Sed0008889 (gene) Chayote v1

Overview


Name	Sed0008889
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-type E3 ubiquitin transferase
Location	LG12: 28419200 .. 28420202 (+)
RNA-Seq Expression	Sed0008889
Synteny	Sed0008889

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCTTTTAACTGTAAAATATTATAAAATTCTAAATATTAATGCAAAAATCCATCATGATTGTTACTCTTCTTCTTCTTCTTCTTCTTCCCAAAAACACCCACAAAACAGAAAACTCATTTTTCTTCTTCTTCACAAGTTCCAATTCCACAAAAAAATGGGTGATTCTGTTTCAACCTCCTTCACTCAGCCAACGTCTCATCCTGCAAAATCAAGCCTACCCATGTTGTATTACGGCCTCGTCGTCATCGGAACGGCGGCGATTGTGTTGATTATTTACAATTTCATCATCATCAAGTGGTGTTCCGACAGCCGCCACGGCCGGGCTTCACCGCCGCTGGCTGGAAGCTATGCTGAGATGATGGTGAGTTCTAGCCGGAGCTTGCGAAACTCCGGCGGGAATTTGTTCAGCTTCAAATTCAAGAAAGGGTCTGCGGCGGCGGCGGCGGCGGCGATGGTAGAAGATGAAGAAGGGAATGTGAATGAATGTGTGGTTTGTTTGTCGGCGTTTGAGGATGGGGAAGAGGTGAAGAAACTACCGAGATGTACTCATATGTTCCATGCCCCTTGTATTGACATGTGGCTTCACTCTCACTCCGATTGCCCCCTCTGTCGGGCCCCGGTGGCGGCGCCGGGGCTGTGCCAACGCCATGCCACGGCGGGGCAACAGGAGAATTCAGGGCATGGGTTGTTGGAATCCGGCAGCTTGGTATAAGGCCTAGTTTGGTAAAAGGGGAGAAAAAAAAAAAAGAAGAGAAAACAAGTTGGTTTATAAAAGAAAATGGGTGGTTGGATTTGGATCTCTTCTGTGAATTGTGATGTTGTGTTTGGTGGTCCAAGGGATGAGAGGACAATGAAGAATTCTAAGAGTTGTAGGTGTTTTAATTGTGGTGTATTTGTTCTTTAGGCCATCTCATTAATAGAAGGCCCTCTCTATTATGCATATAGTTTATCAACACTTGACAATTCTTTTTGGGTATGAAGACCCCTAGCCAACTAAGAGG

mRNA sequence

CTTCTTTTAACTGTAAAATATTATAAAATTCTAAATATTAATGCAAAAATCCATCATGATTGTTACTCTTCTTCTTCTTCTTCTTCTTCCCAAAAACACCCACAAAACAGAAAACTCATTTTTCTTCTTCTTCACAAGTTCCAATTCCACAAAAAAATGGGTGATTCTGTTTCAACCTCCTTCACTCAGCCAACGTCTCATCCTGCAAAATCAAGCCTACCCATGTTGTATTACGGCCTCGTCGTCATCGGAACGGCGGCGATTGTGTTGATTATTTACAATTTCATCATCATCAAGTGGTGTTCCGACAGCCGCCACGGCCGGGCTTCACCGCCGCTGGCTGGAAGCTATGCTGAGATGATGGTGAGTTCTAGCCGGAGCTTGCGAAACTCCGGCGGGAATTTGTTCAGCTTCAAATTCAAGAAAGGGTCTGCGGCGGCGGCGGCGGCGGCGATGGTAGAAGATGAAGAAGGGAATGTGAATGAATGTGTGGTTTGTTTGTCGGCGTTTGAGGATGGGGAAGAGGTGAAGAAACTACCGAGATGTACTCATATGTTCCATGCCCCTTGTATTGACATGTGGCTTCACTCTCACTCCGATTGCCCCCTCTGTCGGGCCCCGGTGGCGGCGCCGGGGCTGTGCCAACGCCATGCCACGGCGGGGCAACAGGAGAATTCAGGGCATGGGTTGTTGGAATCCGGCAGCTTGGTATAAGGCCTAGTTTGGTAAAAGGGGAGAAAAAAAAAAAAGAAGAGAAAACAAGTTGGTTTATAAAAGAAAATGGGTGGTTGGATTTGGATCTCTTCTGTGAATTGTGATGTTGTGTTTGGTGGTCCAAGGGATGAGAGGACAATGAAGAATTCTAAGAGTTGTAGGTGTTTTAATTGTGGTGTATTTGTTCTTTAGGCCATCTCATTAATAGAAGGCCCTCTCTATTATGCATATAGTTTATCAACACTTGACAATTCTTTTTGGGTATGAAGACCCCTAGCCAACTAAGAGG

