGEINEILDHIHN-PC 66
           DD VRKQLEE +EEV+ ML  A+KCSEKL LID IQRLGLSYHFEGEINEIL+H+ N  C
Sbjct: 47  DDMVRKQLEEQREEVRRMLEAAEKCSEKLSLIDSIQRLGLSYHFEGEINEILEHMQNDSC 106

Query: 67  NIDLDEDLYVMALRFRLLRQQGYF--------FTDELGAFKESIVKDERGLLSLYEASHL 126
           N+D DED+Y++ALRFRLLRQQGY         FT+E G FKES+VKD+RG+LSLY+ASHL
Sbjct: 107 NLDDDEDIYIVALRFRLLRQQGYSVSCEIFNRFTNENGDFKESMVKDQRGILSLYQASHL 166

Query: 127 RMNGENILDEALAFTTARLQEMAMDSSSCFGEEVKYALKWPIFKAFHRLMNKHHISLYNN 186
            MNGENILD+ALAFTT  LQ +AMD+SS F EE KY+LKWPI+KA  R   ++HISLY+ 
Sbjct: 167 GMNGENILDKALAFTTTHLQAIAMDASSPFAEEAKYSLKWPIYKAVPRFTARNHISLYDK 226

Query: 187 DPLHNNDLLTFAKLDLQPFAK 199
           DPL NN LL+FAKLD     K
Sbjct: 227 DPLKNNVLLSFAKLDFNALQK 247

[Close]

BLAST of Sed0008950 vs. NCBI nr
Match: XP_022143526.1 ((-)-germacrene D synthase-like isoform X1 [Momordica charantia])

HSP 1 Score: 257.3 bits (656), Expect = 1.1e-64
Identity = 137/201 (68.16%), Postives = 155/201 (77.11%), Query Frame = 0


Query: 7   DDGVRKQLEELKEEVKNMLVTAQKCSEKLRLIDIIQRLGLSYHFEGEINEILDHIHN-PC 66
           DD VRKQLEE KE V+ M+  A KCSEKL LID IQRLGLSYHFEGEINEIL+H+ N  C
Sbjct: 47  DDVVRKQLEEQKEGVRRMVEAADKCSEKLSLIDSIQRLGLSYHFEGEINEILEHMQNDSC 106

Query: 67  NIDLDEDLYVMALRFRLLRQQGYF--------FTDELGAFKESIVKDERGLLSLYEASHL 126
           N+D DED+Y++ALRFRLLRQQGY         FT E G FKES+VKDE G+LSLY+ASHL
Sbjct: 107 NLDDDEDIYIVALRFRLLRQQGYSVSCEIFNRFTTENGDFKESMVKDECGILSLYQASHL 166

Query: 127 RMNGENILDEALAFTTARLQEMAMDSSSCFGEEVKYALKWPIFKAFHRLMNKHHISLYNN 186
            MNGENILD+ALAFTT  LQ MAMDSSS F EE KYALKWPI+KA  R   +H+ISLY+ 
Sbjct: 167 GMNGENILDKALAFTTTHLQAMAMDSSSPFAEEAKYALKWPIYKAMPRXTTRHYISLYDR 226

Query: 187 DPLHNNDLLTFAKLDLQPFAK 199
           DPL N+ LL+FAKLD     K
Sbjct: 227 DPLKNSVLLSFAKLDFNALQK 247

[Close]

BLAST of Sed0008950 vs. NCBI nr
Match: XP_022143527.1 ((-)-germacrene D synthase-like isoform X2 [Momordica charantia])

HSP 1 Score: 257.3 bits (656), Expect = 1.1e-64
Identity = 137/201 (68.16%), Postives = 155/201 (77.11%), Query Frame = 0


Query: 7   DDGVRKQLEELKEEVKNMLVTAQKCSEKLRLIDIIQRLGLSYHFEGEINEILDHIHN-PC 66
           DD VRKQLEE KE V+ M+  A KCSEKL LID IQRLGLSYHFEGEINEIL+H+ N  C
Sbjct: 47  DDVVRKQLEEQKEGVRRMVEAADKCSEKLSLIDSIQRLGLSYHFEGEINEILEHMQNDSC 106

Query: 67  NIDLDEDLYVMALRFRLLRQQGYF--------FTDELGAFKESIVKDERGLLSLYEASHL 126
           N+D DED+Y++ALRFRLLRQQGY         FT E G FKES+VKDE G+LSLY+ASHL
Sbjct: 107 NLDDDEDIYIVALRFRLLRQQGYSVSCEIFNRFTTENGDFKESMVKDECGILSLYQASHL 166

Query: 127 RMNGENILDEALAFTTARLQEMAMDSSSCFGEEVKYALKWPIFKAFHRLMNKHHISLYNN 186
            MNGENILD+ALAFTT  LQ MAMDSSS F EE KYALKWPI+KA  R   +H+ISLY+ 
Sbjct: 167 GMNGENILDKALAFTTTHLQAMAMDSSSPFAEEAKYALKWPIYKAMPRXTTRHYISLYDR 226

Query: 187 DPLHNNDLLTFAKLDLQPFAK 199
           DPL N+ LL+FAKLD     K
Sbjct: 227 DPLKNSVLLSFAKLDFNALQK 247

[Close]

BLAST of Sed0008950 vs. NCBI nr
Match: XP_022143530.1 (valencene synthase-like isoform X2 [Momordica charantia])

HSP 1 Score: 256.9 bits (655), Expect = 1.5e-64
Identity = 135/201 (67.16%), Postives = 156/201 (77.61%), Query Frame = 0


Query: 7   DDGVRKQLEELKEEVKNMLVTAQKCSEKLRLIDIIQRLGLSYHFEGEINEILDHIHN-PC 66
           DD VRKQLEE +EEV+ ML  A+KCSEKL LID IQRLG+SYHFEGEINEIL+H+ N  C
Sbjct: 42  DDMVRKQLEEQREEVRRMLEAAEKCSEKLSLIDSIQRLGISYHFEGEINEILEHMQNDSC 101

Query: 67  NIDLDEDLYVMALRFRLLRQQGYF--------FTDELGAFKESIVKDERGLLSLYEASHL 126
           N+D DED+Y++ALRFRLLRQQGY         FT+  G FKE+++KDE G+LSLYEASHL
Sbjct: 102 NLDDDEDIYIVALRFRLLRQQGYSVSCEIFNRFTNGDGDFKETMLKDECGILSLYEASHL 161

Query: 127 RMNGENILDEALAFTTARLQEMAMDSSSCFGEEVKYALKWPIFKAFHRLMNKHHISLYNN 186
           RMNGENILD+ALAFTT  LQ MAM SSS F EE KYALKWPI+KA  R   +H+ISLY+ 
Sbjct: 162 RMNGENILDKALAFTTTHLQAMAMSSSSPFSEEAKYALKWPIYKALPRFTTRHYISLYDK 221

Query: 187 DPLHNNDLLTFAKLDLQPFAK 199
           DPL  N LL+FAKLD     K
Sbjct: 222 DPLKTNVLLSFAKLDFNALQK 242

[Close]

BLAST of Sed0008950 vs. ExPASy Swiss-Prot
Match: Q6Q3H3 ((-)-germacrene D synthase OS=Vitis vinifera OX=29760 GN=VIT_19s0014g04930 PE=1 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 4.6e-45
Identity = 101/201 (50.25%), Postives = 132/201 (65.67%), Query Frame = 0


Query: 7   DDGVRKQLEELKEEVKNMLVTAQKCS-EKLRLIDIIQRLGLSYHFEGEINEILDHIHNPC 66
           DD +++ +++LKEEV+ ML+ A   S +KL LID IQRLG++YHFE EI+E+L H+ +  
Sbjct: 47  DDHLKQHVQQLKEEVRKMLMAADDDSAQKLLLIDAIQRLGVAYHFESEIDEVLKHMFDGS 106

Query: 67  NIDLDEDLYVMALRFRLLRQQGYF--------FTDELGAFKESIVKDERGLLSLYEASHL 126
            +  +ED+Y  +LRFRLLRQQGY         F D  G FKES+  D RG+LSLYEA+H 
Sbjct: 107 VVSAEEDVYTASLRFRLLRQQGYHVSCDLFNNFKDNEGNFKESLSSDVRGMLSLYEATHF 166

Query: 127 RMNGENILDEALAFTTARLQEMAMDSSSCFGEEVKYALKWPIFKAFHRLMNKHHISLYNN 186
           R++GE+ILDEALAFTT  LQ     SS+   E+V +ALK PI K   RL  +H+ S+Y  
Sbjct: 167 RVHGEDILDEALAFTTTHLQSATKHSSNPLAEQVVHALKQPIRKGLPRLEARHYFSVYQA 226

Query: 187 DPLHNNDLLTFAKLDLQPFAK 199
           D  HN  LL  AKLD     K
Sbjct: 227 DDSHNKALLKLAKLDFNLLQK 247

[Close]

BLAST of Sed0008950 vs. ExPASy Swiss-Prot
Match: B2KSJ5 ((+)-gamma-cadinene synthase OS=Cucumis melo OX=3656 PE=1 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.2e-39
Identity = 97/212 (45.75%), Postives = 131/212 (61.79%), Query Frame = 0