Coding sequence (CDS)

ATGGGTGATTCTGTTTCAACCTCCTTCACTCAGCCAACGTCTCATCCTGCAAAATCAAGCCTACCCATGTTGTATTACGGCCTCGTCGTCATCGGAACGGCGGCGATTGTGTTGATTATTTACAATTTCATCATCATCAAGTGGTGTTCCGACAGCCGCCACGGCCGGGCTTCACCGCCGCTGGCTGGAAGCTATGCTGAGATGATGGTGAGTTCTAGCCGGAGCTTGCGAAACTCCGGCGGGAATTTGTTCAGCTTCAAATTCAAGAAAGGGTCTGCGGCGGCGGCGGCGGCGGCGATGGTAGAAGATGAAGAAGGGAATGTGAATGAATGTGTGGTTTGTTTGTCGGCGTTTGAGGATGGGGAAGAGGTGAAGAAACTACCGAGATGTACTCATATGTTCCATGCCCCTTGTATTGACATGTGGCTTCACTCTCACTCCGATTGCCCCCTCTGTCGGGCCCCGGTGGCGGCGCCGGGGCTGTGCCAACGCCATGCCACGGCGGGGCAACAGGAGAATTCAGGGCATGGGTTGTTGGAATCCGGCAGCTTGGTATAA

Protein sequence

MGDSVSTSFTQPTSHPAKSSLPMLYYGLVVIGTAAIVLIIYNFIIIKWCSDSRHGRASPPLAGSYAEMMVSSSRSLRNSGGNLFSFKFKKGSAAAAAAAMVEDEEGNVNECVVCLSAFEDGEEVKKLPRCTHMFHAPCIDMWLHSHSDCPLCRAPVAAPGLCQRHATAGQQENSGHGLLESGSLV

Homology

[Close]

BLAST of Sed0008889 vs. NCBI nr
Match: XP_023516728.1 (E3 ubiquitin-protein ligase EL5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 281.2 bits (718), Expect = 6.5e-72
Identity = 146/186 (78.49%), Postives = 158/186 (84.95%), Query Frame = 0


Query: 1   MGDSVSTSFTQPTSHPAKSSLPMLYYGLVVIGTAAIVLIIYNFIIIKWCSDSRHGRASPP 60
           M DS S  F QPT+HPAKSSLPMLYYGLVVIGTAAIVL++YNFI+I WCSD+R GRASP 
Sbjct: 1   MSDSASNYFAQPTNHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSDNRRGRASPA 60

Query: 61  LAGSYAEMMVSSSRSLRNSGGNLF-SFKFKKGSAAAAAAAMVEDEEGNVNECVVCLSAFE 120
           LAG+YAE MV+SSRSL++S  NL  SFKFKKGSAAAAAAA+VE EEGN NECVVCLSAFE
Sbjct: 61  LAGNYAE-MVNSSRSLQSSNRNLLCSFKFKKGSAAAAAAAVVE-EEGNGNECVVCLSAFE 120

Query: 121 DGEEVKKLPRCTHMFHAPCIDMWLHSHSDCPLCRAPVAAPGLCQRHATAGQQENSGHGLL 180
           +GEEVKKLPRC HMFHA CIDMWL SH DCPLCRAPVA PGL +R   A QQ NSGHGL 
Sbjct: 121 EGEEVKKLPRCMHMFHARCIDMWLFSHCDCPLCRAPVAVPGLSKRQTVAEQQGNSGHGLP 180

Query: 181 ESGSLV 186
           ESG LV
Sbjct: 181 ESGGLV 184

[Close]

BLAST of Sed0008889 vs. NCBI nr
Match: XP_022968369.1 (RING-H2 finger protein ATL52-like [Cucurbita maxima])

HSP 1 Score: 278.5 bits (711), Expect = 4.2e-71
Identity = 145/189 (76.72%), Postives = 155/189 (82.01%), Query Frame = 0


Query: 1   MGDSVSTSFTQPTSHPAKSSLPMLYYGLVVIGTAAIVLIIYNFIIIKWCSDSRHGRASPP 60
           MGDS ST   QPTSHPAKSSLPMLYYGLVVIGTA IVL++YN IIIKWCSD+ HG+ASP 
Sbjct: 1   MGDSASTFIAQPTSHPAKSSLPMLYYGLVVIGTATIVLVLYNLIIIKWCSDNSHGQASPA 60

Query: 61  LAGSYAEMMVSSSRSLRNSGGNLF-SFKFKKGSAAAAAAAMVEDEEGNVNECVVCLSAFE 120
           LAGSYAE MV+SSRS ++S  NL  SFKFKKGS A A A +  +EEG  NEC VCLSAFE
Sbjct: 61  LAGSYAE-MVNSSRSFQSSNRNLLSSFKFKKGSTAKATATI--EEEGIGNECAVCLSAFE 120