Query: 7   DDGVRKQLEELKEEVKNMLVT-AQKCSEKLRLIDIIQRLGLSYHFEGEINEILDHIHNPC 66
           D+G++++ E+LKEE++ M++   +    KL L+D IQRLG+SYHFE E++E L+HI+   
Sbjct: 49  DEGMKERTEKLKEEIRMMMIAYVENQLIKLNLVDSIQRLGVSYHFEDEVDEFLEHIYVSY 108

Query: 67  NIDL--------DEDLYVMALRFRLLRQQGY--------FFTDELGAFKESIVKDERGLL 126
           N  L         EDL++ AL FRLLRQQGY         F D+ G FKES+V+DERGLL
Sbjct: 109 NNSLLLSNKNSNGEDLHITALLFRLLRQQGYRISCDIFLKFMDDNGKFKESLVEDERGLL 168

Query: 127 SLYEASHLRMNGENILDEALAFTTARLQEMAMDSSS---CFGEEVKYALKWPIFKAFHRL 186
           SLYEASH+  +GE +L+EAL FTT  LQ      S+    F  EV  ALK PI K+  R+
Sbjct: 169 SLYEASHMMGHGEALLEEALEFTTTHLQTYIHRYSNINPSFASEVSNALKLPIRKSVPRI 228

Query: 187 MNKHHISLYNNDPLHNNDLLTFAKLDLQPFAK 199
             + ++ +Y   P HN  LL F+KLD     K
Sbjct: 229 KAREYLEIYQQHPSHNETLLEFSKLDFNILQK 260

[Close]

BLAST of Sed0008950 vs. ExPASy Swiss-Prot
Match: Q6Q3H2 (Valencene synthase OS=Vitis vinifera OX=29760 GN=ValCS PE=1 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.9e-39
Identity = 96/194 (49.48%), Postives = 124/194 (63.92%), Query Frame = 0


Query: 12  KQLEELKEEVKNMLVTAQKC--SEKLRLIDIIQRLGLSYHFEGEINEILDHIHN---PCN 71
           +Q+E+LK+EVK  L  A     S+ L  ID +QRLG++YHFE EI E L HI N    CN
Sbjct: 49  EQIEDLKKEVKRKLTAAAVANPSQLLNFIDAVQRLGVAYHFEQEIEEALQHICNSFHDCN 108

Query: 72  IDLDEDLYVMALRFRLLRQQGYF--------FTDELGAFKESIVKDERGLLSLYEASHLR 131
            D+D DLY +AL FRLLRQQGY         FTDE G FKE+++ D RG+L LYEA+HLR
Sbjct: 109 -DMDGDLYNIALGFRLLRQQGYTISCDIFNKFTDERGRFKEALISDVRGMLGLYEAAHLR 168

Query: 132 MNGENILDEALAFTTARLQEMAMDSSSCFGEEVKYALKWPIFKAFHRLMNKHHISLYNND 191
           ++GE+IL +ALAFTT  L+ M         E+V +AL  PI K   RL  + +IS+Y ++
Sbjct: 169 VHGEDILAKALAFTTTHLKAMVESLGYHLAEQVAHALNRPIRKGLERLEARWYISVYQDE 228

Query: 192 PLHNNDLLTFAKLD 193
             H+  LL  AKLD
Sbjct: 229 AFHDKTLLELAKLD 241

[Close]

BLAST of Sed0008950 vs. ExPASy Swiss-Prot
Match: B9SCB6 (Probable terpene synthase 2 OS=Ricinus communis OX=3988 GN=TPS2 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 6.4e-39
Identity = 91/201 (45.27%), Postives = 128/201 (63.68%), Query Frame = 0


Query: 7   DDGVRKQLEELKEEVKNMLVTAQKCSEKLRLIDIIQRLGLSYHFEGEINEILDHIHN-PC 66
           +D + +Q+E LKEEVK M+ +A + S+ L LID++QRLG+SYHFE EI E L  + N   
Sbjct: 42  EDDMEQQVERLKEEVKKMIASADEPSQILNLIDLLQRLGVSYHFEKEIEEALQQVLNMNS 101

Query: 67  NIDLDEDLYVMALRFRLLRQQGY--------FFTDELGAFKESIVKDERGLLSLYEASHL 126
           + D D+DL+ +ALRFRLLR+QG          F D  G F +++  D +G+LSLYEA+H 
Sbjct: 102 DSDKDDDLHSVALRFRLLREQGLNVSCDVFNKFRDRNGHFIQTLKTDLQGMLSLYEAAHF 161