Query: 121 DGEEVKKLPRCTHMFHAPCIDMWLHSHSDCPLCRAPVAAPGLCQRHA---TAGQQENSGH 180
           DGEEVKKLPRCTHMFHAPCIDMWL+SHSDCPLCRAP  AP LCQRH     A QQ NSGH
Sbjct: 121 DGEEVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRAPAMAPALCQRHTAEDAAEQQVNSGH 180

Query: 181 GLLESGSLV 186
           GLLES SLV
Sbjct: 181 GLLESSSLV 186

[Close]

BLAST of Sed0008889 vs. NCBI nr
Match: XP_038879803.1 (RING-H2 finger protein ATL39-like [Benincasa hispida])

HSP 1 Score: 278.1 bits (710), Expect = 5.5e-71
Identity = 144/185 (77.84%), Postives = 154/185 (83.24%), Query Frame = 0


Query: 1   MGDSVSTSFTQPTSHPAKSSLPMLYYGLVVIGTAAIVLIIYNFIIIKWCSDSRHGRASPP 60
           M DS STSF QPT HPAKSSLPMLYYGLVV+GTAAIVL++YNFI+IKWCSD+RH RASP 
Sbjct: 1   MSDSSSTSFAQPTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRASPA 60

Query: 61  LAGSYAEMMVSSSRSLRNSGGNLFSFKFKKGSAAAAAAAMVEDEEGNVNECVVCLSAFED 120
           LAGSYAEMM +SSRS  +S   L SFKFKKGS  AAAAA   +EEG  NEC VCLSAFED
Sbjct: 61  LAGSYAEMM-NSSRSFHSS---LCSFKFKKGSTVAAAAA---EEEGYGNECAVCLSAFED 120

Query: 121 GEEVKKLPRCTHMFHAPCIDMWLHSHSDCPLCRAPVAAPGLCQRHATAGQQENSGHGLLE 180
           G+EVKKLPRCTHMFHA CIDMWL SHSDCPLCRAPV A GL Q  A A Q+ENSGHGLLE
Sbjct: 121 GDEVKKLPRCTHMFHASCIDMWLFSHSDCPLCRAPVVAQGLSQHQAMAEQEENSGHGLLE 178

Query: 181 SGSLV 186
           SG LV
Sbjct: 181 SGDLV 178

[Close]

BLAST of Sed0008889 vs. NCBI nr
Match: KAG6590024.1 (RING-H2 finger protein ATL1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023686.1 RING-H2 finger protein ATL1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 277.7 bits (709), Expect = 7.2e-71
Identity = 145/186 (77.96%), Postives = 155/186 (83.33%), Query Frame = 0


Query: 1   MGDSVSTSFTQPTSHPAKSSLPMLYYGLVVIGTAAIVLIIYNFIIIKWCSDSRHGRASPP 60
           M DS S  F QPTSHPAKSSLPMLYYGLVVIGTAAIVL++YNFI+I WCSD+R GRASP 
Sbjct: 1   MSDSASNYFAQPTSHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSDNRRGRASPA 60

Query: 61  LAGSYAEMMVSSSRSLRNSGGNLF-SFKFKKGSAAAAAAAMVEDEEGNVNECVVCLSAFE 120
           LAGSYAE MV+SSRSL++S  NL  SFKFKKGSAAAA AA   +EEGN NECVVCLSAFE
Sbjct: 61  LAGSYAE-MVNSSRSLQSSNRNLLCSFKFKKGSAAAATAA--AEEEGNGNECVVCLSAFE 120

Query: 121 DGEEVKKLPRCTHMFHAPCIDMWLHSHSDCPLCRAPVAAPGLCQRHATAGQQENSGHGLL 180
           +GEEVKKLPRC HMFHA CIDMWL SH DCPLCRAPVA PGL +R   A QQ NSGHGL 
Sbjct: 121 EGEEVKKLPRCMHMFHACCIDMWLFSHCDCPLCRAPVAVPGLSKRQTAAEQQGNSGHGLP 180

Query: 181 ESGSLV 186
           ESG LV
Sbjct: 181 ESGGLV 183

[Close]

BLAST of Sed0008889 vs. NCBI nr
Match: XP_022960602.1 (E3 ubiquitin-protein ligase EL5-like [Cucurbita moschata])

HSP 1 Score: 277.7 bits (709), Expect = 7.2e-71
Identity = 145/186 (77.96%), Postives = 155/186 (83.33%), Query Frame = 0