Query: 127 RMNGENILDEALAFTTARLQEMAMDSSSCFGEEVKYALKWPIFKAFHRLMNKHHISLYNN 186
           R++GE ILD+ALAFTT  L+ +  + S     ++   L+ P+ K+  R+  +H IS+Y  
Sbjct: 162 RVHGEGILDDALAFTTTYLESIVPNLSPPLAAQISRTLRQPLRKSLARVEARHFISIYQE 221

Query: 187 DPLHNNDLLTFAKLDLQPFAK 199
           D  HN  LLTFAKLD     K
Sbjct: 222 DTSHNEVLLTFAKLDFNLLQK 242

[Close]

BLAST of Sed0008950 vs. ExPASy Swiss-Prot
Match: G5CV46 (Viridiflorene synthase OS=Solanum lycopersicum OX=4081 GN=TPS31 PE=1 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.3e-36
Identity = 84/192 (43.75%), Postives = 130/192 (67.71%), Query Frame = 0


Query: 12  KQLEELKEEVKNMLVTAQKCSEKLRLIDIIQRLGLSYHFEGEINEILDHIHN-PCNIDLD 71
           +++E LKE+ ++ML++ +  +EKL LIDI++RLG++YHFE +I+++L+HI N   N +  
Sbjct: 48  EEIETLKEQTRSMLMSGKTLAEKLNLIDIVERLGIAYHFEKQIDDMLNHIFNIDPNFEAH 107

Query: 72  E--DLYVMALRFRLLRQQGYF--------FTDELGAFKESIVKDERGLLSLYEASHLRMN 131
           E  DL  ++L+FR+LRQ GY+        F D  G FKES+  D RG+L+LYEASH+R +
Sbjct: 108 EYNDLCTLSLQFRILRQHGYYISPKIFSRFQDANGKFKESLCDDIRGILNLYEASHVRTH 167

Query: 132 GENILDEALAFTTARLQEMAMDSSSCFGEEVKYALKWPIFKAFHRLMNKHHISLYNNDPL 191
           GE+ L+EALAF+TA L+  A    S   ++V +AL+  + K+  R+  ++ IS+Y  + L
Sbjct: 168 GEDTLEEALAFSTAHLESAAPHLKSPLSKQVTHALEQSLHKSIPRVETRYFISIYEEEEL 227

Query: 192 HNNDLLTFAKLD 193
            N+  L FAKLD
Sbjct: 228 KNDVFLRFAKLD 239

[Close]

BLAST of Sed0008950 vs. ExPASy TrEMBL
Match: A0A6J1CQI9 ((-)-germacrene D synthase-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111013402 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 6.4e-66
Identity = 136/201 (67.66%), Postives = 159/201 (79.10%), Query Frame = 0


Query: 7   DDGVRKQLEELKEEVKNMLVTAQKCSEKLRLIDIIQRLGLSYHFEGEINEILDHIHN-PC 66
           DD VRKQLEE +EEV+ ML  A+KCSEKL LID IQRLGLSYHFEGEINEIL+H+ N  C
Sbjct: 47  DDMVRKQLEEQREEVRRMLEAAEKCSEKLSLIDSIQRLGLSYHFEGEINEILEHMQNDSC 106

Query: 67  NIDLDEDLYVMALRFRLLRQQGYF--------FTDELGAFKESIVKDERGLLSLYEASHL 126
           N+D DED+Y++ALRFRLLRQQGY         FT+E G FKES+VKD+RG+LSLY+ASHL
Sbjct: 107 NLDDDEDIYIVALRFRLLRQQGYSVSCEIFNRFTNENGDFKESMVKDQRGILSLYQASHL 166

Query: 127 RMNGENILDEALAFTTARLQEMAMDSSSCFGEEVKYALKWPIFKAFHRLMNKHHISLYNN 186
            MNGENILD+ALAFTT  LQ +AMD+SS F EE KY+LKWPI+KA  R   ++HISLY+ 
Sbjct: 167 GMNGENILDKALAFTTTHLQAIAMDASSPFAEEAKYSLKWPIYKAVPRFTARNHISLYDK 226

Query: 187 DPLHNNDLLTFAKLDLQPFAK 199
           DPL NN LL+FAKLD     K
Sbjct: 227 DPLKNNVLLSFAKLDFNALQK 247

[Close]

BLAST of Sed0008950 vs. ExPASy TrEMBL
Match: A0A6J1CR35 ((-)-germacrene D synthase-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013402 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 6.4e-66
Identity = 136/201 (67.66%), Postives = 159/201 (79.10%), Query Frame = 0


Query: 7   DDGVRKQLEELKEEVKNMLVTAQKCSEKLRLIDIIQRLGLSYHFEGEINEILDHIHN-PC 66
           DD VRKQLEE +EEV+ ML  A+KCSEKL LID IQRLGLSYHFEGEINEIL+H+ N  C
Sbjct: 47  DDMVRKQLEEQREEVRRMLEAAEKCSEKLSLIDSIQRLGLSYHFEGEINEILEHMQNDSC 106

Query: 67  NIDLDEDLYVMALRFRLLRQQGYF--------FTDELGAFKESIVKDERGLLSLYEASHL 126
           N+D DED+Y++ALRFRLLRQQGY         FT+E G FKES+VKD+RG+LSLY+ASHL
Sbjct: 107 NLDDDEDIYIVALRFRLLRQQGYSVSCEIFNRFTNENGDFKESMVKDQRGILSLYQASHL 166

Query: 127 RMNGENILDEALAFTTARLQEMAMDSSSCFGEEVKYALKWPIFKAFHRLMNKHHISLYNN 186
            MNGENILD+ALAFTT  LQ +AMD+SS F EE KY+LKWPI+KA  R   ++HISLY+ 
Sbjct: 167 GMNGENILDKALAFTTTHLQAIAMDASSPFAEEAKYSLKWPIYKAVPRFTARNHISLYDK 226

Query: 187 DPLHNNDLLTFAKLDLQPFAK 199
           DPL NN LL+FAKLD     K
Sbjct: 227 DPLKNNVLLSFAKLDFNALQK 247

[Close]

BLAST of Sed0008950 vs. ExPASy TrEMBL
Match: A0A6J1CQI4 ((-)-germacrene D synthase-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111013399 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 5.4e-65
Identity = 137/201 (68.16%), Postives = 155/201 (77.11%), Query Frame = 0


Query: 7   DDGVRKQLEELKEEVKNMLVTAQKCSEKLRLIDIIQRLGLSYHFEGEINEILDHIHN-PC 66
           DD VRKQLEE KE V+ M+  A KCSEKL LID IQRLGLSYHFEGEINEIL+H+ N  C
Sbjct: 47  DDVVRKQLEEQKEGVRRMVEAADKCSEKLSLIDSIQRLGLSYHFEGEINEILEHMQNDSC 106

Query: 67  NIDLDEDLYVMALRFRLLRQQGYF--------FTDELGAFKESIVKDERGLLSLYEASHL 126
           N+D DED+Y++ALRFRLLRQQGY         FT E G FKES+VKDE G+LSLY+ASHL
Sbjct: 107 NLDDDEDIYIVALRFRLLRQQGYSVSCEIFNRFTTENGDFKESMVKDECGILSLYQASHL 166

Query: 127 RMNGENILDEALAFTTARLQEMAMDSSSCFGEEVKYALKWPIFKAFHRLMNKHHISLYNN 186
            MNGENILD+ALAFTT  LQ MAMDSSS F EE KYALKWPI+KA  R   +H+ISLY+ 
Sbjct: 167 GMNGENILDKALAFTTTHLQAMAMDSSSPFAEEAKYALKWPIYKAMPRXTTRHYISLYDR 226

Query: 187 DPLHNNDLLTFAKLDLQPFAK 199
           DPL N+ LL+FAKLD     K
Sbjct: 227 DPLKNSVLLSFAKLDFNALQK 247

[Close]

BLAST of Sed0008950 vs. ExPASy TrEMBL
Match: A0A6J1CR31 ((-)-germacrene D synthase-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013399 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 5.4e-65
Identity = 137/201 (68.16%), Postives = 155/201 (77.11%), Query Frame = 0


Query: 7   DDGVRKQLEELKEEVKNMLVTAQKCSEKLRLIDIIQRLGLSYHFEGEINEILDHIHN-PC 66
           DD VRKQLEE KE V+ M+  A KCSEKL LID IQRLGLSYHFEGEINEIL+H+ N  C
Sbjct: 47  DDVVRKQLEEQKEGVRRMVEAADKCSEKLSLIDSIQRLGLSYHFEGEINEILEHMQNDSC 106

Query: 67  NIDLDEDLYVMALRFRLLRQQGYF--------FTDELGAFKESIVKDERGLLSLYEASHL 126
           N+D DED+Y++ALRFRLLRQQGY         FT E G FKES+VKDE G+LSLY+ASHL
Sbjct: 107 NLDDDEDIYIVALRFRLLRQQGYSVSCEIFNRFTTENGDFKESMVKDECGILSLYQASHL 166

Query: 127 RMNGENILDEALAFTTARLQEMAMDSSSCFGEEVKYALKWPIFKAFHRLMNKHHISLYNN 186
            MNGENILD+ALAFTT  LQ MAMDSSS F EE KYALKWPI+KA  R   +H+ISLY+ 
Sbjct: 167 GMNGENILDKALAFTTTHLQAMAMDSSSPFAEEAKYALKWPIYKAMPRXTTRHYISLYDR 226