Query: 1   MGDSVSTSFTQPTSHPAKSSLPMLYYGLVVIGTAAIVLIIYNFIIIKWCSDSRHGRASPP 60
           M DS S  F QPTSHPAKSSLPMLYYGLVVIGTAAIVL++YNFI+I WCSD+R GRASP 
Sbjct: 1   MSDSASNYFAQPTSHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSDNRRGRASPA 60

Query: 61  LAGSYAEMMVSSSRSLRNSGGNLF-SFKFKKGSAAAAAAAMVEDEEGNVNECVVCLSAFE 120
           LAGSYAE MV+SSRSL++S  NL  SFKFKKGSAAAAAA    +EEGN NECVVCLSAFE
Sbjct: 61  LAGSYAE-MVNSSRSLQSSNRNLLCSFKFKKGSAAAAAA----EEEGNGNECVVCLSAFE 120

Query: 121 DGEEVKKLPRCTHMFHAPCIDMWLHSHSDCPLCRAPVAAPGLCQRHATAGQQENSGHGLL 180
           +GEEVKKLPRC HMFHA CIDMWL SH DCPLCRAPVA PGL +R   A QQ NSGHGL 
Sbjct: 121 EGEEVKKLPRCMHMFHACCIDMWLFSHCDCPLCRAPVAVPGLSKRQTAAEQQGNSGHGLP 180

Query: 181 ESGSLV 186
           ESG LV
Sbjct: 181 ESGGLV 181

[Close]

BLAST of Sed0008889 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.1e-17
Identity = 63/185 (34.05%), Postives = 90/185 (48.65%), Query Frame = 0


Query: 9   FTQPTSHPAKSSLPMLYYGLVVIGTAAIVLIIYNFIIIKWCSDSRHGRASPPLAGSY-AE 68
           F    S  + SS   L   L+ I T+A++L+ Y  +I K+C       +S  L  ++  E
Sbjct: 42  FLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGE 101

Query: 69  MMVSSSRSLRNSGGNLFS--------FKFKKGSAAAAAAAMVEDEEGNVNECVVCLSAFE 128
              SS++ +  +G  L          +K+K G           D   + ++C VCLS FE
Sbjct: 102 GFFSSTQRISTNGDGLNESMIKSITVYKYKSG-----------DGFVDGSDCSVCLSEFE 161

Query: 129 DGEEVKKLPRCTHMFHAPCIDMWLHSHSDCPLCRAPVAAPGLCQRHATAGQ--------Q 177
           + E ++ LP+C H FH PCID WL SHS+CPLCRA V   G+    A+ GQ        Q
Sbjct: 162 ENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVT--GVNNPTASVGQNVSVVVANQ 213

[Close]

BLAST of Sed0008889 vs. ExPASy Swiss-Prot
Match: Q9LRB7 (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.8e-17
Identity = 65/175 (37.14%), Postives = 85/175 (48.57%), Query Frame = 0


Query: 1   MGDSVSTSFTQPTSHPAKSSLPMLYYGLVVIGTAAIVLIIY-----NFIIIK-WCSDSRH 60
           M +S S+S   P S PA     M   G   I T A VLI++      F++++ +C + R 
Sbjct: 12  MDESSSSSSPSPVSAPA-GQAAMTAGG---IATVAAVLIVFAALTLAFVLLQCYCDERRR 71

Query: 61  GRASPPLAGSYAE---MMVSSSRSLRNSGGNL-------FSFKFKKGSAAAAAAAMVEDE 120
              +   +G          S S     +GG +               S AAAAA   E+E
Sbjct: 72  AVTTTSTSGRGRRPRPRRRSGSGGDGGTGGGVDPEVLRSLPVTVYSRSTAAAAAKEEEEE 131

Query: 121 EGNVNECVVCLSAFEDGEEVKKLPRCTHMFHAPCIDMWLHSHSDCPLCRAPVAAP 160
           + +  EC VCL+  EDGEE + LPRC H FHA C+DMWL SHS CPLCR  V  P
Sbjct: 132 DDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVVP 182

[Close]

BLAST of Sed0008889 vs. ExPASy Swiss-Prot
Match: P93823 (RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.8e-15
Identity = 61/188 (32.45%), Postives = 89/188 (47.34%), Query Frame = 0


Query: 6   STSFTQPTSHPAKSS---LPMLYYGLVVIGTAAIVLIIYNFIIIKWCSD----------S 65
           ST+FT P      SS    P+L   ++ I   A +L+ Y   +IK C +           
Sbjct: 23  STTFTSPIFPRTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQIDIFRRRR 82

Query: 66  RHGRASPPLAGSYAEMMVSSSRSLRNSGGNLFS-FKFKKGSAAAAAAAMVEDEEGNVNEC 125
           R    +P +  S  E+    +R L  S       FKFKK    A      ED+  N  EC
Sbjct: 83  RSSDQNPLMIYSPHEV----NRGLDESAIRAIPVFKFKKRDVVAGE----EDQSKNSQEC 142