Query: 187 DPLHNNDLLTFAKLDLQPFAK 199
           DPL N+ LL+FAKLD     K
Sbjct: 227 DPLKNSVLLSFAKLDFNALQK 247

[Close]

BLAST of Sed0008950 vs. ExPASy TrEMBL
Match: A0A6J1CP21 (valencene synthase-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013401 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 7.1e-65
Identity = 135/201 (67.16%), Postives = 156/201 (77.61%), Query Frame = 0


Query: 7   DDGVRKQLEELKEEVKNMLVTAQKCSEKLRLIDIIQRLGLSYHFEGEINEILDHIHN-PC 66
           DD VRKQLEE +EEV+ ML  A+KCSEKL LID IQRLG+SYHFEGEINEIL+H+ N  C
Sbjct: 42  DDMVRKQLEEQREEVRRMLEAAEKCSEKLSLIDSIQRLGISYHFEGEINEILEHMQNDSC 101

Query: 67  NIDLDEDLYVMALRFRLLRQQGYF--------FTDELGAFKESIVKDERGLLSLYEASHL 126
           N+D DED+Y++ALRFRLLRQQGY         FT+  G FKE+++KDE G+LSLYEASHL
Sbjct: 102 NLDDDEDIYIVALRFRLLRQQGYSVSCEIFNRFTNGDGDFKETMLKDECGILSLYEASHL 161

Query: 127 RMNGENILDEALAFTTARLQEMAMDSSSCFGEEVKYALKWPIFKAFHRLMNKHHISLYNN 186
           RMNGENILD+ALAFTT  LQ MAM SSS F EE KYALKWPI+KA  R   +H+ISLY+ 
Sbjct: 162 RMNGENILDKALAFTTTHLQAMAMSSSSPFSEEAKYALKWPIYKALPRFTTRHYISLYDK 221

Query: 187 DPLHNNDLLTFAKLDLQPFAK 199
           DPL  N LL+FAKLD     K
Sbjct: 222 DPLKTNVLLSFAKLDFNALQK 242

[Close]

BLAST of Sed0008950 vs. TAIR 10
Match: AT5G23960.1 (terpene synthase 21 )

HSP 1 Score: 109.0 bits (271), Expect = 4.6e-24
Identity = 73/192 (38.02%), Postives = 108/192 (56.25%), Query Frame = 0


Query: 17  LKEEVKNMLVTAQ-KCSEKLRLIDIIQRLGLSYHFEGEINEILDHIHNPCNIDLDE---- 76
           LKE VK   ++++    E ++ ID + RLG+SYHFE +I E LD   + C +D  +    
Sbjct: 41  LKEAVKEAFMSSKANPIENIKFIDALCRLGVSYHFEKDIVEQLDKSFD-C-LDFPQMVRQ 100

Query: 77  ---DLYVMALRFRLLRQQGY--------FFTDELGAFKESIVKDERGLLSLYEASHLRMN 136
              DLY + + F++ RQ G+         F DE G FK  +V D  G+LSLYEA+    +
Sbjct: 101 EGCDLYTVGIIFQVFRQFGFKLSADVFEKFKDENGKFKGHLVTDAYGMLSLYEAAQWGTH 160

Query: 137 GENILDEALAFTTARLQEMAMDSSSCFGEEVKYALKWPIFKAFHRLMNKHHISLYNNDPL 193
           GE+I+DEALAF+ + L+E++  SS      +K ALK P  K   R+  + +IS Y  +  
Sbjct: 161 GEDIIDEALAFSRSHLEEISSRSSPHLAIRIKNALKHPYHKGISRIETRQYISYYEEEES 220

[Close]

BLAST of Sed0008950 vs. TAIR 10
Match: AT5G23960.2 (terpene synthase 21 )

HSP 1 Score: 109.0 bits (271), Expect = 4.6e-24
Identity = 73/192 (38.02%), Postives = 108/192 (56.25%), Query Frame = 0


Query: 17  LKEEVKNMLVTAQ-KCSEKLRLIDIIQRLGLSYHFEGEINEILDHIHNPCNIDLDE---- 76
           LKE VK   ++++    E ++ ID + RLG+SYHFE +I E LD   + C +D  +    
Sbjct: 41  LKEAVKEAFMSSKANPIENIKFIDALCRLGVSYHFEKDIVEQLDKSFD-C-LDFPQMVRQ 100

Query: 77  ---DLYVMALRFRLLRQQGY--------FFTDELGAFKESIVKDERGLLSLYEASHLRMN 136
              DLY + + F++ RQ G+         F DE G FK  +V D  G+LSLYEA+    +
Sbjct: 101 EGCDLYTVGIIFQVFRQFGFKLSADVFEKFKDENGKFKGHLVTDAYGMLSLYEAAQWGTH 160