Query: 126 VVCLSAFEDGEEVKKLPRCTHMFHAPCIDMWLHSHSDCPLCRAPVAAPG---LCQRHATA 177
            VCL+ F++ E+++ +P C H+FH  CID+WL  +++CPLCR  V+      L    A +
Sbjct: 143 SVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFTLDLISAPS 202

[Close]

BLAST of Sed0008889 vs. ExPASy Swiss-Prot
Match: O22755 (Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=ATL44 PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.5e-14
Identity = 37/85 (43.53%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 94  AAAAAAMVEDEEGNVNECVVCLSAFEDGEEVKKLPRCTHMFHAPCIDMWLHSHSDCPLCR 153
           AA + +    EEG+  EC +CL+ F DGEE++ LP C H FH  CID WL S S CP CR
Sbjct: 85  AAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCR 144

Query: 154 APVAAPGLCQR--HATAGQQENSGH 177
             +  P  C R  HA+  + ++  H
Sbjct: 145 R-ILTPVRCDRCGHASTAEMKDQAH 168

[Close]

BLAST of Sed0008889 vs. ExPASy Swiss-Prot
Match: Q9SRQ8 (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 1.9e-13
Identity = 46/151 (30.46%), Postives = 72/151 (47.68%), Query Frame = 0


Query: 17  AKSSLPMLYYGLVVIGTAAIVLIIYNFIIIKWCSDSRHGRASPPLAG---SYAEMMVSSS 76
           + S    L   L+ I  +A +L+ Y  +I K+C   RH  +S   A      ++     +
Sbjct: 52  SSSDFSPLLIALIGILASAFILVSYYTLISKYCHRRRHNSSSTSAAAINRISSDYTWQGT 111

Query: 77  RSLRNSGGNLFSFKFKKGSAAAAAAAMVE----------DEEGNVNECVVCLSAFEDGEE 136
            +  N+G    +     G       ++++          D     ++C VCLS F++ E 
Sbjct: 112 NNNNNNGATNPNQTIGGGGGDGLDESLIKSITVYKYRKMDGFVESSDCSVCLSEFQENES 171

Query: 137 VKKLPRCTHMFHAPCIDMWLHSHSDCPLCRA 155
           ++ LP+C H FH PCID WL SHS+CPLCRA
Sbjct: 172 LRLLPKCNHAFHVPCIDTWLKSHSNCPLCRA 202

[Close]

BLAST of Sed0008889 vs. ExPASy TrEMBL
Match: A0A6J1HZG2 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111467629 PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 2.0e-71
Identity = 145/189 (76.72%), Postives = 155/189 (82.01%), Query Frame = 0


Query: 1   MGDSVSTSFTQPTSHPAKSSLPMLYYGLVVIGTAAIVLIIYNFIIIKWCSDSRHGRASPP 60
           MGDS ST   QPTSHPAKSSLPMLYYGLVVIGTA IVL++YN IIIKWCSD+ HG+ASP 
Sbjct: 1   MGDSASTFIAQPTSHPAKSSLPMLYYGLVVIGTATIVLVLYNLIIIKWCSDNSHGQASPA 60

Query: 61  LAGSYAEMMVSSSRSLRNSGGNLF-SFKFKKGSAAAAAAAMVEDEEGNVNECVVCLSAFE 120
           LAGSYAE MV+SSRS ++S  NL  SFKFKKGS A A A +  +EEG  NEC VCLSAFE
Sbjct: 61  LAGSYAE-MVNSSRSFQSSNRNLLSSFKFKKGSTAKATATI--EEEGIGNECAVCLSAFE 120

Query: 121 DGEEVKKLPRCTHMFHAPCIDMWLHSHSDCPLCRAPVAAPGLCQRHA---TAGQQENSGH 180
           DGEEVKKLPRCTHMFHAPCIDMWL+SHSDCPLCRAP  AP LCQRH     A QQ NSGH
Sbjct: 121 DGEEVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRAPAMAPALCQRHTAEDAAEQQVNSGH 180

Query: 181 GLLESGSLV 186
           GLLES SLV
Sbjct: 181 GLLESSSLV 186

[Close]

BLAST of Sed0008889 vs. ExPASy TrEMBL
Match: A0A6J1H7W2 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111461337 PE=3 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 3.5e-71
Identity = 145/186 (77.96%), Postives = 155/186 (83.33%), Query Frame = 0


Query: 1   MGDSVSTSFTQPTSHPAKSSLPMLYYGLVVIGTAAIVLIIYNFIIIKWCSDSRHGRASPP 60
           M DS S  F QPTSHPAKSSLPMLYYGLVVIGTAAIVL++YNFI+I WCSD+R GRASP 
Sbjct: 1   MSDSASNYFAQPTSHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSDNRRGRASPA 60