Query: 137 GENILDEALAFTTARLQEMAMDSSSCFGEEVKYALKWPIFKAFHRLMNKHHISLYNNDPL 193
           GE+I+DEALAF+ + L+E++  SS      +K ALK P  K   R+  + +IS Y  +  
Sbjct: 161 GEDIIDEALAFSRSHLEEISSRSSPHLAIRIKNALKHPYHKGISRIETRQYISYYEEEES 220

[Close]

BLAST of Sed0008950 vs. TAIR 10
Match: AT3G14490.1 (Terpenoid cyclases/Protein prenyltransferases superfamily protein )

HSP 1 Score: 107.1 bits (266), Expect = 1.7e-23
Identity = 70/203 (34.48%), Postives = 118/203 (58.13%), Query Frame = 0


Query: 5   EEDDGVRKQLEELKEEVKNMLVTAQKC-SEKLRLIDIIQRLGLSYHFEGEINEILDHIHN 64
           E DD  R+    +K +V++ML +++   +E++RLI ++  LG++YHFE EI+EIL     
Sbjct: 83  EFDDFSREIEVTMKPKVRDMLKSSKNSDNERIRLIHLLMNLGIAYHFEIEIDEILGQAFG 142

Query: 65  PCN--IDLDEDLYVMALRFRLLRQQGYF--------FTDELGAFKESIVKDERGLLSLYE 124
             +  I  + DL  ++  F + R +GY+        F  E G FKES+ +D RG+L LYE
Sbjct: 143 NLDDIIAKENDLETISTMFEVFRLRGYYMPCYAFNRFKGEDGRFKESLAEDIRGMLQLYE 202

Query: 125 ASHLRMNGENILDEALAFTTARLQEMAMDSSSCFGEEVKYALKWPIFKA-FHR---LMNK 184
           A+HL    E+I+DEAL+FT  RL+ +  + ++     +   ++  +++A +H    L+ +
Sbjct: 203 AAHLGTPSEDIMDEALSFTRYRLESLTSNHTATASPHLSKHIQNALYRARYHNLEILVAR 262

Query: 185 HHISLYNNDPLHNNDLLTFAKLD 193
            +IS Y  +  H+  LL FAKL+
Sbjct: 263 EYISFYEQEEDHDETLLKFAKLN 285

[Close]

BLAST of Sed0008950 vs. TAIR 10
Match: AT4G16730.1 (terpene synthase 02 )

HSP 1 Score: 102.4 bits (254), Expect = 4.3e-22
Identity = 71/193 (36.79%), Postives = 104/193 (53.89%), Query Frame = 0


Query: 18  KEEVKNMLVTAQKCSEKLRLIDIIQRLGLSYHFEGEINEILDHIHNP-CNIDLD-EDLYV 77
           KEEV+  L   +   E+L +ID +QRLG+SYH++ EI++IL  IH+    I+ + +DL+ 
Sbjct: 28  KEEVRKTLNEIEGSIEQLEMIDSLQRLGISYHYKHEIHDILRKIHDQHGEIERETQDLHA 87

Query: 78  MALRFRLLRQQGY--------FFTDELGAFKESIVKDERGLLSLYEASHLRMNGENILDE 137
            +L F LLRQ G+         F  E G F++++  D +GLLSLYEAS+  M+ E  L E
Sbjct: 88  TSLEFILLRQHGFDVSQDAFDVFISETGEFRKTLHSDIKGLLSLYEASYFSMDSEFKLKE 147

Query: 138 ALAFTTARLQEMAMDSSSCFGEE--------VKYALKWPIFKAFHRLMNKHHISLYNNDP 193
              +   RL E   +SS     E        VK AL+ P   +  RL  + +I++Y    
Sbjct: 148 TRIYANKRLSEFVAESSKTICREDETYILEMVKRALETPYHWSIRRLEARWYINVYEKKH 207

[Close]

BLAST of Sed0008950 vs. TAIR 10
Match: AT3G29410.1 (Terpenoid cyclases/Protein prenyltransferases superfamily protein )

HSP 1 Score: 101.3 bits (251), Expect = 9.6e-22
Identity = 69/200 (34.50%), Postives = 115/200 (57.50%), Query Frame = 0


Query: 6   EDDGVRKQLEEL-KEEVKNMLVTAQKC-SEKLRLIDIIQRLGLSYHFEGEINEILDHIHN 65
           E + + K++E + K +V++ML++      E++RLI ++  LG++Y++E EI EIL   + 
Sbjct: 87  EFEALEKEIETVFKPKVRDMLMSPHSSDKERIRLIHLLISLGIAYYYENEIEEILHKAYG 146