Query: 61  LAGSYAEMMVSSSRSLRNSGGNLF-SFKFKKGSAAAAAAAMVEDEEGNVNECVVCLSAFE 120
           LAGSYAE MV+SSRSL++S  NL  SFKFKKGSAAAAAA    +EEGN NECVVCLSAFE
Sbjct: 61  LAGSYAE-MVNSSRSLQSSNRNLLCSFKFKKGSAAAAAA----EEEGNGNECVVCLSAFE 120

Query: 121 DGEEVKKLPRCTHMFHAPCIDMWLHSHSDCPLCRAPVAAPGLCQRHATAGQQENSGHGLL 180
           +GEEVKKLPRC HMFHA CIDMWL SH DCPLCRAPVA PGL +R   A QQ NSGHGL 
Sbjct: 121 EGEEVKKLPRCMHMFHACCIDMWLFSHCDCPLCRAPVAVPGLSKRQTAAEQQGNSGHGLP 180

Query: 181 ESGSLV 186
           ESG LV
Sbjct: 181 ESGGLV 181

[Close]

BLAST of Sed0008889 vs. ExPASy TrEMBL
Match: A0A6J1JJ05 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111485020 PE=3 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 3.9e-70
Identity = 142/186 (76.34%), Postives = 154/186 (82.80%), Query Frame = 0


Query: 1   MGDSVSTSFTQPTSHPAKSSLPMLYYGLVVIGTAAIVLIIYNFIIIKWCSDSRHGRASPP 60
           M DS S  F+QPT+HPAKSSLPMLYYGLVVIGTAAIVL++YNFI+I WCSD+R GRASP 
Sbjct: 1   MSDSASNHFSQPTNHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSDNRRGRASPA 60

Query: 61  LAGSYAEMMVSSSRSLRNSGGNLF-SFKFKKGSAAAAAAAMVEDEEGNVNECVVCLSAFE 120
           LAGSYAE MV+SSRSL++S  NL  SFKFKKGSAAAA      +EEGN NECVVCLSAFE
Sbjct: 61  LAGSYAE-MVNSSRSLQSSNRNLLCSFKFKKGSAAAAV-----EEEGNGNECVVCLSAFE 120

Query: 121 DGEEVKKLPRCTHMFHAPCIDMWLHSHSDCPLCRAPVAAPGLCQRHATAGQQENSGHGLL 180
           +GEEVKKLPRC HMFHA CIDMWL SH DCPLCRAPVA PGL +R   A QQ NSGHGL 
Sbjct: 121 EGEEVKKLPRCLHMFHARCIDMWLFSHCDCPLCRAPVAVPGLSKRQTAAEQQGNSGHGLP 180

Query: 181 ESGSLV 186
           ESG LV
Sbjct: 181 ESGGLV 180

[Close]

BLAST of Sed0008889 vs. ExPASy TrEMBL
Match: A0A6J1D0Z7 (RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC111016600 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 5.6e-69
Identity = 142/184 (77.17%), Postives = 154/184 (83.70%), Query Frame = 0


Query: 4   SVSTSFTQPTSHPAKSSLPMLYYGLVVIGTAAIVLIIYNFIIIKWCSDSRHGRASPPLAG 63
           S ST FTQPT HPAKSSLPMLYYGLVV+GTAAIVL++YNFI+I+WCSD R GR SP +A 
Sbjct: 6   SSSTPFTQPTPHPAKSSLPMLYYGLVVVGTAAIVLVVYNFIVIRWCSD-RRGRGSPGMAR 65

Query: 64  SYAEMMVSSSRSLRNSGGNLF-SFKFKKGSAAAAAAAMVEDEEGNVNECVVCLSAFEDGE 123
           SYAEMM SSS S ++S  NL  SF+FKKG+ AAAA A   +EEGN  EC VCLSAFEDGE
Sbjct: 66  SYAEMM-SSSGSFQSSSRNLLSSFRFKKGTKAAAATA---EEEGNGLECAVCLSAFEDGE 125

Query: 124 EVKKLPRCTHMFHAPCIDMWLHSHSDCPLCRAPVA-APGLCQRHATAGQQENSGHGLLES 183
           EVKKLPRCTHMFHAPCIDMWL+SHSDCPLCRAPVA APGLCQ H  A Q ENSGHGLLES
Sbjct: 126 EVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRAPVALAPGLCQHHTAAEQPENSGHGLLES 184

Query: 184 GSLV 186
           G LV
Sbjct: 186 GGLV 184

[Close]