Query: 66  --PCNIDLDEDLYVMALRFRLLRQQGY--------FFTDELGAFKESIVKDERGLLSLYE 125
              C I  ++DL  +A+ F + R  G+         F  E G FKES+V D RGLL LYE
Sbjct: 147 KLACLISDEDDLETIAIMFEVFRLYGHKMPCDVFERFKSEDGKFKESLVGDVRGLLQLYE 206

Query: 126 ASHLRMNGENILDEALAFTTARLQEMA-MDSSSCFGEEVKYALKWPIFKAFHRLMNKHHI 185
           A+HL    E+I+DEAL+F    L+ +A  ++SS   + V+  L    + +   L+ + +I
Sbjct: 207 AAHLGAPSEDIMDEALSFARYHLEPLAGTETSSNLFKHVENVLYRARYHSIEILVARQYI 266

Query: 186 SLYNNDPLHNNDLLTFAKLD 193
           S Y+ +   +  LL F+KL+
Sbjct: 267 SFYDQEEDQDETLLRFSKLN 286

The following BLAST results are available for this feature:

BLAST of Sed0008950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143531.1	1.3e-65	67.66	(-)-germacrene D synthase-like isoform X1 [Momordica charantia]	[more]
XP_022143532.1	1.3e-65	67.66	(-)-germacrene D synthase-like isoform X2 [Momordica charantia]	[more]
XP_022143526.1	1.1e-64	68.16	(-)-germacrene D synthase-like isoform X1 [Momordica charantia]	[more]
XP_022143527.1	1.1e-64	68.16	(-)-germacrene D synthase-like isoform X2 [Momordica charantia]	[more]
XP_022143530.1	1.5e-64	67.16	valencene synthase-like isoform X2 [Momordica charantia]	[more]

BLAST of Sed0008950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6Q3H3	4.6e-45	50.25	(-)-germacrene D synthase OS=Vitis vinifera OX=29760 GN=VIT_19s0014g04930 PE=1 S...	[more]
B2KSJ5	2.2e-39	45.75	(+)-gamma-cadinene synthase OS=Cucumis melo OX=3656 PE=1 SV=1	[more]
Q6Q3H2	2.9e-39	49.48	Valencene synthase OS=Vitis vinifera OX=29760 GN=ValCS PE=1 SV=1	[more]
B9SCB6	6.4e-39	45.27	Probable terpene synthase 2 OS=Ricinus communis OX=3988 GN=TPS2 PE=3 SV=1	[more]
G5CV46	1.3e-36	43.75	Viridiflorene synthase OS=Solanum lycopersicum OX=4081 GN=TPS31 PE=1 SV=1	[more]

BLAST of Sed0008950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQI9	6.4e-66	67.66	(-)-germacrene D synthase-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1CR35	6.4e-66	67.66	(-)-germacrene D synthase-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1CQI4	5.4e-65	68.16	(-)-germacrene D synthase-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1CR31	5.4e-65	68.16	(-)-germacrene D synthase-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1CP21	7.1e-65	67.16	valencene synthase-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC11101340...	[more]

BLAST of Sed0008950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23960.1	4.6e-24	38.02	terpene synthase 21	[more]
AT5G23960.2	4.6e-24	38.02	terpene synthase 21	[more]
AT3G14490.1	1.7e-23	34.48	Terpenoid cyclases/Protein prenyltransferases superfamily protein	[more]
AT4G16730.1	4.3e-22	36.79	terpene synthase 02	[more]
AT3G29410.1	9.6e-22	34.50	Terpenoid cyclases/Protein prenyltransferases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 11..34
None	No IPR available	PANTHER	PTHR31225	OS04G0344100 PROTEIN-RELATED	coord: 7..193
None	No IPR available	PANTHER	PTHR31225:SF111	TERPENE SYNTHASE 2-RELATED	coord: 7..193
IPR036965	Terpene synthase, N-terminal domain superfamily	GENE3D	1.50.10.130		coord: 29..181 e-value: 5.3E-58 score: 198.6
IPR008949	Isoprenoid synthase domain superfamily	GENE3D	1.10.600.10	Farnesyl Diphosphate Synthase	coord: 3..194 e-value: 5.3E-58 score: 198.6
IPR001906	Terpene synthase, N-terminal domain	PFAM	PF01397	Terpene_synth	coord: 5..155 e-value: 4.1E-44 score: 150.6
IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	SUPERFAMILY	48239	Terpenoid cyclases/Protein prenyltransferases	coord: 6..178

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0008950.1	Sed0008950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016102	diterpenoid biosynthetic process
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0010333	terpene synthase activity
molecular_function	GO:0016829	lyase activity