BLAST of Sed0008889 vs. ExPASy TrEMBL
Match: A0A6J1EGS5 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111434176 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 5.8e-66
Identity = 131/166 (78.92%), Postives = 139/166 (83.73%), Query Frame = 0


Query: 1   MGDSVSTSFTQPTSHPAKSSLPMLYYGLVVIGTAAIVLIIYNFIIIKWCSDSRHGRASPP 60
           MGDS ST   QPTSHPAKSSLPMLYYGLVVIGTA IVL++YN IIIKWCSD  HG+AS  
Sbjct: 1   MGDSASTFIAQPTSHPAKSSLPMLYYGLVVIGTATIVLVLYNLIIIKWCSDDSHGQASTA 60

Query: 61  LAGSYAEMMVSSSRSLRNSGGNLF-SFKFKKGSAAAAAAAMVEDEEGNVNECVVCLSAFE 120
           LAGSYAE MV+SSRS ++S  NL  SFKFKKGS A AAA    +EEG  NEC VCLSAFE
Sbjct: 61  LAGSYAE-MVNSSRSFQSSNRNLLSSFKFKKGSMATAAATATIEEEGIGNECAVCLSAFE 120

Query: 121 DGEEVKKLPRCTHMFHAPCIDMWLHSHSDCPLCRAPVAAPGLCQRH 166
           DGEEVKKLPRCTHMFHAPCIDMWL+SHSDCPLCRAPV AP LCQRH
Sbjct: 121 DGEEVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRAPVMAPALCQRH 165

[Close]

BLAST of Sed0008889 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-18
Identity = 63/185 (34.05%), Postives = 90/185 (48.65%), Query Frame = 0


Query: 9   FTQPTSHPAKSSLPMLYYGLVVIGTAAIVLIIYNFIIIKWCSDSRHGRASPPLAGSY-AE 68
           F    S  + SS   L   L+ I T+A++L+ Y  +I K+C       +S  L  ++  E
Sbjct: 42  FLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGE 101

Query: 69  MMVSSSRSLRNSGGNLFS--------FKFKKGSAAAAAAAMVEDEEGNVNECVVCLSAFE 128
              SS++ +  +G  L          +K+K G           D   + ++C VCLS FE
Sbjct: 102 GFFSSTQRISTNGDGLNESMIKSITVYKYKSG-----------DGFVDGSDCSVCLSEFE 161

Query: 129 DGEEVKKLPRCTHMFHAPCIDMWLHSHSDCPLCRAPVAAPGLCQRHATAGQ--------Q 177
           + E ++ LP+C H FH PCID WL SHS+CPLCRA V   G+    A+ GQ        Q
Sbjct: 162 ENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVT--GVNNPTASVGQNVSVVVANQ 213

[Close]

BLAST of Sed0008889 vs. TAIR 10
Match: AT1G04360.1 (RING/U-box superfamily protein )

HSP 1 Score: 82.4 bits (202), Expect = 4.1e-16
Identity = 61/188 (32.45%), Postives = 89/188 (47.34%), Query Frame = 0


Query: 6   STSFTQPTSHPAKSS---LPMLYYGLVVIGTAAIVLIIYNFIIIKWCSD----------S 65
           ST+FT P      SS    P+L   ++ I   A +L+ Y   +IK C +           
Sbjct: 23  STTFTSPIFPRTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQIDIFRRRR 82

Query: 66  RHGRASPPLAGSYAEMMVSSSRSLRNSGGNLFS-FKFKKGSAAAAAAAMVEDEEGNVNEC 125
           R    +P +  S  E+    +R L  S       FKFKK    A      ED+  N  EC
Sbjct: 83  RSSDQNPLMIYSPHEV----NRGLDESAIRAIPVFKFKKRDVVAGE----EDQSKNSQEC 142

Query: 126 VVCLSAFEDGEEVKKLPRCTHMFHAPCIDMWLHSHSDCPLCRAPVAAPG---LCQRHATA 177
            VCL+ F++ E+++ +P C H+FH  CID+WL  +++CPLCR  V+      L    A +
Sbjct: 143 SVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFTLDLISAPS 202

[Close]

BLAST of Sed0008889 vs. TAIR 10
Match: AT2G17450.1 (RING-H2 finger A3A )

HSP 1 Score: 79.0 bits (193), Expect = 4.6e-15
Identity = 37/85 (43.53%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 94  AAAAAAMVEDEEGNVNECVVCLSAFEDGEEVKKLPRCTHMFHAPCIDMWLHSHSDCPLCR 153
           AA + +    EEG+  EC +CL+ F DGEE++ LP C H FH  CID WL S S CP CR
Sbjct: 85  AAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCR 144

Query: 154 APVAAPGLCQR--HATAGQQENSGH 177
             +  P  C R  HA+  + ++  H
Sbjct: 145 R-ILTPVRCDRCGHASTAEMKDQAH 168

[Close]

BLAST of Sed0008889 vs. TAIR 10
Match: AT3G03550.1 (RING/U-box superfamily protein )

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-14
Identity = 46/151 (30.46%), Postives = 72/151 (47.68%), Query Frame = 0


Query: 17  AKSSLPMLYYGLVVIGTAAIVLIIYNFIIIKWCSDSRHGRASPPLAG---SYAEMMVSSS 76
           + S    L   L+ I  +A +L+ Y  +I K+C   RH  +S   A      ++     +
Sbjct: 52  SSSDFSPLLIALIGILASAFILVSYYTLISKYCHRRRHNSSSTSAAAINRISSDYTWQGT 111

Query: 77  RSLRNSGGNLFSFKFKKGSAAAAAAAMVE----------DEEGNVNECVVCLSAFEDGEE 136
            +  N+G    +     G       ++++          D     ++C VCLS F++ E 
Sbjct: 112 NNNNNNGATNPNQTIGGGGGDGLDESLIKSITVYKYRKMDGFVESSDCSVCLSEFQENES 171

Query: 137 VKKLPRCTHMFHAPCIDMWLHSHSDCPLCRA 155
           ++ LP+C H FH PCID WL SHS+CPLCRA
Sbjct: 172 LRLLPKCNHAFHVPCIDTWLKSHSNCPLCRA 202

[Close]

BLAST of Sed0008889 vs. TAIR 10
Match: AT5G58580.1 (TOXICOS EN LEVADURA 63 )

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-14
Identity = 33/57 (57.89%), Postives = 39/57 (68.42%), Query Frame = 0


Query: 102 EDEEGNVNECVVCLSAFEDGEEVKKLPRCTHMFHAPCIDMWLHSHSDCPLCRAPVAA 159
           E+EE    ECV+CL  +E G+  +KL  C H FH  CIDMWL SHS CPLCR+PV A
Sbjct: 129 EEEEDEEEECVICLGLWEAGDFGRKLRNCGHGFHVECIDMWLSSHSTCPLCRSPVLA 185

The following BLAST results are available for this feature:

BLAST of Sed0008889 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023516728.1	6.5e-72	78.49	E3 ubiquitin-protein ligase EL5-like [Cucurbita pepo subsp. pepo]	[more]
XP_022968369.1	4.2e-71	76.72	RING-H2 finger protein ATL52-like [Cucurbita maxima]	[more]
XP_038879803.1	5.5e-71	77.84	RING-H2 finger protein ATL39-like [Benincasa hispida]	[more]
KAG6590024.1	7.2e-71	77.96	RING-H2 finger protein ATL1, partial [Cucurbita argyrosperma subsp. sororia] >KA...	[more]
XP_022960602.1	7.2e-71	77.96	E3 ubiquitin-protein ligase EL5-like [Cucurbita moschata]	[more]

BLAST of Sed0008889 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LF64	2.1e-17	34.05	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
Q9LRB7	4.8e-17	37.14	E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5....	[more]
P93823	5.8e-15	32.45	RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1	[more]
O22755	6.5e-14	43.53	Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=AT...	[more]
Q9SRQ8	1.9e-13	30.46	RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2	[more]

BLAST of Sed0008889 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HZG2	2.0e-71	76.72	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111467629 P...	[more]
A0A6J1H7W2	3.5e-71	77.96	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111461337...	[more]
A0A6J1JJ05	3.9e-70	76.34	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111485020 P...	[more]
A0A6J1D0Z7	5.6e-69	77.17	RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC11101660...	[more]
A0A6J1EGS5	5.8e-66	78.92	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111434176...	[more]

BLAST of Sed0008889 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G17600.1	1.5e-18	34.05	RING/U-box superfamily protein	[more]
AT1G04360.1	4.1e-16	32.45	RING/U-box superfamily protein	[more]
AT2G17450.1	4.6e-15	43.53	RING-H2 finger A3A	[more]
AT3G03550.1	1.3e-14	30.46	RING/U-box superfamily protein	[more]
AT5G58580.1	1.3e-14	57.89	TOXICOS EN LEVADURA 63	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 111..152 e-value: 3.9E-5 score: 33.1
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 109..153 e-value: 5.9E-13 score: 49.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 111..153 score: 12.046688
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 88..159 e-value: 4.4E-21 score: 75.9
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 8..180
None	No IPR available	PANTHER	PTHR45676:SF84	RING-H2 FINGER PROTEIN ATL52-LIKE	coord: 8..180
None	No IPR available	CDD	cd16474	RING-H2_RNF111_like	coord: 110..153 e-value: 3.5699E-19 score: 74.6553
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 102..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0008889.1	Sed0008889.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane